Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <------MYB83                                                                                      <------MYB46(1)                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                           <---------ARR11(3)                                                                           --------->ARR11(3) ------------AGL15                                           --------->GLK1(2)   --------->DAG2 ------------>AGL3                               --------->AHL20(2)        <---------AGP1 -->ANAC58                                       <---------AHL20(2)        --------->AGP1           - -->ANAC58                                ----------->GT1    <---------ARR11(3) ---------->DOF2    -- ->DOF2            <----------DOF2 <----------DOF2   ----------->GT1  <----------DOF2--------->MYB59-   catatagagagagctatcagtctttaacacattccaactttaagtcgataaataaatgtgaaaaatctgagtctttagatctaaaagtaggttttttgtt  9784900                           -------->P                      ------->GAMYB                     <---------MYB52(2)              --------->AHL20(2) -------->TOE2(3)    --------->MYB46(3) ------->ZAT6 <---------AHL20(2)                               <---------ICU4 -------->TOE1(3) <----------ID1                               --------->YAB1   ----------->GT1   aaccctaaacaagtattaaaacaacaaactaccatggccaaatgttcaaagactaaaactttgaatcatcactcccactataatgtaaatctaaaaccat  9785000                                                       ----------->HVH21                                                 ----------->RAV1(1)                                                --------->MYB46(3)                                              ------>MYB83                                              ------>MYB46(1)                                              ----------->RAV1(1)                                              =================RAV                 --------->ZAT14            --------->MYB46(3)             <-----------GT1               --------->ANAC58         <---------ICU4                    --------->ANAC58         -------->ATHB1                  <<<<<<<ZML2 --------->At4g35610        --------->AHL20(2)            --------->HSFB2a(2)      ----------->GT1        <---------ATHB51              <---------HSFB2a(2)    ----------->GT1        ------>ZmHOX2a(1)        --------->ICU4           <---------AHL20(2)  ----------->GT1              <---------LBD16  --        <---------AHL20(2)      --------->AHL20(2) <-----------RAV1(2) ----------->GT1            <--   gcctatagaaattattaactatactctagttttatttaatctagaacccaacaacaggtgaaatggagaaaaatggcaaaattttcctgaaggctctctt  9785100                                                                                         --------->ANAC58                      ------>ZmHOX2a(1)                                                  --------->ANAC58                    ------>ZmHOX2a(2)                                               <----------------                   <------ZmHOX2a(2)                                                --------------->AtSPL3                  --------->ARR11(3)                                                --------------->AtSPL8                  --------->ARR14(2)                                                <---------------AtSPL8                  <---------ARR14(2)                                            --------->ANAC58               <---------HSFB2a(2)          <----------ID1                      --------->ANAC58 ------->ARR11(3) <---------ARR11(3)      ---------->DOF2       --------->ZAT6--------->CCA1(2)     < -------CCA1(2)--------->HSFB2a(2)<-------TEIL       <----------ID1    <<<<<<<<<<GATA-1 ------->TEIL-   atatctattgcatcgttctggatcctgtctcatagctacataagaaaagacaaaaaaaacaaatgaacactgaaatcgagataagaaacgtacccaatac  9785200                                                                                                    -                                                                                                 ----                                                                                                 <---                                                                                               <-----                                                                                              <------                                                                                            <--------                                                                                           <---------TGA1a                                             --------->ALFIN1                              --------->O2                                      <----------DOF2                                      *TSS<-----                                     <-------GAMYB                                         <---------bZIP60(1)                                    ------>NtERF2                                          --------->bZIP60(1)                                  <------NtERF2                                         ----------->HVH21                                 <---------ATERF1(1)                                    --------->ANAC46                                 <---------DEAR4(2)                                    --------->SPL7     <---------At4g35610         <---------ORA47(2)                                  --------->TOE1(2)     --------->At4g35610         <---------RAP2.3(1)                                 --------->TOE2(2)  <------ZmHOX2a(2)             <---------RAP2.3(2)                                <------ZmHOX2a(2)- --------->ARR11(3)             <---------DEAR3(1)                                 ================== <---------ARR11(3)             <---------RAP2.3(3)                        <----------DOF2 --------->TGA1a -------TaNAC69(2)              <---------RRTF1(3)      ==================================HOX2a_HOX2a ---------GLK1(1)               --------->ANAC46 <------ZmHOX2a(1)      --------->ARR11(3) <---------O2 -------->GLK1(1)    ---------->DOF2<---------MYB46(3)  <------ZmHOX2a(1)  ==========================bZIP_DOF   agagatcagccgagagcaaaaaacaaagaagaagacggcgcttgaaggtgaggaagaaggagcgattgttttcaggtctttttggatcatacgacgtcgg  9785300                                                                     --------->AHL20(2)                                                                     <---------AHL20(2) ------>ZmHOX2a(1)                   --------->ANAC58                --------->AHL20(1) -------->TOE2(3)               --------->LBD16               <---------AGP1 ----->ARR14(2)       --------->AHL20(2)                      --------->AGP1 <----------DOF2 ------ARR14(2)       <---------AHL20(2)------------>CBF      --------->ARR11(3) ----MYB46(3)     --------->AHL20(2) --------->ANAC58         <---------ARR11(3) ---DEAR3(1)  <---------YAB1   <---------ANAC46         <---------ICU4 <------------CBF ---HVH21     --------->AHL20(2)<------NtERF2          --------->ICU4<---------AHL20(1) ----DEAR3(2) ----------->TBP <---------LBD16------------>CBF <---------ARR14(2) -------->TOE1(3) <---------AHL20(2)--------->SPL7--------->YAB1------>ZmHOX2a(2)           <-------- =======HOX2a_HOX2a <-----------TBP<--------P--------->AHL20(2)<------ZmHOX2a(2)            <--------   ttccttaaacgggcttataaatatttatatgggccgggtaagcccaattcaatagtaatcagtagatctaatttattgtctttctctcgattagcttttt  9785400                                                <---------ARR14(2)                 <-----------RAV1(1)                                            ----------------->AGL2                 <---------REM1(1)                                            <-----------------AG                   <---------MYB46(3)                                            ----------------->AG           <-------GAMYB                                       --------->HSFB2a(2)                ------>ZmHOX2a(2)             --------->GLK1(2)   <---------ZAT18--------->ARR14(2)      <---------ARR14(2)            --------->YAB1    <------MYB46(1)<---------MYB59            --------->ARR11(3)          *TSS    <---------CCA1(2)    <---------HSFB2a(2)              --------->ARR14(2)         --------->YAB1       <---------ANAC58 ------>MYB46(1)          <---------ARR11(3)        --------->ZAT6        <------MYB83  ----------------->AGL3     <------ZmHOX2a(1)<---------ANAC58 --DOF2------------>CBF       <---------ANAC58 ------>MYB83          <---------TOE1(2)  <---------ANAC58 -DAG2<-----------GT1 <----------DOF2------>ZmHOX2a(1)   --------->GLK1(2)<---------MYB46(3)     <---   tttttttttaacaataatccgtctctttcatttggtgtcctcgagaaccaaattcggataatctctcatcggaggatcgttgttgttgttgctagggttc  9785500                                                                                                  <--                                                                                       ------>ZmHOX2a(1)                                                                                     ------>ZmHOX2a(2)                                                                       --------->ARR14(2) -----------                                                                       <---------ARR14(2)<---------TOE2(3)                                                                  --------->MYB52(1)<------ZmHOX2a(2)                                                                <---------MYB55(2) <---------ARR11(3)                               <---------LBD16                  --------->MYB46(3) --------->ARR11(3)                         --------->AHL20(2)             <---------WOX13(1)         --------->ARR14(2)          --------------->AtSPL8 --------->LBD16     <---------YAB1    <---------GLK1(2) <---------TOE1(3)          <---------------AtSPL8--------->LBD16<---------ARR14(2)------->GAMYB     <---------ARR14(2) ------YAB1----------->GT1<---------AHL20(2)  <------ZmHOX2a(1) <---------MYB52(2)<------ZmHOX2a(1) <   ttatcgatttgtaatgtacaaaactaaattaatcccggtgatgaacgaggatgctgtgattgttcaacaaacggattcgattcaggatcctaaggtaact  9785600                                                                                           <---------ARR14(2)                                                                                          --------->At5g28300                                                                                          <-------GAMYB                                                                                         <---------DEAR3(2)                                                                                         ----------->GT1                                                                                         <---------MYB46(3)                                                                                        <---------DEAR3(1)                                                  <---------YAB1                      ------------>AtMYB77                                                --------->YAB1                       <---------DEAR3(1)                                               <---------YAB1                       <-------TEIL  ---                                               --------->ICU4                      --------->ARR14(1)                                              <---------TOE2(3)                   <---------GLK1(2)         --------->ZAT14              --------->ANAC58                            --------->ARR14(2) ---------RAV1(2)                     --------->ANAC58      <---------HSFC1(2)    --------->ARR11(1) >GT1    <---------ZAT14           --------->ANAC46     <---------REM1(1)         <---------ARR14(2) ---------At4g35610         <---------KAN4(2)--------->YAB1 --------->HSFC1(2)  ----------->ARR10 ---   ccagatgatactgtagttgattcgagcggggatgttcacgaagccattgatgatgatgttgaagcttcttcacctatggagctagattcggcggttacaa  9785700                           ====================================HOX2a_HOX2a            <---------HSFC1(1)            <---------HSFB2a(2)            <---------ANAC58            --------->HSFC1(1)             <---------ANAC58   --------->At4g35610                 <--            --------->HSFB2a(2)           <------NtERF2 <------ZmHOX2a(1)                       <---- --------->ANAC58          ------>ZmHOX2a(2)<---------SPL7    <---------At4g35610         <---------WOX13(1) --------->ANAC58         =====================================HOX2a_HOX2a             <---------YAB1 -------->HVH21           <------ZmHOX2a(2)<---------ANAC46<------ZmHOX2a(1)    <------ZmHOX2a(1) --- -------->TGA1 ---------->DOF2  ---------->DOF2     --------->ALFIN1    ---------->DOF2<---------AHL20(2)   atgacgctagggttctcgaaagtgagagatcggagaaagatggtgtcgtagggagtgaggaggaagatgagattaaaagcgaggatgttttaattgataa  9785800  Previous    Next  AGI:  At5g27640.1    Description:  TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B); nucleic acid binding / translation initiation factor. Identical to Eukaryotic translation initiation factor 3 subunit B (TIF3B1) [Arabidopsis Thaliana] (GB:Q9C5Z1); similar to EIF3B-2 (eukaryotic translation initiation factor 3B-2), nucleic acid binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G25780.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76773.1); similar to unknown [Picea sitchensis] (GB:ABK25119.1); similar to hypothetical protein OsI_033539 [Oryza sativa (indica cultivar-group)] (GB:EAY79580.1); contains InterPro domain Eukaryotic translatio Range:  from: 9781013    to: 9785291    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g27650.1    Description:  PWWP domain-containing protein. similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G05430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17548.1); contains InterPro domain PWWP (InterPro:IPR000313) Range:  from: 9785410    to: 9789235    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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