Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->ANAC46                                    --------->SPL7     --------->ANAC58                                   <---------MYB52(1)           ----------->GT1     --------->ANAC58                                --------->MYB46(3) <---------ARR14(2)          - --------ARR14(2)                         ----------->HVH21  <-----------ARR10 --------->LBD16      - ----At4g35610               --------->ARR14(2)<---------At4g35610      --------->ARR14(2)      ----- --->At4g35610         <-----------GT1   <---------TOE1(2)<---------DEAR3(1)------>ZmHOX2a(1)   <---- --->LBD16          <----------DOF2      --------->SPL7<---------SPL7   <---------ARR11(3)   <------- >HVH21      <----------DOF2 <---------ARR14(2)--------->At4g35610     <---------CCA1(2)  --------->ICU4   agaacttacgcctcgctttgagcttttaccatatatgcattcgtatgaccgctcaaccgttcggctcttctccatatcctccagataatgtaattctttc  9678300                                                                                    --------->MYB59                                                                                <------MYB46(1)                                                                                <------MYB83                                                                                <---------MYB46(3)                                                                               <---------MYB46(3)                                                                               <---------AtMYB61                                                                              <--------P                                                                             <---------ANAC58       <                                                                             <---------ANAC58       -                                                                             <-------GAMYB       <---                                                                            <------MYB46(1)      <---                                                                            <------MYB83         <---                                                                            --------->ATHB12    -----                                                                            --------->MYB55(2)  -----                                                                            --------->MYB52(2)  <----                                             <---------MYB52(1)             <---------MYB46(3)  -----                                            <-------GAMYB                  <---------AtMYB61    -----                                           ----------->GT1               <-------GAMYB          <----                                        <---------WRKY18(1)             --------->MYB111(2) <--------                                      ------>ZmHOX2a(1)                 --------->MYB55(2)  --------- -------->ANAC58                      --------->HSFB2a(2)               --------->MYB111(1)<---------TOE2(2) -------->ANAC58                      --------->LBD16                   <---------MYB46(3) <---------TOE1(2) ---->HSFB2a(2)             --------->AHL20(2)                         <--------P<-----------HVH21 <- -----HSFB2a(2)   <---------YAB1     <---------LBD16                  <-------GAMYB<-----------RAV1(2) ---DOF2      <----------DOF2       ----------->RAV1(2)              <---------MYB46(3)    <---------TOE1(3)   agaagcaatttagtttctttacaattgaaatcaaatattcctggaccgttatttcgaaacatattccaagatggttgttggttggtcaggtcgaaggttt  9678400 <-------GAMYB ---------MYB46(3) -------->MYB55(2) ---MYB46(1) ------ANAC46 ---MYB83 <---------LBD16 ---->MYB111(1)                                                                                     < ---->MYB111(2)                                ------->TEIL                                  <------- -----AtMYB61<-------GAMYB              <---------GLK1(1)                                    -------- ---->MYB55(2)                          --------->GLK1(1)         ----------->GT1          --------->WOX13(1) ---->MYB46(2)                         <---------ARR14(2)       <---------TOE1(3)       --------->ANAC58 -----MYB46(3)<---------MYB52(1)       --------->ARR14(2)       <---------TOE2(3)       --------->ANAC46 -HSFB2a(1)  --------->At5g28300     --------->LBD16   ------>ZmHOX2a(2)                --------->ANAC58 >HSFB2a(1)<---------ANAC46         <---------ANAC46 --------->ARR11(3)          ------->GAMYB------- --------AtMYB61                   <---------LBD16   <---------ARR11(3)         --------->MYB46(3)<--   ggtggttgaaatcgcggttattagcatttcatgtgtttgcggaaatgtgtatgttgatcttagattaagggttatatatacaaccgctaaacgcaatcac  9678500          --------->ATHB12          <---------ICU4                                   <---------ATHB51          --------->AHL20(2)                   <---------HSFB2a(2)          <--------HAHB4                       --------->HSFB2a(2)          --------->ATHB51                    <---------LBD16         <---------ATHB12                   ------>ZmHOX2a(2)         <---------ATHB51                  --------->GLK1(1)  <-------GAMYB  <----------DOF2           <---------GLK1(1) --------->MYB111(1)                      --------->ARR11(3)           --------->ZAT6 --------->MYB52(2)                       --------->GLK1(2)--------->ICU4 <---------MYB46(3)                       --------->ARR14(2)          <---------YAB1 --------->MYB111(2) <---------TOE2(3)    <---------AGP1   --------->AHL20(2)                      -- --------->MYB55(2)  <---------TOE1(3)    <---------ARR11(3)        <---------ICU4            <------ --------P<---------AHL20(2)              <---------ARR14(3)   <-----------GT1           --------->ALFIN1 --ATHB12--------->ICU4                   <-----------ARR10<---------AHL20(2)          <-----------RAV1(1) ->MYB46(3)   <---------AHL20(2)          <---------ARR14(2)<---------ICU4             ============== -->ATHB12-------->ATHB1  ----------->HVH21<------ZmHOX2a(2)--------->YAB1      ------>MYB46(1)<----- -------MYB46(3) <---------WOX13(1)      <------ZmHOX2a(1) <---------ATHB12     ------>MYB83<--------   tggttgttgcaattatttgatttatggtttgacagaaattggaggatctctgggagtgcaaataattacattatcactcaccaacttcgatgtggcagga  9678600                                                                                           --------->AHL20(2)                                                                                       --------->AHL20(2)                                                                                 ----------->GT1                                                                              --------->DAG2           <---------ANAC58                            --------->HSFB2a(2)   ---------->DOF2---------        --------->ARR11(3)                             <---------HSFB2a(2)----------------->AG      ----------->ARR10                     ------------>CBF              <---------------AGL15    --------->CCA1(2)                       <---------ATHB12              --------------->AGL15 ------->CCA1(2)                          --------->WOX13(1)              ----------------->AGL1 ---At4g35610     <---------YAB1        ------------>CBF                 ----------------->AG ===RAV <---------ARR11(3)     --------->YAB1       <----------DOF2      <-----------------AGL1 -ZmHOX2a(1)      --------->ICU4       --------->TOE2(3)             <---------ICU4    <---------AHL20(2) ---RAV1(2)<---------ANAC58   <---------ATHB12   <---------ARR11(3)  *TSS----------------->AGL1   gataagataagatacttgtgaagattaaactaatcaaaaaacatcaatcaatttcttttggaaacttgtaatctttcccaaaagtgtaaaaaaataaaaa  9678700                                                                          <--------ATHB1                                                                         --------->ICU4                                                                         <---------ATHB51                                                                         <---------ATHB12    <----------DOF2                     <---------ANAC58    --------->ANAC46   ------>ZmHOX2a(2)                    <---------ANAC58    --------->ANAC58 <---------ARR11(3)       <---------GLK1(2)                 --------->ANAC58                      --- --------->ARR11(3)       <---------ARR11(3)     ---------->DOF2   <---------TOE2(3)            <---- >YAB1      <-----------GT1      ----------->RAV1(2)       <---------LBD16--------->YAB1     <-------   tttgatctttttttttacataagtccaagattatcgtctggttcttgtttataaagagaaacacggactaaggcaataatagttttgttgaagttgagat  9678800                                                            --------->At4g35610                                            --------->At4g35610                                  --------->ANAC58          <---------At4g35610            ------>ZmHOX2a(2)     --------->ANAC55(1)     ---------->CDC5          <---------ARR14(2)      --------->ANAC58   <------ZmHOX2a(2)    ---------->DOF2      <---------At4g35610<---------At4g35610 ------>ATHB12    <---------AHL20(2)       <---------ATERF1(1)  <---------ALFIN1      <-----------RAV1(2) -----WOX13(1)  <----------DOF2   --------->ANAC46  --------->ARR11(3)          <----------DOF2<----- --TOE2(3)--------->ARR14(2)  --------->CCA1(2)     <---------ARR11(3)     ------->TEIL<---------TOE1(2)   tgatttcaaagggatcgtctttaatggaggtgatacacgcatggtctgctccaagatcactcagcaccactctcatgtactcctttgcccaggtactctt  9678900                             <---------HSFB2a(2)                             ------>ZmHOX2a(1)                                        ------>ZmHOX2a(2)                             --------->LBD16                                        --------->ARR11(3)                             --------------->AGL15                          --------->ATHB12                     <---------ARR11(3)     --------->GLK1(1)               <---------AHL20(2)                    <---------RVE1(1)      <---------ARR14(2)              --------->AHL20(1)          --------->TOE2(3)  --------->HSFB2a(2)   <---------TOE1(2)       <---------AHL20(1)       <-----------GT1       <---------------AGL15<-----------RAV1(2)      <---------AHL20(2)     <---------ANAC58--------->ARR11(3)    --------->ARR14(2)              --------->AHL20(2)     <---------ANAC58<---------GLK1(2)   ----------->ARR10       --------->YAB1     <---------ARR11(3) -----DOF2<---------MYB59   <---------LBD16<---------GLK1(2)    <---------YAB1  --------->YAB1<------   tttgttttcttaccttactcagagatttttcctggaaatggaacagatttgcccaggtactgttttatcatagaaaatttattgatgatctaaattttgt  9679000                  ----------->RAV1(2)                             ----------->GT1                <---------DAG2                                  ---------->DOF2     <---------WOX13(1)--------->ZAT14                      ---------->DOF2<------ZmHOX2a(1)   --------->ATHB12    <---------ZAT14                     =========================HOX2a_HOX2a <---------WOX13(1)    --------->At4g35610                 <------ZmHOX2a(1) <------ZmHOX2a(2) ---YAB1     <---------ALFIN1          <---------ZAT14  <---------LBD16---------->DOF2       --------   ttgagtgattgaatcccaccttctgagcagtagagaaatagttctctgtgtattgataccaggaaagaaagaaaaaaggatcaaaatttttggttttaaa  9679100                                                --------->LBD16                                            --------->ARR14(2)                                      <                                            <---------ARR14(2)                                      <                                   --------->YAB1             <-----------GT1                  <-----  <---------YAB1                  <---------ATHB12   ---------->DOF2                           <----- ->AHL20(2)                   ------>ZmHOX2a(1)<---------ANAC46  --------------->AGL15         <-----   tattcttcttggcttcaaaacatctatgtgtcctcaatgataaacagttccgaataaaagttttttacatttttgagttattgtgaaactatgtatggtg  9679200  Previous    Next  AGI:  At5g27400.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO17659.1); contains domain SSF53335 (SSF53335); contains domain PTHR23109 (PTHR23109) Range:  from: 9676337    to: 9678506    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g27410.1    Description:  aminotransferase class IV family protein. Identical to Branched-chain-amino-acid aminotransferase-like protein 2 [Arabidopsis Thaliana] (GB:Q9ASR4); similar to aminotransferase class IV family protein [Arabidopsis thaliana] (TAIR:AT3G05190.1); similar to hypothetical protein OsJ_010473 [Oryza sativa (japonica cultivar-group)] (GB:EAZ26990.1); similar to branched-chain amino acid aminotransferase-like protein [Cicer arietinum] (GB:CAD70620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17658.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544) Range:  from: 9678669    to: 9682943    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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