Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --            --------->ANAC46                                                                       --            --------->ANAC58                                                                 --------        --------->ARR11(3)                                                                   ------->TEIL    ---------->DOF2                                                                        ------->GAMYB   ------->GAMYB                                                                        ------>MYB83  --------->MYB46(3)                                                                    --------->MYB52(1)  <---------MYB55(2)                                                       <---------GLK1(2)--------- ------>MYB83          --------->ANAC46                                  --------->ANAC58 --------->ANAC58 ------>MYB46(1)       --------->bZIP60(2)                           ------>MYB46(1)    ------>MYB46(1) -------->P --------->ANAC58    --------->YAB1                       ------>MYB83      --------->MYB55(1) -------->MYB55(1)   <---------ALFIN1   <---------ALFIN1             -------->P       <---------MYB55(2) --------MYB111(2)   ------->GAMYB     ------>MYB83                 ------>ZmHOX2a(1) --------->MYB46(3) ------->MYB46(3)    --------->AtMYB61 ------>MYB46(1)         --------->YAB1        --------->ANAC46 --------MYB46(2)--------->MYB46(3)  --------->MYB46(3)      ------->TEIL--------->ANAC46 --------->ANAC46 --------MYB111(1)  --------->MYB46(3)<---------ALFIN1    <---------YAB1 --------->ANAC58 --------->ANAC58   accaaccaaagaactcgccacaaccacatcacaaacatacccactcttcaccacaagagtatgaatcatcctaccaagaaactctctacccaacgcacca  9540300  --------->TOE1(3)  --------->TOE2(3) ------->ANAC58              --------->GLK1(2)            -------->P   --------->TOE2(3) ------->ANAC58    --------->DAG2                        ------->GAMYB --------->TOE1(3)        ----- --->RAV1(1)      ---------->DOF2                       <---------MYB111(2)                     <---- >ANAC46--------->YAB1  <---------DOF5.7(2)             --------->MYB46(3)          <---------YAB1 <-   taagccttaatcacattcggaaaagtaaacgaatcagggacacaaattgagcaattcaacaacctcttgaaaacctcaagagtgtcatgaaacattgagt  9540400                                                                    --------->ALFIN1                                                                  =================================bZIP_DOF                                                                  <---------ANAC58                                                                  =================================bZIP_DOF                                                                  <---------ANAC55(2)                                                                  --------->ANAC55(2)                                                                  <---------ANAC58                                                                  <---------ANAC55(1)                                                                  --------->O2                                                                  ====================MYC_MYB                                                                  <---------bZIP60(2)                                                           <---------HSFB2a(2)                                                           --------->HSFB2a(2)                                                           <---------HSFC1(1)                                                           --------->HSFC1(1)                     ---                                                <---------CCA1(2) <---------TGA1a                ----      <-----------GT1                       ------>ZmHOX2a(2)     --------->TGA1a             ------- ---->ARR11(3)                       --------->TOE1(2)  --------->ARR11(3)                    ------- -----ARR11(3)        --------->GLK1(1)    <------ZmHOX2a(2)      <---------O2          <----------DOF2 ---------DOF2   ---------->DOF2     --------->TOE2(2)  <---------ARR11(3) <----------CDC5    -------   tctttgaataaccagacattaaagagttccatatgtaaacatccgatcgtatatcgaagttctcgaagacgtgtctcgctgagcaatggtctttacaagt  9540500                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                   <---------TGA1a                                                   <---------O2                                                   --------->TGA1a         --------->YAB1                          <---------ALFIN1 ------>DAG2                                  ------->GAMYB ------>DOF2                                  ===============MYC_MYB           <---------GLK1(2) -->ANAC46            <---------AtLEC2     --------->ARR14(2)            --------->ANAC58 -->ANAC58       ============================================bZIP_DOF    --------->ANAC58 -->ANAC58       <----------DOF2<---------ANAC55(2)--------->O2  --------->At4g35610           ------   aaagtagacattgatgagacttttgcataaaactacgtctcttcgtaaccccaacgtgagtattctctgatgcacaagcttgattcttcttagagacttg  9540600                     <---------ICU4                     ---------->DOF2                     --------->YAB1                    <---------ATHB12                    --------->ICU4               --------->ANAC46               --------->ANAC58         <---------ALFIN1        <---------ZAT18        --------->ZAT14                     <---------------AGL15             <------------CBF        --------->ZAT18                    ----------------->AGL3     <---------ANAC46        <---------ZAT14                  --------->GLK1(2)            <---------ANAC58    --------------->AtSPL8   --------->MYB46(3)                       <---------ANAC58 --->ALFIN1    --------->ANAC58  <----------DOF2             <---------AHL20(2)   gtgctattggtacactctcgcaataaagacaacaactttgaagattccatttcaagttcacatttttttttgtcgtgagagattgaaatgtgatcagtcg  9540700                    ---------->DOF2               ---------->DOF2              <---------YAB1                 <---------ANAC46                                <-------            --------->YAB1                --------->O2              --------->AHL20(2) <---------AHL20(2)            --------->AHL20(2)            <---------bZIP60(1)     --------->TOE2(3)    --------->AHL20(2)     --------->At4g35610   <---------YAB1 --------->bZIP60(1)     --------->YAB1    --------->ATHB12     <---------At4g35610   --------->ICU4 <---------O2        <---------MYB59      --------->ICU4 <----------DOF2 <---------TOE2(3)  --------->TOE1(2)      <----------ID1--------->MYB59<---------AHL20(2)   ctgctttagctaaattataaaggaaagacatgattcaaactacgacgtcgtttatactaatgggccaaacttaattaggcccaaaatgatttatttttct  9540800                                                  --------->AHL20(2)                                                  --------->YAB1                                             ------------>CBF                  <---------HSFC1(2)                       <---------TOE2(2)  <---------MYB52(1)          --------->GLK1(2)                       <---------TOE1(2)  --------->DOF5.7(2)         <---------ARR14(2)       ------                      <---------STY1(1)  <-------GAMYB     <------NtERF2       --------->HSFC1(2)         <---------ANAC58             ------>NtERF2    --------->ANAC58        --------->HSFB2a(1) <-         <---------ANAC46            --------->ANAC46  --------->ANAC58       ------->TEIL   --------         <---------ANAC58        ---------->DOF2 ----------->TBP     <---------GLK1(2)   --------->MYB46(3) ----GT1<-------TEIL  --------->STY1(1)<------NtERF2   --------->ANAC46   --------------->AtSPL8-----   aaattagcgatgcgttttaaaaccctaggttacaaaaacgcgccgttagcaataaaaacgcagcgttttgagaatctctgaaccttcttcaacaactata  9540900                              ----------->RAV1(2)                              <---------At4g35610                             ------>NtERF2                            <---------ARR14(2)                            --------->ARR14(2)                            *TSS                           --------->ATERF1(1)                           <------NtERF2                           <---------At4g35610                               <---------TOE2(3)                          <---------ATERF1(1)                                <---------TOE1(3)                         <---------RAP2.6(2)                           ------->GAMYB                        <---------LBD16                               <-----------------AGL1                     --------->GLK1(2)                              <---------DOF5.7(2) ----->TBP          --------->ARR14(2)  <---------At4g35610        --------->WRKY38(1) ----------GT1      <---------ARR14(2)  --------->At4g35610       --------->DOF5.7(2) ->YAB1             <---------GLK1(2) <-----------GT1         <---------ANAC46        ------->TEIL ---->YAB1       --------->YAB1 ------>ZmHOX2a(1)---------->DOF2 <-------GAMYB       <---------GLK1(2)   aaaaccatcttaaaccctagcagaatcgcggctcctgattttagctctctctaaagctgtagttgtgcgttaaccctctaaggtactgaatctctctcgc  9541000                                                                              --------->GLK1(1)                                                                             <---------ARR14(2)     <                                                                             --------->ARR14(2)     <                                                                             <---------GLK1(2)      -                                --------->HSFB2a(2)                       --------->ETT(1)          <                           <---------HSFC1(2)                            ---------->ID1             -                           --------->HSFC1(2)       ---------->DOF2    <-----------RAV1(1)          -   <----------DOF2         --------->At4g35610<----------DOF2        <----------DOF2   --------->GLK1(2)   cctctctttcttcgttgttatggcaaataagcttccaaaattctaagactttgacaaagtatagttctgttctttgtcggattttcaagaatttgaacag  9541100              <---------YAB1      --------->TOE1(3)      <----------DOF2      --------->TOE2(3) --------->At4g35610                                                  <---------ANAC58 <----------DOF2 -----------ARR10                                                     <---------ANAC46<---------ANAC58 ---------ARR11(3)                                      --------->TOE1(3)      <----------DOF2 -------->ARR11(3)                                   <-----------GT1  <---------ANAC58<---------ANAC58 ---------ARR14(2)                             --------->DAG2        --------------->AtSPL8   ------- -------->GLK1(2)                             ---------->DOF2        --------------->AtSPL3<---------At4g35610 -------->ARR14(2)  <---------YAB1       ----------->GT1--------->TOE2(3)     --------->TOE2(3)   agtatctgccttaactattattctgatttgtaaacttcgaaacagggaaaaagttttaccttgaatattgtttcgtactagcttaatggctttagctcgt  9541200  Previous    Next  AGI:  At5g27110.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16843.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83391.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9538575    to: 9540650    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g27120.1    Description:  SAR DNA-binding protein, putative. Identical to Probable nucleolar protein NOP5-1 (NOP5-1) [Arabidopsis Thaliana] (GB:O04658;GB:Q8H0T7;GB:Q9FPT6); similar to SAR DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G05060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73717.1); similar to SAR DNA-binding protein-1 [Pisum sativum] (GB:AAC16330.1); similar to matrix attachment region binding protein [Beta vulgaris] (GB:CAK22424.1); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687); contains InterPro domain NOP5, N-terminal (InterPro:IPR012974); contains InterPro domain NOS Range:  from: 9540928    to: 9543874    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version