Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   >>>>>>>>>E2Fc                                  <--              <---------ANAC58                    ------>NtERF2                             ---------      <---------YAB1                              --------->LBD16                       --------->LBD16    --------->YAB1                               --------->ANAC58                      --------->ANAC55(2)    <---------ICU4                               --------->ANAC46                      <---------ANAC55(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          --------->ANAC58                      <---------ANAC46  --------->ARR11(3)                             <<<<<<<<<<E2Fa                       <---------LBD16 ---------AHL20(2)       --------->AtMYB61   <-----------GT1                         <xxxxxxxxxxxxxxx ------->AHL20(2)     --------->ANAC46 --------->YAB1        --------->AHL20(2)--------->YAB1    xxxx ---->YAB1    <---------ANAC58  --------->At5g28300>>>>>>>>>E2Fd              ----------->GT1  <----- >RAV1(1)     <---------ANAC46 ----------->GT1  <---------LBD16   <-----------GT1  <xxxxxxxxxxxxxxxxsmallRNA(s)   ataaaatcatgatactgcgttttcccaccaaaacagtaaaatcatattttcccgccaaaactataaattcacgatttagaatgaaaattgcggaattatg  9583700                                 <---------------AGL15                     <---------AHL20(1)                     <---------AHL20(2)                     --------->AHL20(1)                                             <---------HSFB2a(2)                    --------->YAB1                                                  --------->HSFB2a(2)                    --------->AHL20(2)                                       <---------ANAC58                    <---------AHL20(2)  ----------->GT1                      <---------ANAC46 --------DOF2--------->At5g28300 --------------->AGL15                       <---------ANAC55(1) >ICU4      ----------->GT1     ----------------->AGL2                       <---------ANAC55(2)    - xxxxxxxxsmallRNA(fl3)        --------->ANAC46           <---------At4g35610 <---------ANAC58    <xxx xxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AtMYB61       --------->At4g35610 --------->ANAC55(2)xxxxx ----YAB1<---------ALFIN1 <-----------GT1       --------->YAB1             <-----------GT1    -------   ctttctcgctaacaccgtaaaattatattttcccaccaaaactagaaaaatcacaatgtagcagaaaaattgtggaattacgttttccagcaaaaaccgt  9583800                                                                                                  ---                                       --------->AHL20(2)                                         ---                             <---------YAB1                          ---------->DOF2       --------->ATHB12                           <-----------GT1                <---------DAG2        --------->At4g35610 -      <-----------GT1      --------->YAB1  --------->AHL20(2)   <---------------AGL15     <------ZmHOX2a(2) -------->YAB1         <---------AHL20(2)  <---------AHL20(2)   --------------->AGL15  <xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->AHL20(2)    <---------ANAC58    <------ZmHOX2a(2)    <-- xxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(2)     <---------ANAC58   --------->ARR11(3)    <-- -->TOE2(3)           --------->AHL20(2)--------->AHL20(2)<----------DOF2   <---------ARR11(3)   <---   aatcatattttccctccaaaactattaaatcacgatttaaaataaaaaattatcgaattgctttttccatctaaagtagatcatctaaatggatcatttg  9583900                                                                  <---------ICU4                                                                  --------->YAB1                                                                 <---------YAB1                                                                 --------->ICU4      <-------TEIL                                               <---------ATHB12 ------>ARR14(2)                                               --------->YAB1 ------>ARR11(3)                                              <---------AHL20(2) ----->ZmHOX2a(2)                                            --------->AHL20(2)              <------- xxxsmallRNA(i)                                              --------->AHL20(1)              -------- -------AGP1                                                 <---------AHL20(1)          <----------CDC5 -------ARR14(2)                                            --------->YAB1           <---------ALFIN1 ------CCA1(2)                    <-----------HVH21  <----------DOF2            <-----------GT1  ----   gatctcgatgcattatacagatgtacaaatgaacagggtcatatactaaaaaacactttcaaatataatcattccttcttaatttcccctcgctgagcac  9584000                                                          <---------AHL20(2)                                                      ----------->TBP                                                    <---------AHL20(2)                            <---------AHL20(2)      --------->YAB1                            <---------YAB1      --------->AHL20(2)     <---------AHL20(2)                  --------->ARR11(3)            <---------AHL20(2)    --------->AHL20(1)                  <---------ARR11(3)            <---------YAB1  ----------->GT1     <---------ARR14(2)  <---------AHL20(1)    <---------AHL20(2)     <---------AHL20(1)     --------->ARR14(2)  --------->AHL20(1)    --------->AHL20(2)     <---------AHL20(2)       *TSS --ZAT14        <---------AHL20(2)      <-----------GT1   ----------->TBP<------------CBF    -------- ->ZAT14<-----------GT1 <---------CCA1(2)     --------->YAB1 ---------->DOF2      ---------->DOF2 ----->ICU4    --------->AHL20(2)  ------>ZmHOX2a(1)--------->AHL20(2)--------->AHL20(2)  <----------   tgatgagtattttccgattaaatcttatatattattcctattttgctattttaattatatataaaaaggaaataaaattgatataaaagaaattacccta  9584100                                    --------->ZAT14                                    <---------ZAT14                            ------>NtERF2--------->ZAT14                          --------->ATERF1(1)                         <---------DEAR4(2)                         <---------RAP2.3(1)                         ------>NtERF2   <---------ZAT14                         <---------ATERF1(1)                        <---------DEAR3(1)                               <---------At4g35610                        --------->DEAR3(1)                            --------->At4g35610             --------->YAB1--------->DEAR3(1)       <---------------------WRI1         <---------YAB1--------->RAP2.3(1)        --------->DAG2      <---------At4g35610       <---------ICU4  --------->ATERF1(1)       ---------->DOF2     --------->MYB52(2)            <- ->TOE2(3) <-----------GT1<------NtERF2  <---------WRKY38(1)        --------->ZAT18          <------- -GT1 --------->ICU4<-----------RAV1(2)  <---------ZAT18       ---------->DOF2           --------->GLK1(2)   attctctaaatattatcaacattcaggcgccgagagagaacagtgaacgcagaaagtgaagaattcaaagttcgctgcttctgtttaagagaattttgat  9584200                                       --------->DOF5.7(2)                                     <---------ZAT6                                 <---------AHL20(2)                            <---------TOE1(3)                                    <---------ANAC58                            <---------TOE2(3)                    --------->MYB52(1)                       <---------AHL20(2)                        <---------DOF5.7(2)                      <---------AHL20(2)           <----------DOF2               <---------ANAC58  --                      --------->AHL20(1)          <---------ANAC58        <---------ANAC58   --------                      <---------AHL20(1)          <---------ANAC46        <---------ANAC58   -------- --------YAB1         --------->AHL20(2) <---------DOF5.7(2)  ----------->GT1  --------->ARR11(3)  -- --YAB1        ----------->GT1  <----------DOF2   <---------ANAC58        <---------ANAC46   --------   tttgatttttgtttttgtggtgaatttattagggttttattgttaacgagtagcttgatggagaaggtaacgagtggcttagagcttgttgatataagca  9584300        <---------HSFB2a(2)        --------->HSFB2a(2)        --------->ANAC46       <---------LBD16   --------->HSFC1(2)  --------->ARR14(2)  <---------ARR14(2) ------->YAB1 ->ANAC46             --------->GLK1(2) ->ANAC58             <-----------ARR10                                             --------->YAB1 --------->GT1       <---------GLK1(2)                    <-----------GT1     <------ZmHOX2a(2) ->ANAC58--------->LBD16                  --------->KAN4(2)            ---------->DOF2             --   agcgtaacttccgcaaaaccctagaatctctccaagaaggtgctcattcgcttcttctacttacaattcaatggaaagagatcgaatcgtatttcgattc  9584400           <---------HSFB2a(2)           ------>ZmHOX2a(1)                                 ---------->DOF2     <---------HSFC1(2)                                 <---------TOE2(3)     <---------HSFB2a(1)                                <---------TOE1(3)     --------->HSFB2a(1)                              ---------->DOF2                          <-----     --------->HSFC1(2)                        <---------ARR14(2)                          <------ZmHOX2a(1) ------->ANAC46 <------ZmHOX2a(1)             <------ZmHOX2a(1)   <----------DOF2 ---------->DOF2   cacgagaagcgtcctcgaggaacgagccaaggagctagaagcgttggaggaatcgataaaggttaaagctttggaattggagaagaaagagaaggagctt  9584500                                                            --------->ATHB12                  -------                                                       --------->ARR11(3)                   <------ZmHOX2a(1)    <---------WOX13(1)                                <------ZmHOX2a(1)         <---------MYB46(3)  --------->ATHB12                              <------ZmHOX2a(1)              <---------AtMYB61 -----DOF2        ---------->DOF2      <---------HSFB2a(2) <---------YAB1     <------NtERF2<---------   tgtttgattgatgagtcgatgaaagcgaaacagagcgagtttgagaagaaggagaaggattttgatttggaacagaaggcagaggttgagaagaggaaaa  9584600  Previous    Next  AGI:  At5g27230.1    Description:  similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G22440.1); similar to unknown [Picea sitchensis] (GB:ABK24390.1); contains InterPro domain Frigida-like (InterPro:IPR012474) Range:  from: 9584095    to: 9588052    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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