Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------AHL20(2)             <---------AHL20(2)             --------->AHL20(2)             <-----------GT1         <---------AHL20(1)           <---------AHL20(1)               <------ZmHOX2a(2)         --------->AHL20(2)        --------->YAB1                    --------->At4g35610         <---------AHL20(2) <---------TOE2(3)               <---------YAB1   ----------->GT1      <----------DOF2<---------AHL20(2)  --------->AHL20(2)                  ------ ------GT1<---------AHL20(2)<---------TOE1(3)              <---------AHL20(2)        <---------YAB1   cgaattagtaattaattttatagtttctttaaggtaatcatatattttacaatttgtatattaaaattagcagatcaaactctgtttttgatagagaata  9548100                                           <---------MYB52(1)                                          <-------GAMYB                                         <------MYB83                                         <---------MYB46(3)                                         ----------->GT1         --------->AHL20(1)           <------                         --------------->AGL15          --------->TOE2(3)                    --------                         <---------------AGL15       <---------ARR11(3)                      --------                         ============================================================================                        ----------------->AGL1    <-----------GT1--------->AHL20(2)          --------                 --------->GLK1(2)       <------MYB46(1)<----------DOF2                    <---------            <---------YAB1               <---------DEAR3(2)      <---------AHL20(2)<---------HSFB2a(2)    <----------DOF2<---------ICU4       <---------DEAR3(1)      --------->AHL20(2) --------->HSFB2a(2) --->AHL20(2)--------->YAB1         --------->MYB59  --------->ARR11(3)        <----------DOF2-------   aataaactttgtttttgataatcttttcccttagaagtaaggtcggttattttgacatctttaaaaattaattgtataattctttttagaaatataccat  9548200                                                                                         <---------AHL20(2)                                                                                        --------->AHL20(2)                                                                                     <---------DAG2                                                                                     <----------DOF2                                                                                 <---------MYB52(1)           --------->YAB1                                                       --------->LBD16   --------->AHL20(2)                                                          --------->ANAC46 <---------TOE2(3)                                              <-----------GT1<---------ANAC58 ---------AGL15                                          <---------AHL20(1)    <---------ANAC55(2) --------->AGL1                                          --------->AHL20(1)    --------->ANAC55(2) --------->AGL3                                          <---------AHL20(2)    <---------ANAC58 =========MADS_MADS                                     <---------AHL20(2)     --------->HSFB2a(2) --------->AGL2             <---------TOE1(3)           --------->AHL20(2)    <---------LBD16 --GT1  --------->YAB1      <---------TOE2(3)           --------->YAB1        --------------->AtSPL8 -------->AGL15           ---------->DOF2           --------->ICU4          <-----------GT1         -   tttaagaaaataagaatagttttttttttaaaggtttttttttagttttttgtgaaaattatattttcacatgttttttttccgtaactttttaatagaa  9548300                    <---------AHL20(2)                    --------->AHL20(2)                                                          <----                    ----------->TBP         <---------HSFB2a(2)                                 -----            <---------AHL20(2)           --------->GLK1(2)          <------------------------ANAC81--        --------->AHL20(2)              <---------GLK1(2)         <---------MYB52(1)     ----------->HVH21        <---------AHL20(2)   ------>ZmHOX2a(2)                 <-------TEIL<----------DOF2      <----    <---------AHL20(2)     <---------ARR11(3)                --------->ARR14(2)    <----------DOF2 --   <---------AHL20(1)      --------->ARR11(3)         ---------->DOF2    ------>ZmHOX2a(1)  --------- -------->YAB1    ----------->TBP     <---------TOE2(3)      <---------ARR14(2) <-----------GT1 -----   aatcatatatttattttcttatatatatagatcgtcgattaagaatctcgaacccttatagcaaattcgttgctcctctttttttctttctctaacgcag  9548400                                                           <---------ANAC58                                                           <---------ANAC58                                                           <---------ANAC46                                                       ------->MYC3                                                       <-------MYC2     <---------ANAC58     <------------CBF             ------->MYC2     <---------ANAC58    --------->ATHB12              <-------MYC3 <----------DOF2        --------->ICU4                <---------ANAC58 -----ZAT2             <-----------TBP                <---------ANAC58 ---->ZAT2         --------->ANAC55(2)                <---------bZIP60(2) ------->ZAT2 ------>ZmHOX2a(1)------->TEIL     --------->At4g35610 -----At4g35610   <---------TOE2(2)       <---------MYB52(1) ------->At4g35610<---------TOE2(3)      =======================MYC_MYB >ANAC46----------->ARR10<---------AHL20(2) <-----------HVH21 ---->At4g35610   <---------TOE1(2)      <-------GAMYB<---------TGA1a                            <---   cagctttgcttaaatcctcttaggtatttattgaatctttctccgttgtcagtggaacgtggcttccaagtattagtttttgactaagtatagttctgac  9548500                                                                    <---------MYB46(3)                                                                  <---------MYB52(1)                                                                 <---------O2                                                                 <---------At4g35610                                                                --------->MYB55(2)                                                               <-----------RAV1(2)                                                              --------->TGA2(2)                                                              <---------MYB52(1)                                                             <-----------HVH21                                                             <-----------TGA1                                                            --------->ANAC58                                                            --------->TGA1a                                                            --------->O2                                                            <---------O2  <---------ZAT18                                                            ===============================bZIP_DOF                                                            <---------TGA1a                                                            --------->bZIP60(1)                                                            <---------bZIP60(1)               <------                                                            --------->ANAC58                ---------                                     =================================bZIP_DOF      <---------TOE2(3)                                     ---------->DOF2        --------->bZIP60(2)    ---------->DOF2                                  --------->TOE2(3)         =========================================          <---------At4g35610     --------->TOE1(3)         --------->TGA2(1) <---------------AGL15         <---------ANAC46   --------->ANAC55(2)             ==================================bZIP_DOF   --------->ARR11(3)  <---------GLK1(1) <---------GLK1(2)  <---------TGA2(1) --------------->AGL15 - -------DOF2     ---------->DOF2  --------->YAB1   <---------ZAT6<---------ZAT2 <----------DOF2  <---   tttgagatgttgagttgattaaagggtttctcgtaatcttaaagatgctcgtactgtttgagacgtcaggtggttttgcactctttaaagtattagatga  9548600                            <---------DAG2                            --------->TOE2(3)                            <---------MYB59               <-----------GT1                         <-----------GT1               ------>ZmHOX2a(2)              <-----------GT1                  ----------->GT1                    --------->ARR11(3)         --------->MYB52(2) ---REM1(1) <-----------RAV1(1)                      <---------ARR11(3)        <---------TOE1(2) >At4g35610<---------TOE2(3)--------->TOE1(3)     <---------WOX13(1)          <---------MYB52(1) ==========bZIP_DOF   --------->MYB52(2)        --------->ATHB12            <---------ANAC46 --------->DOF2  <---------TOE2(3)             <---------YAB1               <---------ANAC58 ------TOE2(3)   <---------TOE1(3)           <----------DOF2                <---------ANAC58   aggaaagctctctaatgttgaggttatttaccttattcattctcttactttcattgatcttaaccttgtctatatgtgtcgtttgtttttaatattctaa  9548700                                                                 <-------GAMYB                                                                <---------MYB46(3)                                                     <---------At4g35610                                                     <---------ZAT2   --------->At4g35610                          <---------ANAC58           --------->At4g35610  ---------->DOF2                          <---------ANAC58           --------->ZAT2   <---------At4g35610                         <---------------AtSPL8  <-----------HVH21   <---------TOE1(3)                     <---------ARR14(2)     --------->At4g35610 <------MYB83                     --------->ARR14(2)     <---------ZAT14     <------MYB46(1)                    <------ZmHOX2a(1)       --------->ZAT14  <------ZmHOX2a(1)     --------->YAB1                  <---------TOE1(2)         <---------At4g35610 ----------->GT1<----------DOF2   <---   gtatgtcaaatttgttcttgtaggatttgggtactgagttctactctgcagagtcagctcgaaggatggttaagctaaaagcttttcataagtttgacaa  9548800                                                                        <---------At4g35610                                                                    <-----------RAV1(1)            --------->ANAC58                                      --------->ZAT2            --------->AtLEC2                                      --------->At4g35610            --------->ANAC58                                --------->ARR11(3)               --------            --------->ANAC46                               --------->GLK1(1)                <--------      --------->GLK1(1)                           <---------YAB1  <---------At4g35610       --------- --------->At4g35610                              --------->ICU4  <---------ZAT2           <---------ARR11(3) <---------At4g35610                   --------->YAB1 ----------->GT1 --------->ALFIN1     --------->ARR11(3) ----------->RAV1(2)    --------->ANAC46        --------->YAB1--------->TOE2(3) ---------->DOF2  <--- ------ALFIN1          <---------REM1(2)  --------->MYB52(1)<---------ARR11(3)------>ZmHOX2a(2)------   cacatctgaactccaagcaagggtctacacaagtttttgaaaaataactgtgatgatggtgaaatcttagctgtggctgatccaaagcttggagatatca  9548900                                                                        <---------GLK1(1)                                                                        --------->GLK1(1)                                                                       <---------ARR14(2)                                                                       <---------GLK1(2)                                                                       --------->ARR14(2)                                                                    <---------ANAC55(2)                                                                   <---------LBD16                                                                  --------->MYB52(1)      --------->GLK1(2)                                          <---------SPL7      <---------ARR14(2)            --------->ANAC55(2)         <---------ANAC58          <------ZmHOX2a(1) ->ARR11(3)                    <----------DOF2                  <---------ANAC58       --------->HSFB2a(2) -GLK1(1)                 <---------YAB1                 <---------ANAC58            ------>ZmHOX2a(1) >GLK1(1)   <---------ANAC58  ------>ZmHOX2a(2)          <---------ANAC46   <---------ANAC58 ------YAB1 <---------ANAC46--------->ARR11(3)           <---------ANAC58   <---------ANAC58 --->YAB1   <---------ANAC58<---------ARR11(3)    <---------AHL20(2)--------->ANAC55(2)<---------HSFB2a(2)   tcacagagaaactggtgtgtattttgttatgatcttttacatatttctgtatatatatggcttgtgtcttacggatttgcttctctcctctaggacatag  9549000  Previous    Next  AGI:  At5g27140.1    Description:  SAR DNA-binding protein, putative. Identical to Putative nucleolar protein NOP5-3 (NOP5-3) [Arabidopsis Thaliana] (GB:O04656); similar to SAR DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G27120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42972.1); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687); contains InterPro domain NOP5, N-terminal (InterPro:IPR012974); contains InterPro domain NOSIC (InterPro:IPR012976) Range:  from: 9548545    to: 9550600    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version