Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             -------->P                      ------->GAMYB                     --------->MYB46(3)              <---------AHL20(2) -------->TOE1(3)    <---------MYB52(2) -------->TOE2(3) <----------ID1                               <---------ICU4 ------->ZAT6 --------->AHL20(2)                               --------->YAB1   ----------->GT1   aaccctaaacaagtattaaaacaacaaactaccatggccaaatgttcaaagactaaaactttgaatcatcactcccactataatgtaaatctaaaaccat  9785000                                                       ----------->HVH21                                                 ----------->RAV1(1)                                                --------->MYB46(3)                                              ----------->RAV1(1)                                              =================RAV                                              ------>MYB46(1)                                              ------>MYB83                 --------->ZAT14            --------->MYB46(3)             <-----------GT1               --------->ANAC58         <---------ICU4                    --------->ANAC58         -------->ATHB1                  <<<<<<<ZML2 --------->At4g35610        --------->ICU4                <---------HSFB2a(2)      ----------->GT1        --------->AHL20(2)            --------->HSFB2a(2)    ----------->GT1        ------>ZmHOX2a(1)        <---------ATHB51         <---------AHL20(2)  ----------->GT1              <---------LBD16  --        <---------AHL20(2)      --------->AHL20(2) <-----------RAV1(2) ----------->GT1            <--   gcctatagaaattattaactatactctagttttatttaatctagaacccaacaacaggtgaaatggagaaaaatggcaaaattttcctgaaggctctctt  9785100                                                                                         --------->ANAC58                      ------>ZmHOX2a(1)                                                  --------->ANAC58                    ------>ZmHOX2a(2)                                               --------------->AtSPL3                   <------ZmHOX2a(2)                                                --------------->AtSPL8                  <---------ARR11(3)                                                <----------------                  --------->ARR11(3)                                                <---------------AtSPL8                  <---------ARR14(2)                                            --------->ANAC58               <---------HSFB2a(2)          <----------ID1                      --------->ANAC58 ------->ARR11(3) --------->ARR14(2)      ---------->DOF2       --------->ZAT6--------->CCA1(2)     - -------CCA1(2)--------->HSFB2a(2)<-------TEIL       <----------ID1    <<<<<<<<<<GATA-1 ------->TEIL<   atatctattgcatcgttctggatcctgtctcatagctacataagaaaagacaaaaaaaacaaatgaacactgaaatcgagataagaaacgtacccaatac  9785200                                                                                                    -                                                                                                 ----                                                                                                 <---                                                                                               <-----                                                                                              <------                                                                                            <--------                                                                                           <---------O2                                             --------->ALFIN1                              <---------TGA1a                                      <----------DOF2                                      --------->O2                                     <-------GAMYB                                         *TSS<-----                                    <---------MYB46(3)                                     <---------bZIP60(1)                                  <------NtERF2                                         ----------->HVH21                                 <---------ORA47(2)                                     --------->ANAC46                                 <---------DEAR4(2)                                    --------->SPL7     --------->At4g35610         <---------RAP2.3(1)                                 --------->TOE1(2)     <---------At4g35610         <---------ATERF1(1)                                 --------->TOE2(2)  <------ZmHOX2a(2)             <---------DEAR3(1)                                 ================== --------->ARR11(3)             <---------RAP2.3(2)                                <------ZmHOX2a(2)- <---------ARR11(3)             <---------RAP2.3(3)                        <----------DOF2 --------->bZIP60(1) -------TaNAC69(2)              --------->ANAC46        <------ZmHOX2a(1)  ==========================bZIP_DOF -------->GLK1(1)               <---------RRTF1(3)      ==================================HOX2a_HOX2a ---------GLK1(1)    ---------->DOF2------>NtERF2<------ZmHOX2a(1)      --------->ARR11(3) --------->TGA1a   agagatcagccgagagcaaaaaacaaagaagaagacggcgcttgaaggtgaggaagaaggagcgattgttttcaggtctttttggatcatacgacgtcgg  9785300                                                                     <---------AHL20(2)                                                                     <---------AHL20(1) ------>ZmHOX2a(1)                   --------->ANAC58                --------->AHL20(2) -------->TOE2(3)               --------->LBD16               <---------ARR14(2) ----->ARR14(2)       <---------AHL20(2)                      --------->ARR11(3) ------ARR14(2)       --------->AHL20(2)------------>CBF      --------->AGP1 ----MYB46(3)     --------->AHL20(2) --------->ANAC58         <---------AGP1 <----------DOF2 ---DEAR3(1)  --------->AHL20(2)<------NtERF2           <---------ICU4 <------------CBF ---HVH21     ----------->TBP  <---------ANAC46        --------->ICU4--------->AHL20(1) ----DEAR3(2) <---------YAB1  <---------LBD16------------>CBF <---------ARR11(3) =======HOX2a_HOX2a <-----------TBP<--------P--------->AHL20(2)<------ZmHOX2a(2)            <-------- -------->TOE1(3) <---------AHL20(2)--------->SPL7--------->YAB1------>ZmHOX2a(2)           <--------   ttccttaaacgggcttataaatatttatatgggccgggtaagcccaattcaatagtaatcagtagatctaatttattgtctttctctcgattagcttttt  9785400                                                --------->ARR14(2)                 <---------REM1(1)                                            ----------------->AG                   <-----------RAV1(1)                                            ----------------->AGL3                 <---------MYB46(3)                                            ----------------->AGL2         <-------GAMYB                                       <---------HSFB2a(2)                <---------MYB46(3)             --------->GLK1(2)   <---------ZAT18<---------ARR14(2)      <---------ARR14(2)            --------->YAB1    <------MYB83  <-----------------AG        <---------ARR11(3)          *TSS    <---------CCA1(2)    --------->HSFB2a(2)              --------->ARR11(3)         --------->YAB1       <---------ANAC58 ------>MYB83             --------->ARR14(2)        --------->ZAT6        <------MYB46(1)<---------MYB59           <------ZmHOX2a(1)<---------ANAC58 -DAG2<-----------GT1 <----------DOF2------>ZmHOX2a(1)   --------->GLK1(2)------>ZmHOX2a(2)      <--- --DOF2------------>CBF       <---------ANAC58 ------>MYB46(1)       <---------TOE1(2)  <---------ANAC58   tttttttttaacaataatccgtctctttcatttggtgtcctcgagaaccaaattcggataatctctcatcggaggatcgttgttgttgttgctagggttc  9785500                                                                                                  <--                                                                                       ------>ZmHOX2a(1)                                                                                     ------>ZmHOX2a(2)                                                                       --------->ARR14(2) -----------                                                                       <---------ARR14(2)<---------TOE1(3)                                                                  --------->MYB52(1)<------ZmHOX2a(2)                                                                <---------MYB55(2) <---------ARR11(3)                               <---------LBD16                  <---------MYB52(2) --------->ARR11(3)                         --------->AHL20(2)             <---------WOX13(1)         <---------ARR14(2)          --------------->AtSPL8 --------->LBD16     <---------YAB1    <---------GLK1(2) <---------TOE2(3)          <---------------AtSPL8--------->LBD16<---------ARR14(2)------->GAMYB     --------->ARR14(2) ------YAB1----------->GT1<---------AHL20(2)  <------ZmHOX2a(1) --------->MYB46(3)<------ZmHOX2a(1) <   ttatcgatttgtaatgtacaaaactaaattaatcccggtgatgaacgaggatgctgtgattgttcaacaaacggattcgattcaggatcctaaggtaact  9785600                                                                                           <---------ARR14(2)                                                                                          --------->At5g28300                                                                                          <-------GAMYB                                                                                         ----------->GT1                                                                                         <---------MYB46(3)                                                                                         <---------DEAR3(2)                                                                                        <---------DEAR3(1)                                                  <---------YAB1                      ------------>AtMYB77                                                --------->YAB1                       <---------DEAR3(1)                                               --------->ICU4                       <-------TEIL  ---                                               <---------YAB1                      --------->ARR14(1)                                              <---------TOE2(3)                   <---------GLK1(2)         --------->ZAT14              --------->ANAC58                            --------->ARR14(2) ---------RAV1(2)                     --------->ANAC58      --------->HSFC1(2)    --------->ARR11(1) >GT1    <---------ZAT14           --------->ANAC46     <---------REM1(1)         <---------ARR14(2) ---------At4g35610         <---------KAN4(2)--------->YAB1 <---------HSFC1(2)  ----------->ARR10 ---   ccagatgatactgtagttgattcgagcggggatgttcacgaagccattgatgatgatgttgaagcttcttcacctatggagctagattcggcggttacaa  9785700                           ------>ZmHOX2a(2)            <---------HSFC1(1)              <---------SPL7            --------->HSFB2a(2)            <---------ANAC46   --------->At4g35610            <---------HSFB2a(2)            <---------ANAC58   <---------At4g35610                 ---            --------->HSFC1(1)            <------NtERF2 <------ZmHOX2a(1)                       <---- --------->ANAC58          ====================================HOX2a_HOX2a                <---------WOX13(1) --------->ANAC58         =====================================HOX2a_HOX2a             <---------AHL20(2) -------->TGA1            <------ZmHOX2a(2)<---------ANAC58<------ZmHOX2a(1)    <------ZmHOX2a(1) <-- -------->HVH21---------->DOF2  ---------->DOF2     --------->ALFIN1    ---------->DOF2<---------YAB1   atgacgctagggttctcgaaagtgagagatcggagaaagatggtgtcgtagggagtgaggaggaagatgagattaaaagcgaggatgttttaattgataa  9785800                                                                      <------MYB83                                                                  --------->At4g35610                                                                  <---------ZAT2                                                                  <---------At4g35610        <---------GLK1(1)    >>>>>>>>>TBF1                      --------->ZAT18   <---------YAB1         >>>>>>>>>TBF1                 --------->WOX13(1)     <---------At4g35610 ------>YAB1  <---------TOE2(3)                    <---------YAB1 --------->ZAT2  --------->At4g35610 -----TOE2(3) <---------TOE1(3) >>>>>>>>>TBF1    <---------At4g35610  <------MYB46(1)           ----- ----ZmHOX2a(1)    ---------->DOF2 >>>>>>>>>TBF1 --------->YAB1 <---------ZAT18--------->At4g35610 --   ggatgatgagagttctgaggttaaagaagaagaagaagaagaagatggctctgatgatcaatctagtgagcttggttctgaagctgatgagaaggaatta  9785900  Previous    Next  AGI:  At5g27640.1    Description:  TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B); nucleic acid binding / translation initiation factor. Identical to Eukaryotic translation initiation factor 3 subunit B (TIF3B1) [Arabidopsis Thaliana] (GB:Q9C5Z1); similar to EIF3B-2 (eukaryotic translation initiation factor 3B-2), nucleic acid binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G25780.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76773.1); similar to unknown [Picea sitchensis] (GB:ABK25119.1); similar to hypothetical protein OsI_033539 [Oryza sativa (indica cultivar-group)] (GB:EAY79580.1); contains InterPro domain Eukaryotic translatio Range:  from: 9781013    to: 9785291    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g27650.1    Description:  PWWP domain-containing protein. similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G05430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17548.1); contains InterPro domain PWWP (InterPro:IPR000313) Range:  from: 9785410    to: 9789235    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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