Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <------ZmHOX2a(1)       <---------TOE1(2)     ----------->HVH21       <---------TOE2(2)    <---------MYB59      <---------HSFB2a(2)  ----------->RAV1(2)      ------>ZmHOX2a(1)    <---------O2     --------->TOE1(2)     --------->At4g35610     --------->TOE2(2)     <---------bZIP60(2)                                                     -- -------YAB1            ----------->HVH21                                                      <----- -------GT1    ---------->DOF2                       ---------->DOF2                          ------- -YAB1--------->HSFB2a(2)  <---------At4g35610 ------->TEIL    <----------DOF2      ------>ZmHOX2a(1)   accatttcctaggaatgtaaagctcagtgacctgaccctcttcgttttgcatcttgaaagcttagctttgaaagagtaaacgagtcctatatatccaaac  9808100                                                 ----------->RAV1(1)                                                --------->MYB46(3)                                               ------>MYB83        ---------->DOF2                        ------>MYB46(1)    ---------->DOF2                           ----------->RAV1(1) ------->AtLEC2                         --------->ANAC58 ----ATHB12     --------->MYB52(1)      --------->ANAC58    <-------TEIL                  ----------- -->ANAC46----------->GT1<---------ARR11(3) --------->MYB46(3)       <------ZmHOX2a(2)  ---------->DOF2   aatgcaaaaagaaagaaaaaacagaactatcttatattagacaagaaccaacaacagtgacatacactgagatcgaaaatgactgtaagtgaaagtaaca  9808200                                                                                         <---------ZAT6                                                                                         ----------->GT1                                                       ------>ZmHOX2a(2)             ------>ZmHOX2a(2)                                                      <------ZmHOX2a(2)             --------->CCA1(2)                                                     --------->ARR11(3)             <------ZmHOX2a(2)                                                     <---------AGP1                --------->ARR14(3)                                                     <---------ARR11(3)            <-----------ARR10                                 <---------ARR14(2)  --------->AGP1                <---------ARR14(3)                          --------->ICU4             --------->ARR14(2)            <---------AGP1                          --------->KAN4(1)     --------->MYB52(1)  --------->YAB1 <---------ARR14(2)                          <---------KAN4(1)   <---------MYB52(2)    <--------ATHB1 --------->AGP1                   ---------->DOF2       ----------->GT1           <---------ATHB51--------->ARR11(3)                ----------->RAV1(1)   <---------MYB52(1) --------->MYB52(1)        --------->ARR14(2)               <----------ID1    --------->ARR14(2)  <---------ARR14(2)    ------->TEIL <---------TOE1(3) >GT1 <------ZmHOX2a(1)  <---------KAN4(2)    --------->MYB46(3) --------->YAB1    <---------ARR11(3)   tcagagaaggattcaagacaacaaaggaataatcgaattcgttgagtaacaaacagatctaacagaacaataatacgaatttgaagatctagggttacaa  9808300                            <---------YAB1                          --------->YAB1              <----------DOF2    <---------AHL20(1)                          <---------ICU4        --------->MYB52(1)       <---------ARR11(3)                         <---------ATHB12     --------->MYB46(3)        <---------CCA1(2)                       --------->WOX13(1)--------->ANAC46            <-------TEIL        <-------TEIL<-----------GT1     --------->TOE2(3)       ---------->DOF2 <---------YAB1   aaactacagattcaatactatttatccatcatggttcttctaccctaaaccatcggctatattggcaaaagtccatatatttctgataaatcgagacgaa  9808400                                                                          --------->LBD16                                                                         ------->GAMYB                                                                        <---------LBD16                                                                       --------->MYB52(1)                            ----------->RAV1(2)                        -------->P                           ------>MYB46(1)                          <------NtERF2                           ------>MYB83                          <-------TEIL                           --------->MYB52(1)                   --------->ALFIN1                       <---------YAB1                          ------->PIF5                 <---------YAB1                                <-------PIF5              --------->TOE1(2)  --------->REM1(2)            --------->At4g35610            --------------->AtSPL3                            --------->ZAT2  ---------->DOF2            <---------------AtSPL3                           <---------------AtSPL3            <---------------AtSPL8                          <-----------RAV1(2)              --------           ---------->DOF2 -------->P              XXXXXXXXXXXXXXXXXXXX>MIR164C    --------->CCA1(2)       <---------ANAC55(2)------>ZmHOX2a(1)      <------ZmHOX2a(1)<---------RAP2.6(2)--------->ICU4   gagaagattaagtaaaagtacgattatcctacctgagtagagagcgagagaggagaagcgaagcaggtgcggcaaccggagaaagagatgatgaagaaag  9808500                         <---------TOE2(3)                  --------->GLK1(1)             <---------LBD16                                              ------->MYC2          *TSS    <---------GLK1(1)   <------MYB46(1)                     <-------MYC2             <-        <---------YAB1   <---------TOE1(3)              <-----------GT1   ------->MYC3            --- -->DOF2<---------------AGL15         <------MYB83 <---------ICU4         <-------MYC3            <--   cgagagttttatatttggggaaaccctaaggttttttagtgggtttggattaaaaattataccatttgaaggcccatgtgctatcttcaggcccatcgaa  9808600                                                                                                 ----                          <---------ICU4                                                         <---           --------------->AtSPL8                                                <-----------GT1<----   ------------>CBF    <---------ICU4               <---------ANAC46        ------>ZmHOX2a(1)   -----  --------->ANAC46     --------->YAB1            <----------DOF2      <------MYB46(1)         -------  --------->ANAC58    <---------YAB1          <---------AHL20(2)      <---------DEAR3(2)      <------  --------->ANAC58  --------->YAB1            <-----------GT1         <------MYB83           -------- -----ZmHOX2a(2)    <---------ICU4         --------->MYB52(2)         <---------MYB46(3)    --------- ------>ARR11(3) --------->TOE2(3)     ----------->GT1     ---------->DOF2 <---------MYB59 --------->YAB1 -------ARR11(3) --------->YAB1 --------->HSFB2a(2)<---------LBD16<-----------RAV1(1)    --------->AHL20(2)   gatcacacaatgtccagtaccataatcataatgtctcgaatgggttatttactttcggagagaaagttttgttggttcctaatttacaaaaaaaaataat  9808700      --------->YAB1      --------->AHL20(2)     <---------ATHB12   --------->WOX13(1) ----->ATHB12            <---------AHL20(2) ------ICU4             --------->AHL20(2) -----YAB1              <---------AHL20(2)                           --------->ATHB12         ------- ---->ICU4          --------->AHL20(2)                              <---------YAB1            <------ -->YAB1          ----------->GT1                               --------->ARR11(3)      ----------->GT1 ---ICU4         --------->DAG2                              --------->YAB1         --------->ARR11(3) ->ICU4         ---------->DOF2            <---------ZAT6   <---------YAB1         --------->YAB1 >AHL20(1)--------->GLK1(2)         <-------TEIL          --------->YAB1        --------->YAB1<------   gatttcaatcaaattctataaagtaaataaatgaaacatacactattgttagagagttttttataatatgttgattagttttttataatcttgtaaaaaa  9808800                                                                                                  <--                                                                                                  ---                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                        --------->YAB1                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                 --------->MYB46(3)                                                                           --------->YAB1     <------                           <----------DOF2                                 <---------ICU4    -------- -->AHL20(2)      --------->MYB59    <---------DAG2                 ----------->GT1   --------->AHL20(2) ---AHL20(2) <---------AHL20(2)      <----------DOF2         >>>>>>>>>>GT-3b    ------->TEIL <------- ---AHL20(1)<---------AHL20(2)<---------YAB1              ----------->GT1--------->ARR11(3)--------->YAB1   tttcaaacagtttttttattttggtaatacttttcattactttatatgacttattttgtgaagaaaaatatagaaaatcatgaaccaataacataataat  9808900   --------->YAB1   <---------ICU4  <---------ATHB12 -------AHL20(2) ------>AHL20(2) -->ATHB51 ---AHL20(2)                    --------->AHL20(2) ---ICU4                       <---------WOX13(1) -->AHL20(2)                <---------YAB1                                                     <----- xxxxxsmallRNA(si3)         <---------AHL20(2)                                               <xxxxxxx xxxxsmallRNA(le3)   <---------AHL20(2)                                                     <-------- xxxxxsmallRNA(i2) <---------CCA1(1)                                              --------->ANAC46 xxxx>smallRNA(si3)<---------RVE1(1)                                 <---------YAB1       <---------MYB52(1) --ATHB1          --------->ARR11(3)                              --------->GLK1(2)--------->MYB52(1) ->ICU4           <---------ARR11(3)                     <----------DOF2------->TEIL      --------->DOF5.7(2) --YAB1           <---------GLK1(2)            <----------DOF2--------->YAB1    --------->ANAC46 <---   ttaaatcatgaacaattagagattttttttttaattgaataactcaaaacttttactgactttataagaatatgaatctaatacacaacgtcgttaactg  9809000  Previous    Next  AGI:  At5g27700.1    Description:  40S ribosomal protein S21 (RPS21C). Identical to 40S ribosomal protein S21-2 (RPS21C) [Arabidopsis Thaliana] (GB:Q3E902); similar to 40S ribosomal protein S21 (RPS21B) [Arabidopsis thaliana] (TAIR:AT3G53890.2); similar to 40S ribosomal protein S21 (RPS21B) [Arabidopsis thaliana] (TAIR:AT3G53890.1); similar to Ribosomal protein S21e [Medicago truncatula] (GB:ABD28456.2); contains InterPro domain Ribosomal protein S21e; (InterPro:IPR001931) Range:  from: 9807305    to: 9808510    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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