Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ANAC46                        --                                                           --------->ANAC58                        --                                 --------->YAB1  <---------AHL20(1)                        <---------AHL20(2)                                <---------ATHB12 --------->AHL20(1)             <---------MYB52(1) -- --------->CCA1(2)            --------->WOX13(1) <---------ARR11(3)    <---------ARR11(3) --------->AHL20(2) ---------ARR14(2)     ------->TEIL     --------->ANAC46   --------->ANAC58    --------->TOE2(3)<----   tagatttgagtctgcatttacaatgtatccctcaatcaaatcacagaacaatatataacacacacaattgctaaatcttatcgttattcaaattttataa  9704300                      <---------ZAT18                         <---------MYB52(1)      ----------->GT1 ------->GAMYB                         <---------ANAC58     <---------WOX13(1)                                     <---------ANAC58 ------->TOE2(3)     --------->ANAC58                      --------------->AtSPL3 ------->TOE1(2)     --------->ANAC46                 ------>ZmHOX2a(1) ------->TOE1(3)     --------->ANAC58          --------->ARR11(3)                                   - -------GT1--------->KAN4(2)                   <---------ARR11(3)                                   <   accttagattgaaaattccttcaacgcactaaatacaaaatgtctctaagctcttcctagttccgttctatcaccgattcaaaactaatacattcttacg  9704400                                               --------->HSFB2a(2)                                             <------ZmHOX2a(2)                                            <---------ARR11(3)                                            <---------AGP1                                            --------->ARR14(2)                                            --------->ARR14(3)                              <-----------HVH21<---------HSFB2a(2)                              --------->At5g28300         --------->SPL7                --------->TOE2(2)           <---------ARR14(3)                --------->TOE1(2)           --------->ARR11(3)                   ------>ZmHOX2a(2)               ----------->RAV1(2)          <---------ARR14(2)                  --------->CCA1(2)               <---------ANAC58   <---------bZIP60(2)   --------->TOE1(2)       <------ZmHOX2a(2)               <---------ANAC58----------->HVH21    --------->MYB46(3)         --------->ARR11(3)   --------->ANAC58         <---------DEAR3(1)------>ZmHOX2a(2)                <---------ARR14(2)   --------->ANAC46      ----------->HVH21  --------->GLK1(2)                  --------->AGP1   -----   --------->ANAC58   --------->ARR14(2)   <---------GLK1(2)                   <---------ARR11(3) --- -------->ARR14(2)    <---------ARR14(2)   <------ZmHOX2a(1)                   --------->ARR14(2) --- ---------ARR14(2)    --------->GLK1(2) <---------LBD16 --------->TOE2(2)      <---------AGP1<-------   agaatacgaaaatgtttacctgcgaatttgacggtgacatgtccaggatctggaacagcctacgatggataatggaaactagatctgatcagattgagat  9704500                                                                                                   <-                                                                                                  ---                                                                                          <----------                                                                                         <---------ANAC58                                                                                         <---------ANAC55(1)                                                                                         <---------ANAC46                                                                                         <---------ANAC58                                                                                        <---------LBD16                                                                                       --------->MYB52(1)                                                                                      ----------->HVH21        --------->ARR14(2)                                                            <---------SPL7        <---------ARR14(2)                                                          --------->At4g35610        --------->GLK1(2)                                                          <---------ARR11(3) --------->CCA1(2)                                                                 --------->ARR11(3) ---->CCA1(2)                                             --------->TOE1(2)    ---------->DOF2    <-- ------>ANAC58                                <------ZmHOX2a(1)            --------->MYB52(1)     --- ------>ANAC58                       ---------->DOF2      --------->TOE2(2)<---------DOF5.7(2)    --- --TOE2(3)                        <---------ZAT6<------ZmHOX2a(2)       --------->At4g35610   <------   aagaaacgagaatcgacaatgcaatccaatggacaagtgtaaagagaaggatcacagaaacatatgaacgaatcagataacgaaagagcttacgggtaca  9704600                                         --------->LBD16                                       --------->ANAC46    <---------GLK1(2)            <---------ANAC58  --------->LBD16                <---------ANAC58 <---------HSFB2a(2)            <---------At4g35610                              --------->At4g35610 --------->HSFB2a(2)            --------->At4g35610                              <---------ZAT2 -----ZmHOX2a(2)              <---------CCA1(2)                                  ----------->RAV1(2) ------>ARR14(2)            <---------REM1(1)                                    ====================RAV -----AtSPL8              <---------ANAC58                                       <---------At4g35610 -------ARR14(2)          <---------ANAC58     --------->YAB1           <----------DOF2     ------->GAMYB ------>ARR11(3)          <---------ANAC46 --------->SPL7           ---------->ID1       ----------->RAV1(1) ------>AGP1       ------>ZmHOX2a(2)   <---------LBD16          <----------DOF2  --------->ZAT2     - -TEIL  <----------DOF2  <-------TEIL<---------ALFIN1    <------------------------ANAC81 --------->MYB52(1)   gatccagaaactttctggtgatcgatgttcgtgtagcttccaccggacatcatcatcttcgttcttctttttctctttctcacagctgaaacaacagaaa  9704700                                       <---------AHL20(2)                 <---------YAB1                              --------->YAB1--------->AHL20(2)           --------->ARR11(3)                         ------------>CBF <-----------TBP                <---------ARR11(3)     <----           <----------DOF2   <---------ATHB12              <---------AHL20(2)                   <xxxx -------->ZAT6        *TSS --------->WOX13(1)              --------->AHL20(2)     <----------DOF2   taacacaaaccctctttctcgtttagtagcaatcaaaccattttttttatatacagggtttttaattaggggaaatatcattttcttttttttttgtcat  9704800                                                                                         <xxxxxxxxxxx                                                                                        --------->ARR14(2)                                                                                    -----------------                                                                                    <------NtERF2                                                                                    >>>>>>>>>E2Fc                 --------->ANAC58                                                   >>>>>>>>>E2Fd         <---------AHL20(2)                                                       --------->ANAC46        --------->AHL20(2)                                                        --------->ANAC58        <---------AHL20(2)                                                        --------->ANAC58      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <---------LBD16    <---------AHL20(2)                                                          <---------ANAC58    --------->AHL20(2)                                                      <---------DAG2    <---------YAB1                                                    <---------ZAT18   <---------ARR14(2)   <---------AHL20(2)                                                 --------->ZAT14   --------->GLK1(2)   --------->AHL20(2)      <-----------ARR10                       <---------ANAC46------>NtERF2 -----At4g35610  --------->ANAC58    <-----------RAV1(1)         <---------ZAT14<---------ANAC58 xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ATHB12      --------->CCA1(2)    <----------DOF2 ---------   ccgattttaattaaatctcaagcgagtcaaatctaatcaatgttgtttacataagtgatatgaagcgttcagtgcaaacttttcgcgccaaatctggaga  9704900                                                                              <---------AHL20(2)           --------->YAB1                                                     --------->AHL20(2)           <---------ICU4                                              ----------->GT1      <---------AHL20(2)                                           <---------ARR11(1)  --------->AHL20(2)                                               --------->GLK1(2) <---------AHL20(2)                                                ------->TEIL              <------- <---------YAB1    <-----------GT1                                 --------->ARR14(2)      <---------AHL20(2) xxxxxsmallRNA(i)<----------DOF2               <---------MYB46(3)  <---------ARR14(2)     --------->AHL20(2) >AGL1--------->AHL20(2)                       ----------->GT1    <---------CCA1(2)       <---------AHL20(2) -->GT1   <---------ATHB12                 <---------AtMYB61      <---------ARR14(1)--------->TOE2(3)   aatattatttaaatcatgactttacaatttttgttatttgttattttggtggtttaaaacataaactcgaatcttgttatttaaattcttaattttatat  9705000               --------->ANAC58                                        <-----------HVH21           xx               --------->ANAC58                            --------->TOE2(3)                   <xxxxx        --------->AHL20(2)                                <---------ANAC55(2)             --------->DEAR3(1)        <---------AHL20(2)                                --------->ANAC55(2)            <---------At4g35610    <---------AHL20(2)                   <----------ID1   --------->ANAC46               --------->At4g35610   <---------YAB1 ------->TEIL       ------>MYB46(1)      --------->ANAC58            <xxxxxxxxxxxxxx --AHL20(2)  --------->YAB1          ------>MYB83         --------->ANAC58           <-----------HVH21   tgatttttattttaatcacgaatttttgttgataaaaccaaataagacaaattgttaactacgtaaacagagatgtcatcgacgaagtgtcatcgccctt  9705100            --------->TOE2(3)           <---------ANAC55(2)                         <---------ANAC58           --------->ANAC58                            <---------ANAC46           --------->ANAC46                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           --------->ANAC55(2)                ---------->ID1           --------->ANAC58                  xxxxxxxxxxxxxxxx>smallRNA(s)          <---------TOE1(2)                  <-----------HVH21         ------>ZmHOX2a(1)                  <-----------RAV1(1)      xxxxxxxxxxxxxxx>smallRNA(le3)        ------>ZmHOX2a(2)     --------->ZAT18                      <---------At4g35610     <---------ZAT18                     <---------ARR11(3)    <---------ANAC58                     <---------AGP1<---------ANAC58    <---------ANAC58              ------->GAMYB   <----------DOF2                                 <-- xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(s)      ---------->DOF2      <----- xxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)          --------->At4g35610   -------- xxsmallRNA(i)                xxxxxxxxxxxxxxxx>smallRNA(i)     <-----------GT1       <---------At4g35610   cttctagcgtcctacgtaaaccagtaaggcttctaacgctcttgatctgtcgcatttgggtgttttaacaattagctaaagcccttctgctcttgcaaca  9705200  Previous    Next  AGI:  At5g27490.1    Description:  integral membrane Yip1 family protein. similar to integral membrane Yip1 family protein [Arabidopsis thaliana] (TAIR:AT3G05280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17630.1); contains InterPro domain Yip1 domain (InterPro:IPR006977) Range:  from: 9702838    to: 9704722    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version