Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     ------>MYB83                                            -------->P                                           <-----------GT1                                    --------->ANAC55(2)                               --------->YAB1      ------>MYB46(1)   <---------GLK1(1)           <---------ICU4    --------->AtMYB61   ---------->DOF2   --------->GLK1(1)      ------->GAMYB  <---------ANAC58   <---------At5g28300 ---------YAB1         --------->MYB52(1)<---------ANAC58  <-----------GT1       <----------DOF2 --->AGP1           --------->ANAC46<---------ANAC55(2) <----------DOF2          <---------DAG2     -   ctatgatttcccttcaaaatatactcaacagcatcatcacatgacttaccacctacagcttttacagcctccaaagcatccaacttttcaaaacccattt  9798600                                                                                     ------>ZmHOX2a(1)                                                                                    --------->TOE1(2)                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                 ------->TEIL                                                                                 --------->ARR14(2)                                                                                 <---------ARR14(2)                                                                        <---------------AGL15                                                                        ==================HOX2a_HOX2a                                                         ------>NtERF2  =================HOX2a_HOX2a                                                      --------->ANAC46  --------------->AGL15                                                    <-----------RAV1(2) ------>ZmHOX2a(1)                                                 --------->ZAT14        <----------DOF2--------->REM1(1)                                                 <---------ZAT14       ==============================    --------->YAB1                      --------->ARR14(2)             <-----------------AGL3 -------->MYB46(3)     --------->At4g35610 <-----------GT1             ----------------->AGL3   caacaatcttcatcacgagttgatcagaagacaaatccatcgaattcacactgttcaggcgactaaaaacagtcctttatatggatcctacaacaagttg  9798700                                         --------->YAB1                                       --------->ARR11(3)                                    <---------WOX13(1)                                  --------->ATHB12                                 <---------AHL20(2)                                 --------->AHL20(2)                       --------->HSFC1(1)===============================HOX2a_HOX2a           --------->ICU4    ----------------->AGL3         --------->YAB1<---------HSFC1(1)------>ZmHOX2a(2)        <---------ATHB12--------->LBD16<---------ARR11(3)  ----------->GT1      <---------HSFB2a(2)                        <---------ARR14(2)          ------- <---------HSFB2a(2)   --------->HSFB2a(2)                       <------ZmHOX2a(1)   <---------MYB59 ==============================================MADS_MADS  ---------->DOF2  --------->ICU4  --------->MYB52(1)   attctagtaaatcataatgcaagttccagaaaccattaattgatcttaatgaaacccaaacaaaggaggaaactgtaatgactcgtacataactactggt  9798800                                                                --------->AtMYB61                                                                <---------ALFIN1                                                             <---------ALFIN1                         <---------STY1(1)                --------->ANAC46                       --------->TOE2(3)                --------->ANAC58              --------->GLK1(1)                         --------->ANAC58             --------->ARR14(2)                         --------->HSFB2a(1)             <---------ARR14(2)                      <---------SPL7                      --------->ARR11(3)           --------->LBD16                       <----------ID1--------->MYB46(3)        <---------ARR11(3)          --------->HSFB2a(2)        <---------AHL20(2) <---------HSFB2a(1)--------->ANAC58          <---------HSFB2a(2)       <---------AHL20(2) ------->TEIL        --------->ANAC46 <-------- ---->GT1 <---------HSFC1(1)     <---------AHL20(2) <---------MYB52(2)     --------->ANAC58<---------DAG2   taatcccaaattccagaactccaaaccctagtgatttttttatttgaattagcgacgaacgctccaccaccaatttctcgccaaaaacacagaccttttg  9798900                               --------->LBD16                              <---------HSFB2a(2)                                   <---------TOE1(2)                  --------->ANAC58                                            <---------GLK1(2)                  --------->ANAC58                                        <------ZmHOX2a(2)                <<<<<<<ZML2   --------->HSFB2a(2)               *TSS--------->MYB52(1)<------ZmHOX2a(1)    --------->ICU4<----------ID1                          --------->YAB1  ===================HOX2a_HOX2a --DOF2     --------->TOE1(2)<---------LBD16     --------->ALFIN1--------->YAB1    <---------LBD16   aagttaatgagtaacctagaacgacaatttttctgggaaaatcgcaagagagtgggggaatcacaaataagaacggatcaaattctcaggaacgatttaa  9799000          <------NtERF2                                    --------->AHL20(2)         ----------->RAV1(1)                               --------->ATHB51         ------>NtERF2                                  --------->TOE1(3)        --------->DEAR3(1)                              --------->TOE2(3)       --------->RAP2.3(1)                              --------->YAB1      <---------RRTF1(1)                             ------>MYB83      <---------ATERF1(1)           --------->TOE2(3)------>MYB46(1)                 <---------TOE2(3)      <---------RAP2.3(1)           <---------MYB59<---------MYB59                   <---------TOE1(3)     <---------DEAR3(1)           ------->TEIL     --------->AtMYB61                 <---------YAB1<-     --------->ANAC46            ------>MYB83   ------>MYB83                      <---------MYB52(1)    --------->SPL7               ------>MYB46(1)------>MYB46(1)                   <---------ARR14(2)   --------->MYB52(1)          <---------MYB59--------->MYB46(3)                  --------->ARR14(2)   --------->STY1(1)           ------->GAMYB  --------->AtMYB61         <-----------GT1            --   <---------STY1(1)        <-----------GT1   <---------MYB59  <-----------GT1   <-------GAMYB     --   gaaccctacggcgccaaaaatgaggcattttaaccgaacctaaatcgaccaaaccaaaccataatttacattttaaaccattcggttatggttttgctca  9799100                                                                                              -------                                                                                             --------                                                                                    <---------YAB1                                                                             --------->ARR11(3)                                                                             --------->ARR14(2)                            ----------->GT1                                  <---------ARR14(2)         <---------DEAR3(1) <----------ID1                                   <---------ARR11(3) --------MYB59          ---------->DOF2                                   <---------------------WRI1 ------->TOE2(3)      ---------->DOF2     --------->YAB1             --------->ATHB12     <---------TOE2(3) ------->TOE1(3)    --------->MYB46(3) <---------GLK1(1)            --------->MYB46(3)  ---------->DOF2   acctaaatggttcggctcggtaaccaaagagcgaaaaatagaaatcagaaaccagaaaccattagagacaaccattggagatacttactataaaggtgga  9799200                                 <------MYB46(1)                                 <------MYB83                         --------->ANAC58             <------------------SPL14 --------->ATHB12        ----------------->AGL1   <---------ANAC55(2)        <-----------------AGL1  <---------TOE2(3)      <-----------GT1    --------->ANAC55(2)                    <---------ZAT6   <---------ICU4        <---------ANAC55(2)               <-------GAMYB   --------->YAB1        --------->ANAC58                 --------->MYB52(2)  <---------ATHB51       ----------->GT1                  <------MYB83  --------->ICU4         --------->ANAC55(1)         --------->MYB59 <---------TOE2(3)  <---------AHL20(2)  --------->ARR14(2)             <---------AtMYB61  --------->AHL20(2)  <---------ARR14(2)--------->ARR14(1)<------MYB46(1) --------->AHL20(2)--------->ANAC58  <---------YAB1  <---------TOE2(3) <---------AHL20(1)--------->ANAC58  ----------->ARR10  <--------P  ---------->DOF2 -->ZAT18    --------->ZAT2     --------->MYB59      <---------TOE1(3) ->ALFIN1    <---------ZAT2   --------->ICU4  <-------TEIL<---------MYB46(3)<---------ZAT14   caaaataattaccccaactggacggaaacgtaattaggtatgattcggttcagtttaggttggttacagttaaagtagttcagtttcagtttttttgggt  9799300                       <------MYB46(1)                        --------->TOE2(3)                       <------MYB83                         <-------TEIL                       ----------->GT1                   --------->At4g35610                      --------->MYB59                   --------->ANAC46             <---------YAB1              <----------DOF2--------->ANAC58            --------->ARR11(3)         ---------->ID1   <---------------AtSPL8            <---------ARR11(3)        <-----------GT1   --------->ANAC58            <---------TOE2(3)       --------->AHL20(2)   <---------TOE2(3)      <---------YAB1  --------->AHL20(2)       <--------   tttcaaatttttaatatcatttgtttggttaagttttttttttctttttggtttttataagctacataaataaaaactctcaatctaatgttattttttg  9799400                                                                                         --------->AHL20(1)                                                                                         <---------AHL20(1)                             <---------AHL20(2)                  <-----------RAV1(2)     <---------AHL20(2)                            <---------AHL20(2)              --------->AHL20(2)--------->AHL20(2)                            <---------AHL20(1)              <---------ICU4    <---------AHL20(2)                            --------->AHL20(1)           --------->YAB1<------MYB46(1)   --------->ARR11(3)       --------->DAG2       --------->AHL20(2)          <---------YAB1 <------MYB83   --------->AHL20(2)      ---------->DOF2----------->GT1        <---------YAB1  --------->YAB1   --------->AHL20(2) -AHL20(2)     <---------HSFB2a(2)     ---------->DOF2--------->YAB1 <--------P  <---------WOX13(1)   aaaaaccaaaaagtgtttgagaagagaaaataaaattctctaaaagatgatagaattcataataatatcaggttggacatttaattgataaaatattgat  9799500  Previous    Next  AGI:  At5g27680.1    Description:  RECQSIM (Arabidopsis RecQ helicase sim); ATP-dependent helicase. similar to RECQL2 (Arabidopsis RecQ helicase l2), ATP-dependent helicase/ protein binding [Arabidopsis thaliana] (TAIR:AT1G31360.1); similar to putative DNA helicase RecQsim [Brassica napus] (GB:AAO52679.1); similar to putative DNA helicase RecQsim [Oryza sativa (japonica cultivar-group)] (GB:AAO52678.1); similar to putative DNA helicase [Oryza sativa (japonica cultivar-group)] (GB:AAV32197.1); contains InterPro domain DNA helicase, ATP-dependent, RecQ type; (InterPro:IPR004589); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukary Range:  from: 9793793    to: 9798964    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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