Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------AHL20(2)                                            --------->AHL20(2)                                            --------->ATHB51         ----------->GT1                 --------->TOE1(3)     --------->AHL20(2)                  --------->YAB1                    <---------YAB1     <---------AHL20(2)        --------->MYB52(1)                    <---------------------WRI1     --------->AHL20(1)     --------->TOE1(3)   --------->AHL20(2)<-----------RAV1(2)    --------->AHL20(2)    ------->TEIL   --------->TOE2(3)      <-----------HVH21          --------->AHL20(2)   atccaaaaaaattgaaaaacccaaactgaaccctaacgtctaaccataatttaaatgatgtaaacgggtcagacggtatgatcaaacaaacaaaaaaatc  9717100                                                                                                 <---                                                         ----------->GT1                        <----                      ------->TEIL               --------->YAB1                                 -----                --------->ICU4                   <------ZmHOX2a(1)                              <----            --------->AHL20(2) ----------->GT1  ----------->GT1                                 -----          ----------->GT1<---------YAB1        <---------TOE2(3)                             --------        ---------->DOF2 --------->AHL20(2)   ---------->DOF2       <---------AHL20(1)      --------->AHL20(2)   <---------ZAT6  <---------YAB1           <---------AHL20(2) <---------AHL20(2)   ----------->GT1 <   aagtagttttaaaagtaaattatgaatattatacagaaaatatgaattaaaggataatacagtatataatatatgttgaaatagacaggtaaaaaaaata  9717200                                                                         --------->AHL20(1) ------AHL20(2)                                                          <---------AHL20(1) -----AHL20(2)                                                   --------->At4g35610 ---->AHL20(2)                                                   <---------At4g35610              --- -----AHL20(1)                                               <---------REM1(1)           <---------YAB1 ---->AHL20(1)                  --------->AHL20(1)   --------->TOE2(3)   --------->AHL20(2)  -------- ->AHL20(2)            ----------->GT1     ----------->GT1<-----------RAV1(1) <---------At5g28300---- ---------YAB1   <------------CBF    <---------AHL20(2)  <---------TOE2(3)   <-----------GT1<--------   taatgaatgatgcgaaacaaattgatagtaaaaacatattaaaaatggttaaaaacataaatgttgtagctgaaatattttactgcataatatgattata  9717300                                      --------->ANAC46                                      --------->ANAC58     ------------>CBF         <---------AHL20(2)                                                  <-- -------->GT1                 --------->AHL20(2)                 ------->GAMYB                   <--- ->YAB1                   --------->AHL20(2)<---------ZAT14     <----------ID1         --------->ANAC58 ------->GT1          --------->ANAC46--------->ANAC58----------->GT1                  --------->ANAC58 -YAB1<---------ICU4  <----------ID1 <---------LBD16---------->DOF2                  <---------ALFIN1   agttaaaatcaatacaaattttagacgaaaaaataaatacacggactgtacatgaaaagtataacaacgacaaaactggtgtatcacacacccatgcggt  9717400                                                                                                   <-                                                <----------DOF2                                  <---                                              ---------->ID1                  --------->ZAT18    ----                                             <-----------GT1          --------->YAB1            -----                                         <----------DOF2          <---------AHL20(2)         --------   <-------TEIL                          <------------------------ANAC81      ------------>CBF-------   --------->WRKY38(1)                 ---------->ID1    <----------DOF2  --------->DAG2    <-------- -------DOF5.7(2)                     <-----------GT1    <---------DAG2  ---------->DOF2   --------->YAB1 ----TEIL     <-----------GT1      <---------AHL20(2) <-----------GT1<---------ATHB12----------->GT1-   tcacgttcaccaagttttactatgtaaactgaaccatttttttcttttttctttttctacttttttttttaatcataaagcgcaatgttgtaagaataat  9717500                                                        <----------DOF2                                                      --------->LBD16                              <-                                            --------->LBD16                                       <-- --------YAB1                              --------->ANAC58    --------->ANAC58                  <--- ------ICU4                                --------->ANAC46    --------->ANAC58                  ---- ----->YAB1                                --------->ANAC58    --------->ANAC46                  <--- ---->ICU4                           <----------TaMYB80--------->ANAC46<---------ANAC58         ----- ->KAN4(1)                       --------->At5g28300  <------NtERF2    <---------ANAC46        <----- -->YAB1                        ----------->GT1     <---------DEAR3(1) <---------ANAC58    ------>ZmHOX2a(1) -KAN4(2)    ----------->GT1 --------->MYB52(1)   <---------SPL7<---------ATHB12         <---------ANAC46 -------->ATHB12         ---------->DOF2  <---------LBD16    --------->ZAT6       <-----------HVH21--   catgaatggaagacatggttacaatccaaaagaacggtgatatacccgcattcgtccgcgttaccactcaatggcatggtctcatgtcatttcctgtatt  9717600        <-----------HVH21 --------ICU4 -------YAB1                                           --------->YAB1--------->AHL20(2) ------AHL20(2)        <---------ARR11(3)   <---------YAB1           <---------AHL20(2) ----->AHL20(2)    <------MYB46(1)      --------->AHL20(2)          --------->AHL20(2) ------AHL20(1)    <------MYB83---------->ID1  ------->TEIL         --------->ICU4 ---->YAB1     <---------STY1(2)        <---------AHL20(2)     ----------->GT1       <----------DOF2 ----YAB1 --------->ZAT6<---------RVE1(1)<---------AHL20(2)--------->GLK1(2)  --------->ARR11(3) ------->YAB1  --------->STY1(2)    <---------AHL20(2)<---------ATHB12   --------->AHL20(2)       <--   ataatgacattgtcactagctaggtgatattttgttgtataattttatgaaactaaatcataatcttgtaataaataaaacatattgctatagcgatgtt  9717700                              --------->ZAT14                        <-----------TGA1                        <-----------HVH21                       --------->ANAC46               --------->At4g35610                       --------->bZIP60(1)            <---------At4g35610                      <---------TOE2(3) --------->ANAC55(1)                                <---------                     <---------DOF5.7(2)--------->ANAC55(2)                          ---------->DOF2 -------AtLEC2       <-----------GT1    <---------ANAC55(2)                  --------->MYB46(3)     <   gtatggaacatgttttttttgtttaacgtcactgtattcaacacttaataagagggagatgtctacttcaatgtattcaacaactagaaaagactttagt  9717800                       ------->TEIL               --------->TOE2(3)                      --------->AHL20(2)                            <              --------->ANAC46                 --------->ATHB12               <---------AHL20(2)   <-   --------->ATHB12>>>>>>>>>>ATML1        ---------->DOF2                   <----------DOF2        <-  <---------YAB1   >>>>>>>>>>PDF2        --------->AHL20(2)          <--------HAHB4          -------- -DOF2       <---------TOE2(3)           <---------AHL20(2)       --------->YAB1            <-------- ---------AtLEC2  ---------->DOF2  <---------MYB59 --------->ATHB12  --------->ATHB12  <---------MYB59   atgcatgattcaataaacgtaaatgcacatttttgtgcctaaattaaagtcattgattaaaaaaactagaatcatttgctttaattgtgcctaaatcatt  9717900                                                                          --------->ARR14(2)                                                                          <---------ARR14(2)                                                                          <---------GLK1(2)            --------->ATHB12                                      ------>ZmHOX2a(1)       <-------TEIL                                              --------------->AGL15    <---------ANAC46                                             --------->TOE2(3)    <---------ANAC58                                             <---------------AGL15    <---------ANAC58                                            <-----------------AGL3 <---------MYB52(1)                                             ----------------->AGL2              - ----------DOF2                                              <---------ANAC58         <---------At4g35610 --------ANAC58 --------->AHL20(2)      <---------YAB1 --------->ATHB12 --------->MYB59   <---------ANAC46 --------ANAC58 <---------AHL20(2)      <---------AHL20(2)   <---------ANAC58    --------->LBD16    < ->ATHB12 <---------WOX13(1)          <----------DOF2 <---------ATHB12  ----------->ARR10------>NtERF2 -ATHB12--------->ATHB12      ---------->DOF2    <---------MYB59----------------->AGL3--------->At4g35610   tgcgttacgttcattgatttaaaaaaactagaaaaagagactttaattgtgcctaaatcatttgcttcctaaattagatactcccgattgctgcctatat  9718000  Previous    Next  AGI:  At5g27530.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G35670.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABO81149.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 9717506    to: 9721100    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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