Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->TOE1(2)                                           <---------ANAC46                             <---------HSFB2a(1)                                     <---------DAG2                                     <---------ZAT2                                     <----------DOF2                                    --------->At4g35610                                  <-----------GT1                    --------->At4g35610<---------At4g35610                               --------->ARR14(2)                    <---------At4g35610<---------HSFC1(2)                            ------>ZmHOX2a(2)                 <----------DOF2           --------->HSFC1(2)                            ================================HOX2a_HOX2a                --------->ANAC58                           <------ZmHOX2a(2)              --------->ZAT18              --------->ANAC58                           =================================HOX2a_HOX2a          --------------------   --------->TOE2(3)      <---------ARR14(2)            --------->At4g35610      <---------ANAC46 ----ARR11(3)             --------->ARR14(2)<-------GAMYB <---------ZAT18<---------GLK1(2)        <-- ->ANAC58        --------->YAB1<---------ARR14(2)       <---------At4g35610   xxxxxxxxxxxxxxxx>smallRNA(s) ->ANAC58       <---------ATHB12--------->GLK1(1)    <------ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(s)   attcacattaatctacaaatcaaaacgagatcggatttacttttgccgttgaagaggaagctcactttgggagcagattatcggcttggaagctacgacg  9570800                                                                     <------NtERF2                                                                    ------>NtERF2                                                                   <---------DEAR3(1)                                                                  <------NtERF2                                                                  --------->ATERF1(1)                                                                  --------->RAP2.3(1)                                                                 <---------RAP2.3(1)                                                                 <---------ATERF1(1)                                                                 ------>NtERF2                                                                 --------->LBD16                                                                --------->ATERF1(2)                                                                --------->DEAR3(1)                                                     --------->At4g35610                                                     <---------At4g35610                                                     <---------ZAT2--------->DEAR3(1)                                              <---------ARR14(2)<---------ATERF1(2)                                          --------->RAP2.3(1)   <---------DEAR3(1)                                          <------NtERF2        <---------LBD16                                         ------>NtERF2         --------->RAP2.3(1)                                         <---------ATERF1(1)   <------NtERF2                                         --------->LBD16       --------->ATERF1(1)                  <                                        <---------ATERF1(2)   <---------ATERF1(1)                  <-                                        --------->DEAR3(1)    <---------RAP2.3(1)       <---------TGA1a                 --------->LBD16        <---------DEAR3(1)   <---------DEAR3(1)         --------->TGA1a                 ----------->GT1        --------->ATERF1(2)<xxxxxxxxxxxxxxxxsmallRNA(i) --------->ANAC58          >>>>>>>>>AtCCA1              <---------LBD16    --------->O2                  --------->ANAC58      --------->At4g35610        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  --------->O2x      <---------At4g35610    --------->At4g35610     --------->ZAT2----------->HVH21    ============= ->WRI1   >>>>>>>>>AtLHY     <---------At4g35610     --------->GLK1(1)       ----------->GT1    xxxxx -------GLK1(1) <---------DEAR3(1)     --------->ATERF1(1)<---------O2      ----------->GT1    <xxxxx   atatcggaagctaactcgccggtgaaattagagctcaaatcgccggcgaaatcggagctcaagtcgccggcgacgaagtcggaaaaaatcacgtccgaag  9570900                       ------->GAMYB                      --------->DEAR3(1)                      ----------->HVH21              --------->LBD16             <---------LBD16            <---------LBD16         --------->GLK1(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------GLK1(2)   <------NtERF2      <---------MYB55(2) <---------DEAR3(1)   <---------MYB52(2) ------NtERF2<---------ANAC46  <-----------GT1 ----------HVH21      --------->MYB46(3)                                                          xxx xxxxxxxxxxxxxxx>smallRNA(i)<---------MYB52(1)                                                    --- ==============================MYC_MYB                --------->ATHB12                         <----- xxxxxxxxxxxxxxxxxx>smallRNA(se3)             <-----------GT1  <----------DOF2       <---------MYB52(1) xxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------AHL20(2)  <-----------GT1        <---------MYB52(1)   tcgtcggagagaatcgcgggagcaacgaccgtttttctatttttttttttactaaatgatttactctttattttgaattctccctcagttattcattaag  9571000                  --------->ALFIN1                               -------->HAHB4      --------->ANAC58                               --------->ARR11(3)      <---------ANAC55(2)              ----------->GT1           --------->ATHB12         --------->AHL20(2)      --------->ANAC55(2)      <---------AHL20(2)    <---------GLK1(2)            --------->ALFIN1      --------->ANAC58   --------->YAB1<------MYB83  <---------ARR11(3)          <-------MYC2 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <------MYB46(1)           <---------ICU4  ------->MYC2      -- -------->GT1   <---------ANAC46      <---------------AtSPL8    --------->ICU4   <-------MYC3   <---- ----TOE2(3)    <xxxxxxxxxxxxxxxxsmallRNA(s)       ----------->ARR10             ------->MYC3  <-----   atgtaattacgcatggtcgagtggtactcagaataaatggatggtacttagaatagattttccaaaatgatggcagaatagaacgtggctctataaatac  9571100                                                                   *TSS                                                               <---------CCA1(2)                                                             <---------ALFIN1           <----------ID1                                                           --------->LBD16              <---------ETT(2)                                                           ------>NtERF2<-----------HVH21------>NtERF2       --------->ZAT2                     --------->ANAC58--------->ANAC46         <---------ICU4       <---------ZAT2                   <-----------GT1<---------ARR14(2)         <---------ATHB51       <---------ZAT14           --------->YAB1--------------------->WRI1     ======================= -------->DOF2                   ----------->GT1       --------->ARR14(2)<------ZmHOX2a(2)<------NtERF2 -----ANAC55(2)        --------->At4g35610--------->ANAC58--------->ANAC58    <------ZmHOX2a(2) --TEIL--------->ZAT14 <---------At4g35610--------->ANAC46--------->ANAC58   --------->AGP1         <   ataaatcccagcagtgtttgccatcagctacaaaatagtaattcacgctccttgaacaatccgccatctctctcgatcagatcgataatggcgacaagtt  9571200                    <---------ZAT2                    <---------At4g35610                                        <---------ANAC58                   --------->ANAC58                                            <---------ANAC58               --------->ANAC58                                          <---------AHL20(2)               --------->ANAC58                                <---------TOE1(3)               --------->ANAC46                                <---------TOE2(3)               --------->AtLEC2                               --------->MYB52(1)       <---------ALFIN1           <-------TEIL                <---------DOF5.7(2)     ------>ZmHOX2a(1)        --------------->AtSPL8  <---------DAG2    --------->AHL20(2) ===========HOX2a_HOX2a  <----------DOF2           ------>ZmHOX2a(1)<-------TEIL ----------->GT1  --- ---------At4g35610--------->ANAC58--------->REM1(1)  <----------DOF2 --------->TOE2(3)          <---   tctgctcctccatctccatgcaagctcctttctcggtacatctctctcttctcctcctttttgctaacgatacattaatttgctcgttaatatcgattta  9571300                                  --------->YAB1                                  ---------->DOF2               <---------YAB1                  <----                     <---------YAB1                            --------->ARR11(3)              <-----              --------->TOE2(3)  <---------ATHB12              <---------ARR11(3)              <-----              --------------->AGL15                           --------->YAB1                   <-----              <---------------AGL15             <---------ARR11(3)                      <---------MYB52(1) ------>ATHB12--------->YAB1 <---------YAB1     --------->ARR11(3)                --------->GLK1(1)<- ------YAB1  ----------------->AGL3      <-------TEIL        <---------YAB1 ----------->RAV1(1)<-----   tcatttgcctcgataaccatattttgatactatcaataaagagttcataacatcttgatttttatgatcatacatttgcaacacaaatcccttagctatg  9571400                          <----------DOF2                      <----------DOF2 <---------HSFB2a(2) <---------ANAC58 --------->HSFB2a(2) <---------ANAC58                                                   --------->ANAC58 -----MYB46(3)  --------->ATHB12                                                        --------->ANAC46 ----TOE1(3)   ------>ZmHOX2a(1)                       --------->ANAC58             --------->MYB52(1) ----YAB1  --------->ARR14(2)                          --------->ANAC58            ------->GAMYB ----TOE2(3)   <---------YAB1             <---------AtLEC2                        <---------MYB52(2) --------REM1(1)<---------ICU4---------->ID1           --------->ANAC46--------->GLK1(2)--------->ANAC58 ----AtMYB61  --------->TOE2(3) <-------GAMYB----------->GT1--------->REM1(1)     --------->MYB46(3)   gttgtagaaaaactatcctcattgctttctttgtcgttgttaatgcatggtgaaaacaggctacaacaacaaggttctgtctcaacaaacaggctacgat  9571500                                                 <---------ANAC58                                            <---------MYB46(3)           <---------ZAT18                                     ----------->HVH21                   --------->ZAT14                                     --------->ANAC46                    <---------ZAT14                   --------->YAB1   --------->SPL7                       --------->ZAT18                   <---------ICU4 --------->TOE1(2)                 <---------ANAC58                --------->YAB1    --------->TOE2(2)            <---------TOE1(2)         ---------->DOF2        <---------At4g35610 <---------ZAT2  <---------ANAC58      --------->ZAT6       --------->YAB1       ------>ZmHOX2a(1)    <---------ANAC58   <---------ANAC46    <-----------GT1   tttcaacaatgaaaagactaataatctctccttcagcctacgacgtttgatgcctgctcgtctcgcagtttcttgtgcagtatgttgatttaactctata  9571600                                         <---------ANAC46                                         ----------->GT1                                 <------MYB46(1)                                 <------MYB83                                --------->MYB59                 --------->ANAC58                            <---------AHL20(2)                  --------->AtLEC2                           --------->AHL20(2)                   --------->ANAC58                           <---------AHL20(1)                  --------->WOX13(1)                           <---------ARR11(3)                --------->WRKY18(1)                           --------->ARR11(3)             <---------TOE1(3)          <---------ANAC58 --------->AHL20(1)             <---------TOE2(3)          <---------ANAC58 <---------AHL20(2)         <----------DOF2       <----------DOF2    <---------------AGL15  <-----------RAV1(1)             ---------->DOF2   tttcttcgactttcttgaggctgtttgaatatatttggtaatgtggtatatatgtggtttaaggtcaagcaagagacagtagagaaagtgtctgagattg  9571700  Previous    Next  AGI:  At5g27190.1    Description:  transposable element gene. Mutator-like transposase family, has a 1.3e-76 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 9567923    to: 9571167    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g27200.1    Description:  ACP5 (ACYL CARRIER PROTEIN 5); acyl carrier. similar to ACP1 (ACYL CARRIER PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G05020.1); similar to Acyl carrier protein SF2, chloroplast precursor (ACP) (GB:P07088); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain Acyl carrier protein-like (InterPro:IPR009081); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro domain Phosphopantetheine-binding; (InterPro:IPR006163) Range:  from: 9571188    to: 9571992    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version