Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------ANAC46                          <---------AHL20(2)                          --------->AHL20(2)                          <---------ICU4                         --------->ICU4                    --------->ANAC58                    --------->ANAC58             <---------AHL20(2)   <---------ANAC58      ----------->GT1 --------->AHL20(2)        <---------YAB1                              --------- --------->AHL20(2) --------->ANAC46          <---------CCA1(2)                             <-------- ------->TOE2(3)    --------->ANAC55(2)     --------->ANAC55(2)                           <---------TOE2(3) ------>YAB1 --------->AHL20(2)   <---------ANAC58--------->TOE2(3)         ------>ZmHOX2a(1) -->GT1      <---------ICU4  <-----------GT1<---------ANAC55(2)    <-------TEIL<---------CCA1(2)   acataaatttgttaattttttcaagtaattttttcttcgtgtgatcacatatcattaacatgttccaaattcatggtcctcttatcttgaataagatttt  9683700                                                                          <---------AHL20(2)                                                               --------->LBD16--------->YAB1                                                               ----------->GT1--------->AHL20(2)                                                              --------->ATERF1(2)          --------->CCA1(2)                            <---------TOE2(3)                 <---------DEAR3(1)<---------YAB1      ----------->GT1   --------->TOE2(3)                     <---------ATERF1(2)         --------->ARR11(3) >ARR11(3)              --------->TOE1(3) --------->MYB52(1)  <---------DREB2C(2)   ---------->DOF2 < -ARR11(3)     --------->At4g35610    --------->YAB1   ------->TEIL    ----------->GT1    <---------ARR11(3)   agtatgtattgtaaactagctcaaaacattaacatttctgtaataaacgaatgaatgaaacttgccggtgaaatagtaaattataaaaaagagatatgaa  9683800                           <----------DOF2                       --------->ARR11(3)                       <---------GLK1(2)                       <---------ARR11(3)                                                      ------                   ---------->DOF2                                --------->MYB46(3)          <------ -----------GT1   --------->AHL20(2)  <-------TEIL     <------ZmHOX2a(1) --------------------->WRI1   aatgaccattttagatgaaataaaagatacttttcatacatacatatacagagtttaggaccatttcaacaacttcttcgaagtcatcgaactattttga  9683900                                                <-------PIF5                                                ------->PIF5                                                <-------MYC4                                                <-------MYC3                                                ------->MYC3                                                ------->MYC4                                                <-------MYC2                                                ------->MYC2                                               <---------PIF3(3)                                               --------->TGA1a                                               --------->PIF3(3)                                               --------->O2                                               <---------TGA1a                                               >>>>>>>>>>HY5                                               --------->ANAC46                                     ----------->HVH21                                --------->HSFB2a(1)                                <---------HSFC1(2)                     --------------->AGL15     <---------O2                         --------->ARR14(2)                     <---------------AGL15   <---------ALFIN1             <---------ANAC46       ==================================================bZIP_DOF         <---------ANAC58       <----------DOF2          --------->HSFC1(2)           <---------ANAC55(2)    <---------ARR14(2) <---------AtLEC2   <-----------------AGL1  <---------WRKY12 --------->ANAC55(2)   --------->GLK1(1) --->ATHB12         <-----------------AGL3 <----------------PIF3(2)       <---------ANAC58        --- ---YAB1   <-----------GT1      <---------HSFB2a(1)        <---------ATHB12        <---------GLK1(1)   tttgtatgacttttcacttccatctccaattggaaacttctgaccgtccacgtggcattcaataagtaacacatttgcttatgacatatcccctaacttc  9684000                                                                  ------------>CBF                                                                ------>ZmHOX2a(1)                                                         ------>ZmHOX2a(1)                                                         <---------YAB1                                                        --------->TOE2(3)                                                       ------>ZmHOX2a(2)                                                       ================HOX2a_HOX2a                                                      <------ZmHOX2a(2)                                                      =================HOX2a_HOX2a                                                     <---------ARR11(3)                <----------DOF2                      --------->ARR11(3)            --------->ANAC46                         <---------GLK1(2)            --------->ANAC58                         --------->AGP1            --------->ANAC58          ------>MYB83   <---------ARR14(2)                        <-----           XXXXXXXXXXXXXXXXXXXX>MIR396B             <---------At4g35610    *TSS                <----- --->ZmHOX2a(1) <---------DAG2        ------>MYB46(1)--------->ARR14(2)--------->YAB1     <---------MYB52(2)   ctcgcttcttctccacgactttttcaaacttttcaaaacctccctataaacttcagatccttattcctcacaatattaaaccaaaaaaaaaaactaactt  9684100                                                                                            ---------                                                                                         -------->P                                                                                       <---------WRKY38(1)                                                                                       <---------WRKY45                                                                                       <---------WRKY12                                                                                     <-----------HVH21                                                                                    <------NtERF2                                                                                   <---------MYB46(3)                                                                                  <---------DEAR3(1)                                                                                  <---------ANAC46                                                                                 --------->ATERF1(1)                                                                                 <---------LBD16                                                                                 <------NtERF2                                                                                <---------ERF1                                                                                <---------DEAR3(2)                                                                                <---------RAP2.3(1)                                                                               <---------RAP2.6(2)                                                                               <---------RRTF1(2)                                                                               <---------RAP2.3(2)                                                                               <---------DEAR4(1)                                                                               <---------At1g77200                                                                               <---------DEAR3(1)                        ------>ZmHOX2a(2)                                      --------->ETT(1)                      --------->ARR14(2)                                       <---------RRTF1(3)                      <---------ARR14(2)                                       <---------DREB2C(2)                      ------->TEIL                                             <---------RAP2.3(3)  -                 <---------ICU4                                                <---------ANAC46     -                 --------->YAB1                                               --------->DDF1---------                 -------->HAHB4                                               --------->RAP2.6(3)  <-                --------->ICU4                                               --------->REM1(2)  <----                <---------ATHB12                                             <-----------HVH21 ------                <---------ATHB51                        <---------ANAC58    ----------->HVH21  <-----              --------->YAB1                       <---------ANAC58        --------->LBD16  ---------        --------->LBD16<------ZmHOX2a(2)           <---------ANAC58       <---------ANAC58  ---------       <---------HSFB2a(2)                       --------->ARR14(2)       <---------ANAC58 <---------LBD16       --------->HSFB2a(2)   ---------->DOF2     <---------ARR14(2)    <-----------GT1--------->WRKY18(1) -----DOF2  ----------------->AGL3         <-----------GT1           <---------YAB1------>NtERF2----- ----DAG2   <-----------------AGL3       <----------DOF2<---------ANAC58  --------->ANAC55(2)--------   tttgggactccagaactaataatggatcccataaaacacatctctttaccagttcttgtcttgtttctactattatccgtgtcggcgggtcaacccggaa  9684200 --------->LBD16 ----------->HVH21 >ANAC55(1) -------->TOE1(1) -------->LBD16 >ANAC58 --------LBD16 -----GLK1(1) --->ARR14(2) ----ARR14(2)                    <------NtERF2          <-------GAMYB           <---------ZAT2 >ANAC46                      <---------At4g35610      <---------MYB46(3)       <---------At4g35610 >ANAC58                   ---------->DOF2    --------->ANAC58         <-----------HVH21 ---->GLK1(1)     <---------ANAC55(2)         --------->ANAC58<-------GAMYB     --------->ZAT2 ->LBD16     ----------->HVH21--------->At4g35610      <-----------RAV1(1)      --------->At4g35610   ccccggaccagagacatgacccgtatgcttacagcggcagtctaagtccagccatggctgttgtcgttgtagttgtcatcgcagctctcttcttcatggg  9684300                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  <--                               --------->ZAT18                                                    <--                 <-----------HVH21                                                                ---                 <-----------TGA1                                                                <---                --------->ANAC58                                                                 <---                --------->ANAC55(2)                                                            <-----                --------->ANAC46             <---------ANAC58                          --------->MYB52(1)                --------->ANAC58<------NtERF2----------->GT1         <------ZmHOX2a(1) ------------>AtMYB77                <---------ANAC55(2) --------->ZAT14             --------->ZAT2      --------->ANAC58                --------->ANAC55(1) <---------ZAT14         --------->ALFIN1        --------->ANAC46               <-------TEIL    <---------ZAT18          <-----------RAV1(2)         --------->ANAC58              <-----------GT1 <---------ANAC46        ------>ZmHOX2a(1)            ------->TEIL<-----      --------->DEAR3(1)   <-----------RAV1(1)      ----------->RAV1(2) <------ZmHOX2a(1) <---------MYB46(3)    <---------At5g28300--------->ZAT14       <---------ZAT6<------ZmHOX2a(1)     <---------SPL7<-----   <-----------GT1     <---------ZAT14       <---------ANAC58 <------ZmHOX2a(1) <---------MYB52(2)---   cttcttcaccgtctatatacgtcactgtactggcgcagtagacggtagcgttactcctgcaggaggagctaggaggagagtgacgaacgcaacggttgcg  9684400         <---------LBD16  <-------GAMYB  <---------ANAC46 ------->ALFIN1 -----MYC2 ---->MYC3 -----MYC3 -----PIF5                  --------->ARR14(2) ---->PIF5                  <---------ARR14(2) ------ANAC58              --------->DOF5.7(2)                                  <-------GAMYB ------ANAC58      <------ZmHOX2a(2)                                     --------->DAG2 --------->ZAT18 ----ANAC58  --------->ARR14(2)                                         ---------->DOF2--------->ALFIN1 ----ANAC46  <---------ARR14(2)    <----------DOF2                   <------MYB83    <---------ANAC46 ----ANAC58 <------NtERF2 <---------HSFC1(2)                         <------MYB46(1) <---------ANAC58 ---->MYC2 --------->LBD16--------->HSFC1(2)                     --------->ATHB12    <---------ANAC58   cgtgggttagacgcggagacgatcgagacgtttccgacttttgtttactcagaagtgaagacacagaagattggtaaaggagcgttggagtgtgcgattt  9684500                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                              <------                                                                                    =================                                                                                    <----------DOF2<-                                                                                   <---------ANAC58<-                                                                               ------->MYC3   -------                                                                               ------->MYC2   <------                                                                               <-------MYC3   -------                                                     ------->MYC2              <-------MYC2   <------                                                     <-------MYC3              <-------PIF5   -------                                                    ===========================================bZIP_DOF                                                    <---------ANAC58           ------->PIF5   -------                                      <---------ANAC46                        <---------ANAC58<------                                      ----------------->AGL1   --------->TOE2(3)   <---------ANAC58<-                                  --------->At4g35610<-------MYC2             =================bZIP_DOF                                  <-------GAMYB     --------->ANAC55(2)       <---------ANAC46<------                                  ============================MYC_MYB         <---------ANAC58-------                                  <---------At4g35610------->MYC3             --------->ALFIN1-------                                 <-----------RAV1(1)<---------ANAC58          <------NtERF2   <------                                 <---------MYB46(3) --------->TGA1a          ------>NtERF2    -------                                 --------->MYB52(2) <---------O2<---------YAB1<---------TGA1a -------                                 <---------DEAR3(2) --------->O2------>ZmHOX2a(1)  <---------ANAC46<-                             <---------ANAC58       <---------TGA1a         <---------ANAC46  <------                             <---------ANAC46       <---------ANAC55(2)  <---------DEAR3(1) <--------                             <---------ANAC58       <---------ANAC46   --------->ARR14(2)   ---------                            ------>NtERF2           <---------ANAC55(1)<---------ARR14(2) <----------   gtttgaatgagtttgaagacgatgaaacgctgcgtctgttgcctaaatgtgatcacgtgtttcatcctcattgtatcggcgcgtggcttcaaggtcacgt  9684600  Previous    Next  AGI:  At5g27420.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL5H precursor (ATL5H) [Arabidopsis Thaliana] (GB:Q8LGA5); similar to ATL6 (Arabidopsis T?xicos en Levadura 6), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G05200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22358.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 9684075    to: 9685564    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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