Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->ANAC58                                                                             --------->ARR14(2)             <---------GLK1(1)                                              <---------GLK1(1)             --------->CCA1(2)                                              --------->GLK1(1)             --------->GLK1(1)                                          --------->At5g28300         -            --------->ARR11(3)                                         --------->LBD16            ---            <---------ARR11(3)               <----------DOF2         <---------LBD16 --------->ANAC58   --------->YAB1                 ------->TEIL                ------->TEIL ----------->ARR10  <------ -------->YAB1                 <---------MYB52(2)     <------ZmHOX2a(1)----------->GT1      ---------   attgatcatattcagatatcagaaaattttgctacgaaccgaataagctttgctcaggacgatgaatcaaacccggtgaaatctgccaaggcagtaacga  9791900                  <---------TOE2(3)                <-------TEIL               --------->GLK1(2)      --------->HSFB2a(2)      <---------HSFB2a(2)      <---------HSFC1(1)   --------->GLK1(2)  <---------ARR14(2)  --------->ARR11(3)                                                  ----------->RAV1(1)  --------->ARR14(2)                                                 --------->ANAC46  <---------ARR11(3)        --------->ANAC58                --------->TOE2(3)  <---------GLK1(2)         --------->ANAC58        --------->ANAC55(2) ---------->ARR10<-----------RAV1(2)                <---------ANAC55(2) ------->DOF2 <---------ARR14(2)             --------->HSFB2a(2)   --------->AtMYB61 ----ID1      --------->ARR14(2)             ------>ZmHOX2a(1) ---------->DOF2 >MYB52(1)    <---------GLK1(2)              <---------HSFB2a(2)<-----------GT1  <----------ID1   caaagattctcgaacagattcaggtatagcaagcgatactcgagttcctagaatacatatcacattaaaccacaacaccaagagagacaaatacaacgca  9792000                                                                   --------->LBD16                                                                  --------->HSFB2a(2)                                                                  <---------------AGL15                                                                  <---------HSFB2a(2)                                                                  ===================================                                      --------->At4g35610         --------------->AGL15                       --------->YAB1------->TEIL                 <---------HSFC1(1)      <---------ATHB12                       ----------->GT1<---------At4g35610        ----------------->AGL2   --------->ICU4          <---------HSFC1(2)    <---------ANAC58            <---------AHL20(2)       ------->GAMYB<--          --------->HSFC1(2)    <---------ANAC58           --------->AHL20(2)     ----------->RAV1(1)   taatgaagaagatggttcttggtaatagtaacttacttgcatctggattagtactagcatataaaattccagaagtagcagtagcaacagaaatgatgcg  9792100              <---------HSFB2a(2)                                                       --------->ANAC58              --------->HSFB2a(2)                                                       --------->ANAC58           <----------DOF2                                                        --------->AHL20(2)        --------------->AGL15                                                     <---------AHL20(2)  --------->ZAT2                                                               ------>MYB83  --------->At4g35610       <---------At4g35610                              <---------MYB59 =======================MADS_MADS                 <----------ID1          <-----------GT1 -------KAN4(2)      <---------YAB1         --------->LBD16    ----------->GT1 ------>MYB46(1)    ---   aataagctcgcttcttttagaagatgatacagctcttctctaaacccagaaaaaaacaaatgagtcagtgaaattttaaccaaattaaacaagaaattga  9792200                                        --------->ARR14(2)                                <---------ICU4                             --------->YAB1                            <-------TEIL<---------ARR14(2)                    --------->ANAC58             --------->GLK1(2) <---------YAB1            ------>MYB83 <---------HSFB2a(2)    <------- ------>MYB46(3)     ----------->GT1   --------->GLK1(1) ------>MYB46(1)      --------->ANAC58    ---   acaatcgcagagaagaatcgaaccagaaaattcatcatcgcaaatccaagattgaaaccaaacaatttgattctacaagaacgaaattcgaaatcgcgtc  9792300                                             --------->ARR14(2)                                             <---------ARR14(2)                                             --------->GLK1(2)                                            <---------GLK1(2)                                          --------->LBD16                           --------->AtMYB61--------->ARR14(2)                  <---------LBD16        --------->HSFC1(1)                 ------>NtERF2           <---------HSFB2a(2)  --------->AHL20(2)     >>>>>>>>>MYB2   --------->HSFB2a(2)  <---------AHL20(2)--------->LBD16     <---------LBD16  *TSS           --------->MYB52(1) <---------DAG2                                        <---------MYB52(2) --ANAC46       <---------ALFIN1    <----------DOF2       ------->TEIL         ------->GAMYB -------->GT1--------->ANAC46      <---------DAG2<---------ANAC46           --------->MYB52(1)   ttgtttaaattctaaaccccaccggaaaaccaaaaccccttttccagaatctcgtagatgaaccaagaacataaattctaacgggcctatcaactaagcc  9792400                                                          <-----------GT1                                                      <---------ICU4                                 --------->AHL20(2)  <---------YAB1                                 <---------AHL20(2)  --------->ICU4                 --------->ZAT18                           --------->TOE2(3)      <---------YAB1  <---------AHL20(2)--------->ZAT14                     <---------ICU4             --------->ANAC55(2)   --------->AHL20(2)   ------->TEIL                     <--------HAHB4             <---------ANAC46  --------->AHL20(2)<---------ZAT14                     --------->YAB1             <---------ANAC58<----------DOF2 <-----------GT1                    <---------ATHB12            <---------ANAC58--------->TOE2(3) --------->ZAT6  ---------->DOF2 --------->WOX13(1)     --------->ICU4 <---------YAB1<---------AHL20(2)  <---------GLK1(2)   caaacaaagcccaatttgaacaatcattttcttaattaatgtcatgtttttcgtgattattatctactttaattaatgtcattaactgtactgaatcttt  9792500                                                                      --------->AHL20(1)                                                                      <---------AHL20(2)                                      ----------->GT1                 --------->AHL20(2)          ---                                --------->TOE2(3)       --------->ANAC58                         ----                               --------->ANAC46         --------->ANAC46                         <---                        <---------AHL20(2)              --------->ANAC58             ----------->GT1                        --------->AHL20(2)         <---------------AtSPL3       --------->At4g35610 <-------MYC3          <---------ATHB12   <---------AHL20(2)         --------->AHL20(2) <-----------GT1 ------->MYC3        --------->WOX13(1)   --------->AHL20(2)    --------->LBD16 <---------At4g35610 <   ccatgtgtataccaaaaccatttcaattaatccacctaaattgtttaaatcaacaagtacgaaacccagaaattaattagacagatgaagttactaatcc  9792600            <-----------GT1        <---------AHL20(2)        <---------ICU4        --------->AHL20(2)                                                                          -        --------->ATHB51                                                                           <-       --------->ICU4                --------->YAB1                                                --    --------->AHL20(2)           --------->MYB46(3)                                               <-- ------>LBD16                --------->DOF5.7(2)                                             <------- ----->HSFB2a(2)           <---------ANAC58  --------->At4g35610                            <-------- ------HSFB2a(2)           <---------ANAC46<---------ICU4                 --------->AtMYB61 --------- ---------ARR11(3)         <---------ANAC58--------->YAB1   <-----------GT1     ---------->DOF2   ---   cagaacttaattattttccattacaaattgcgttaacaaacataatcatcttcccatggtttttacataagacaaaccaaaacaaagagaagaagatttc  9792700                                                                           <-----------GT1               ------>ZmHOX2a(1)                                     --------->LBD16     ------>MYB46(1)                                               ------>ZmHOX2a(2)     ------>MYB83                                                 --------->ARR14(1)   <---------MYB59                                                --------->CCA1(2) -------->GLK1(1)                                                <---------ARR14(2) --------ARR14(2)                                                <---------ARR11(3) ------->ARR14(2)                                                --------->ARR14(2)   ----------->RAV1(1) -------At4g35610                                    <<<<<<<<<TBF1<------ZmHOX2a(2)--------->ANAC46 --GLK1(1) <---------ARR14(2)                     <<<<<<<<<TBF1  --------->AGP1    --------->ANAC58 -ARR11(3) --------->ARR14(2)                  <<<<<<<<<TBF1     --------->ARR11(3)--------->ANAC58 >ARR11(3)--------->GLK1(1)                 <<<<<<<<<TBF1      ----------->ARR10  --------->DAG2 ------>At4g35610                        <<<<<<<<<TBF1     <---------At4g35610   ---------->DOF2   agatacctacacaaatcctctaaaacaaaaaacaagttgtttcttcttcttcttcttcttcatctaagatccgaatataaccaaaaagcaacatcgatac  9792800  Previous    Next  AGI:  At5g27660.1    Description:  serine-type peptidase/ trypsin. Identical to Putative protease Do-like 14 (DEGP14) [Arabidopsis Thaliana] (GB:Q3E6S8); similar to DEGP1 (DEGP PROTEASE 1), serine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G27925.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17544.1); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478) Range:  from: 9789902    to: 9792302    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g27670.1    Description:  HTA7; DNA binding. Identical to Probable histone H2A.5 [Arabidopsis Thaliana] (GB:Q94F49); similar to HTA12, DNA binding [Arabidopsis thaliana] (TAIR:AT5G02560.1); similar to histone H2A [Brassica napus] (GB:CAB53509.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119) Range:  from: 9792564    to: 9793459    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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