Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->At5g28300                                                            ----------->GT1                             ------->TEIL                   <---------DEAR3(2)                          --------->ANAC46       --------->YAB1                             <--------                          --------->ANAC55(1)    --------->ANAC55(2)                        <-------- ------>TOE1(3)        <-------TEIL              --------->ANAC46                           --------- --->GLK1(1)         <---------ARR14(2)    <---------ANAC55(2)                              --------- ----GLK1(1)         --------->ARR14(2)    <---------ANAC46--------->ETT(1)                <---------AHL20(2) ---ARR14(2)       ----------->GT1         --------->ANAC55(2)           <-------TEIL      --------->AHL20(2) -->ARR14(2)    --------->MYB52(1)         <---------ANAC55(1)       <---------TOE2(3)  --------->WOX13(1)   cctgaaatatcgaaactcaaacggatacatgtaactcgaaataatacgtatacataatttgtcggtaaattcaggttcaatatcaggtttcaattaaatt  9770900      ------>MYB46(1)      -------->P                              ------>ZmHOX2a(1)                                     <      ------>MYB83                   <-----------GT1                                                - -AHL20(2)                       <---------RVE1(1)                                                  < -AHL20(1)                      <---------MYB52(1)      <-----------GT1                           <xx >AHL20(2)                   --------->MYB46(3)      ------->TEIL      ---------->DOF2      --------- >AHL20(1)  ------->TEIL--------->AtMYB61    --------->TOE2(3)   <----------DOF2            >>>>>>>>>RAP2.2   tgagaaccagcccgaacccgaatagacctcaaccgatattttcagttcctaaatgtattttcaatctctttaccaaagtaacccaaaaacccaatctaaa  9771000                 <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->GLK1(2)        --------->ARR14(2)        <---------ARR14(2)       --------->GLK1(1)       <---------GLK1(1)       xxxxxxxxxxxxxxxx>smallRNA(s)      ---------->DOF2     ------>MYB83     <xxxxxxxxxxxxxxxxsmallRNA(i)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        --------->ZAT6    --------->LBD16       --------->MYB52(1)                    <-----------GT1   --------->ANAC58     <---------MYB59                       <---------WOX13(1)   --------->ANAC58     <---------MYB46(2)                  --------->ATHB12                 <------- ---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------WOX13(1)                 -------- -------->ARR14(2) --------->HSFB2a(2)                  --------->ATHB12                  --------->GLK1(2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   -------->HAHB4                   <---------GLK1(2) xxxxxxxxxxxxxxsmallRNA(s)------>MYB46(1)              <---------YAB1                  ----------->ARR10 >TOE2(3)     <---------KAN4(2)                        --------->ICU4          <----------DOF2  -----   cagacccgaaaatccgaatgtccagacctaactaaaatcgtgagtcaaactcaaaaaatgattgattaacactatattatacttttacttagattctata  9771100                                                                       <---------HSFB2a(1)                                                                   <------MYB46(1)                                                                   <------MYB83                                                      <---------MYB59  <---------HSFC1(2)                                    --------->TOE2(3) --------->TOE2(3)--------->HSFC1(2)                              <------MYB46(1)       <---------ARR11(3) --------->HSFB2a(1)       <-------MYC3         <--------P--------->AHL20(2)  <---------YAB1       ------->MYC3     <---------TOE2(3)    --------->ANAC46    <--------P --------AGL15          <---------TOE1(3)    --------->ANAC58   <-------GAMYB  ---------->ID1 ------->AGL15       <---------YAB1--------->YAB1 ----------->HVH21----------->GT1              ----- ---->AHL20(2)   <-------GAMYB<------MYB83   --------->ANAC58  <---------MYB46(3) <----------DOF2   aattggacacatgtatgggtgttattaagggttggaaacataaatttaagccatgaccttatttttggttggaaaattcttgttcttttttttgttagta  9771200                                             <---------YAB1                                           --------->YAB1                                         <---------MYB52(1)                                     ------>NtERF2                                 --------->ANAC58                                 --------->ANAC46                                 --------->ANAC58    <-------GAMYB               --------->SPL7--------->YAB1    --------->At5g28300     <---------At4g35610  <---------AHL20(2)         <---------WRKY18(1)   <---------MYB46(3)       --------->At4g35610 --------->AHL20(2)         --------->WRKY12   ----------->GT1       <--------P <---------ALFIN1  <---------YAB1       ----------->HVH21 ----->DOF2     <----------DOF2--------->MYB52(1)<---------ICU4  --------->ANAC46        <-----------   aagggctgttaataagggttttaatgggttagcgaacgacaccgtttataataaatatgtttgctaaacgacatcgtttgaccttagggtttattgttta  9771300                                                            <------ZmHOX2a(2)                                                           --------->ARR11(3)                                                           <---------ARR11(3)                                                --------->ANAC58                                                --------->ANAC58                                                --------->ANAC46   <---------SPL7                                        --------->ANAC58 --------->HSFB2a(1)                             <<<<<<<<<TBF1    ---------->DOF2------>ZmHOX2a(2)                           *TSS     --------->ANAC58     <---------HSFB2a(1)                     ------>MYB46(1)--------->ANAC58  <------ZmHOX2a(1) --------->ANAC46                     ------>MYB83  =================================HOX2a_HOX2a               -------                   --------->DEAR3(1)   --------->ANAC58<---------KAN4(2)                     <------                <-----------GT1    ------>ZmHOX2a(1)  ==============HOX2a_HOX2a           --------->ZAT6  ---------->DOF2 --------->MYB46(3)--------->ANAC46  =============HOX2a_HOX2a   >>>>>>>>>>AtTINY2 -CBF       <---------DEAR3(2)     ================================HOX2a_HOX2a   <---------ETT(1)   acatgaaagaacgtcgtttcaccaacgtttcttcttcctcgcaagtctcaaagccaggaacgatctcgccgtatgagcaacttccgacattaacactgta  9771400                                                                       <---------At4g35610                                                            <---------ARR11(3)                                                            <---------ARR14(3)                                                            --------->ARR11(3)                                                            --------->AHL20(1)                                                            <---------AHL20(1)                  <----------DOF2                           <---------ARR14(2)                ------>ZmHOX2a(1)                           --------->ARR14(2)       <---------RAP2.6(3)                                  --------->ARR14(3)       <---------SPL7                                     ----------->ARR10      <---------ANAC58                                    --------->ANAC58      <---------ANAC46                                    --------->ANAC58    ------>ZmHOX2a(1)      <---------ANAC58---------->ID1                 <---------ETT(1)  --------->At4g35610     --------------->AtSPL3                      --------->GLK1(1)<---------ANAC46    ------>NtERF2 <---------DAG2                 <---------GLK1(1)<---------ANAC58 -->ZAT14--------->SPL7                     --------->At4g35610   <---------RAP2.6(2) ---ZAT14--------->ZAT14                    <---------At4g35610   <---------ANAC58   ttgctctgccgtactctcctctttttcccttcatactcgtcttcacatctgaattccgacaagatattgcgtctgctctcctctcttccctcattctcgt  9771500                              <---------MYB59                             <---------At4g35610                             --------->At4g35610                        <---------HSFB2a(2)                                   --------->AHL20(2)                        --------->HSFB2a(2)                                   <---------ICU4               --------->ARR11(3)                                   ----------->RAV1(1)------>ZmHOX2a(1) <---------YAB1<---------ARR11(3)                       --------->AtLEC2      <---------AHL20(2)   cttctcattaccaaaaacatcttcttctcgtagctaactcaatccaattccaatctccattcaaatcgagcaccagataattttttctcctaaattctaa  9771600                                        ------>ZmHOX2a(1)                                  --------->GLK1(2)                            <---------ARR14(2)                                 <---------GLK1(2)                        --------->ALFIN1                         --------->ARR11(3)                             <---------ANAC58                         <---------ARR11(3)                             <---------ANAC58           <-                        --------->CCA1(1)                               <---------ANAC46   <---------ARR11(3)                        --------->RVE1(1)               <----------TaMYB80----------->GT1  --------->GLK1(2)                   ----------->GT1<-----------ARR10  ----------->GT1  ------->GAMYB  <------ZmHOX2a(2)   tataagccctaaaattcaaaattgaaatatctatagaatctccttccgattcagacggataatcgccatcaacagcgtgtgaattcgatcaaaaatctga  9771700                                                                     --------->GLK1(1)                                                                    <---------ARR14(2)                              <-----------GT1                       --------->ARR14(2)                          <---------GLK1(2)                         <---------GLK1(2)               <                          --------->ARR11(3)                       <------NtERF2               <-----                    <---------At4g35610                          <---------ANAC58              ------                    --------->At4g35610                          <---------ANAC46        ------->GAMYB      ---------->DOF2   ----------->ARR10                        <---------ANAC58     --------->MYB52(1) ---------DOF2   ---------->DOF2                                <---------LBD16    --------->ANAC46 -   actttccacaaagaaattcgaaagctcagatttttcgatttcgaaaattttgaaaactcagttaatggcggattttcagacatcaacacaacgggccaag  9771800  Previous    Next  AGI:  At5g27620.1    Description:  CYCH;1 (CYCLIN H;1); cyclin-dependent protein kinase/ protein binding / protein kinase. Identical to Cyclin-H1-1 (CYCH1-1) [Arabidopsis Thaliana] (GB:Q8W5S1); similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G48640.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96417.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Cyclin H (InterPro:IPR015432); contains InterPro domain Transcription regulator cyclin (InterPro:IPR015429); contains InterPro domain Transcription factor TFIIB, cyclin-related; (InterPro:IPR0131 Range:  from: 9771327    to: 9774878    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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