Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->ALFIN1                                                                  <---------bZIP60(2)                                                                  =================================bZIP_DOF                                                                  ====================MYC_MYB                                                                  <---------TGA1a                                                                  =================================bZIP_DOF                                                                  --------->TGA1a                                                                  <---------ANAC58                                                                  <---------ANAC58                                                                  --------->O2                                                                  <---------O2                                                           <---------HSFB2a(2)                                                           --------->HSFB2a(2)                                                           --------->HSFC1(1)                                                           <---------HSFC1(1)                     ---                                                <---------CCA1(2) --------->ANAC55(2)            ----      <-----------GT1                       ------>ZmHOX2a(2)     <---------ANAC55(2)         ------- ---------DOF2                       --------->TOE1(2)  <---------ARR11(3)                    ------- -----ARR11(3)        --------->GLK1(1)    <------ZmHOX2a(2)      <---------ANAC55(1)   <----------DOF2 ---->ARR11(3)   ---------->DOF2     --------->TOE2(2)  --------->ARR11(3) <----------CDC5    -------   tctttgaataaccagacattaaagagttccatatgtaaacatccgatcgtatatcgaagttctcgaagacgtgtctcgctgagcaatggtctttacaagt  9540500                                                          --------->ARR14(2)                                                          <---------ARR14(2)                                                   --------->TGA1a                                                   <---------TGA1a                                                   <---------O2         --------->YAB1                          <---------ALFIN1 ------>DAG2                                  ------->GAMYB ------>DOF2                                  ===============MYC_MYB           <---------GLK1(2) -->ANAC58            <---------AtLEC2     --------->ARR14(2)            --------->ANAC58 -->ANAC58       <----------DOF2<---------ANAC55(2)--------->O2  --------->At4g35610 -->ANAC46       ============================================bZIP_DOF    --------->ANAC58      ------   aaagtagacattgatgagacttttgcataaaactacgtctcttcgtaaccccaacgtgagtattctctgatgcacaagcttgattcttcttagagacttg  9540600                     <---------ICU4                     ---------->DOF2                     --------->YAB1                    <---------ATHB12                    --------->ICU4               --------->ANAC58               --------->ANAC46         <---------ALFIN1        <---------ZAT18        --------->ZAT18                     <---------------AGL15             <------------CBF        <---------ZAT14                    ----------------->AGL3     <---------ANAC58        --------->ZAT14                  --------->GLK1(2)            <---------ANAC46    --------------->AtSPL8   --------->MYB46(3)                       <---------ANAC58 --->ALFIN1    --------->ANAC58  <----------DOF2             <---------AHL20(2)   gtgctattggtacactctcgcaataaagacaacaactttgaagattccatttcaagttcacatttttttttgtcgtgagagattgaaatgtgatcagtcg  9540700                    ---------->DOF2               ---------->DOF2              <---------YAB1                 <---------ANAC46                                <-------            --------->AHL20(2)            <---------O2              --------->AHL20(2) --------->AHL20(2)            --------->YAB1                --------->bZIP60(1)     --------->TOE2(3)    <---------AHL20(2)     --------->At4g35610   --------->ICU4 <---------bZIP60(1)     --------->YAB1    --------->ATHB12     <---------At4g35610   <---------YAB1 --------->O2        <---------MYB59      --------->ICU4 <----------DOF2 <---------TOE2(3)  --------->TOE1(2)      <----------ID1--------->MYB59<---------AHL20(2)   ctgctttagctaaattataaaggaaagacatgattcaaactacgacgtcgtttatactaatgggccaaacttaattaggcccaaaatgatttatttttct  9540800                                                  --------->AHL20(2)                                                  --------->YAB1                                             ------------>CBF                  --------->HSFC1(2)                       <---------TOE2(2)  <---------MYB52(1)          --------->GLK1(2)                       <---------TOE1(2)  --------->DOF5.7(2)         <---------ARR14(2)       ------                      --------->STY1(1)  <-------GAMYB     <------NtERF2       <---------HSFC1(2)         <---------ANAC46             ------>NtERF2    --------->ANAC58        --------->HSFB2a(1) <-         <---------ANAC58            --------->ANAC46  --------->ANAC46       ------->TEIL   --------         <---------ANAC58        ---------->DOF2 ----------->TBP     <---------GLK1(2)   --------->MYB46(3) ----GT1<-------TEIL  <---------STY1(1)<------NtERF2   --------->ANAC58   --------------->AtSPL8-----   aaattagcgatgcgttttaaaaccctaggttacaaaaacgcgccgttagcaataaaaacgcagcgttttgagaatctctgaaccttcttcaacaactata  9540900                              <---------At4g35610                              ----------->RAV1(2)                             ------>NtERF2                            <---------ARR14(2)                            --------->ARR14(2)                            *TSS                           <---------At4g35610                           <------NtERF2                           --------->ATERF1(1)                               <---------TOE1(3)                          <---------ATERF1(1)                                <---------TOE2(3)                         <---------RAP2.6(2)                           ------->GAMYB                        <---------LBD16                               <-----------------AGL1                     --------->GLK1(2)                              <---------DOF5.7(2) ----->TBP          --------->ARR14(2)  <---------At4g35610        --------->WRKY38(1) ----------GT1      <---------ARR14(2)  --------->At4g35610       --------->DOF5.7(2) ->YAB1             <---------GLK1(2) <-----------GT1         <---------ANAC46        ------->TEIL ---->YAB1       --------->YAB1 ------>ZmHOX2a(1)---------->DOF2 <-------GAMYB       <---------GLK1(2)   aaaaccatcttaaaccctagcagaatcgcggctcctgattttagctctctctaaagctgtagttgtgcgttaaccctctaaggtactgaatctctctcgc  9541000                                                                              --------->GLK1(1)                                                                             --------->ARR14(2)     <                                                                             <---------ARR14(2)     <                                                                             <---------GLK1(2)      -                                --------->HSFB2a(2)                       --------->ETT(1)          <                           --------->HSFC1(2)                            ---------->ID1             -                           --------->At4g35610      ---------->DOF2    <-----------RAV1(1)          -   <----------DOF2         <---------HSFC1(2) <----------DOF2        <----------DOF2   --------->GLK1(2)   cctctctttcttcgttgttatggcaaataagcttccaaaattctaagactttgacaaagtatagttctgttctttgtcggattttcaagaatttgaacag  9541100              <---------YAB1      --------->TOE2(3)      --------->TOE1(3)      <----------DOF2 --------->At4g35610                                                  <---------ANAC46 <----------DOF2 -----------ARR10                                                     <---------ANAC58<---------ANAC58 ---------ARR14(2)                                      --------->TOE2(3)      <----------DOF2 -------->ARR14(2)                                   <-----------GT1  <---------ANAC58<---------ANAC58 ---------ARR11(3)                             --------->DAG2        --------------->AtSPL3   ------- -------->GLK1(2)                             ---------->DOF2        --------------->AtSPL8<---------At4g35610 -------->ARR11(3)  <---------YAB1       ----------->GT1--------->TOE1(3)     --------->TOE2(3)   agtatctgccttaactattattctgatttgtaaacttcgaaacagggaaaaagttttaccttgaatattgtttcgtactagcttaatggctttagctcgt  9541200                                                                               ----------->GT1                             <---------At4g35610                             <---------ANAC58                        <----------DOF2                                      <---------ANAC46                  ----------->GT1                                         <------ZmHOX2a(1)                  <------MYB83                                         <-----------RAV1(2)                  <------MYB46(1)                                      <---------LBD16 --------->ZAT6  --------->MYB46(2)                                <----------DOF2 ---->GT1        --------->MYB111(2)      <---------GLK1(1)  <-----------GT1 <---------ANAC58   aaaacactaacttgcaagtttggtgactttgagttgattcaagggtttctcttaatcttgttttttcttcttttcaggagcttgtaaaaatgctaatact  9541300                  <-----------GT1             <---------MYB46(3)          <---------ZAT2          --------->ZAT2          --------->O2          <---------O2        <-----------RAV1(2)                                    ----------->GT1      ------>NtERF2                                           <---------TOE1(3)                    --     --------->ANAC46                                   <---------TOE2(3)     <---------ICU4       --     --------->ANAC58                   --------->TOE1(2)<-----------RAV1(1) <---------ATHB12      --     --------->ANAC58       ---------->DOF2  ---------->DOF2  <---------TOE2(3)       <----------DOF2   gtttgagacgccaggtggttttgccatcttcaaagtattaaacgaaggaaagctctctaatgttgaggttactaactaaatcattctcctttgttcattt  9541400  Previous    Next  AGI:  At5g27110.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16843.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83391.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9538575    to: 9540650    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g27120.1    Description:  SAR DNA-binding protein, putative. Identical to Probable nucleolar protein NOP5-1 (NOP5-1) [Arabidopsis Thaliana] (GB:O04658;GB:Q8H0T7;GB:Q9FPT6); similar to SAR DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G05060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73717.1); similar to SAR DNA-binding protein-1 [Pisum sativum] (GB:AAC16330.1); similar to matrix attachment region binding protein [Beta vulgaris] (GB:CAK22424.1); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687); contains InterPro domain NOP5, N-terminal (InterPro:IPR012974); contains InterPro domain NOS Range:  from: 9540928    to: 9543874    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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