Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->AGP1                                                                                 --------->ARR11(3)                                                                          <---------MYB52(1)               --------->YAB1                                     <---------ANAC46              -----               <---------ICU4                                     <---------ANAC58          ---------   ---------->ID1<---------YAB1                                   <---------ANAC58<------ZmHOX2a(2) ---->ARR11(3)<---------ATHB12                            <-----------HVH21     --------->At4g35610 -----ARR11(3)--------->ICU4                             <----------DOF2 <-------GAMYB  --------->At4g35610 >RAV1(2)   --------->WOX13(1)         <-------TEIL<---------GLK1(2)    --------->MYB52(2)-----------   tttttgtcccatctcaatcatgaattgagcctgcatcgaagtccatggccctagaatcgctttcacttccttgttcgttatcagatcaagagctgtgaca  9537900    --------->ANAC58    --------->ANAC58    --------->ANAC46  <---------DOF5.7(2)                                                                               < <---------WRKY38(1)                                                                                - <---------WRKY12                                                                          <---------WOX13(1) <---------WRKY45                                                                        --------->ATHB12 ----->DOF2                                          --------->YAB1                     --------->ICU4 -->HVH21                                        ---------->DOF2                     --------->ICU4 - >GT1------->GAMYB      --------->AtLEC2      <------ZmHOX2a(1)         --------->ALFIN1<---------YAB1   aagtcaacgccaaggagtgttttgttatgcaaaaaaaaaacctttggaggagaaagcataaatgtagataagaagtgtgcatatgaactgatgattgatg  9538000                                                         <---------ZAT2               --------->ZAT14                           --------->ZAT2               <---------ZAT18                           <---------At4g35610       --------->ARR14(2)                                --------->At4g35610       <-----------ARR10                              <---------ZAT2       ------->TEIL                                   --------->At4g35610       <---------ARR14(2)                             <---------At4g35610      <---------CCA1(2)                              <-----------RAV1(1)    <---------O2  --------->ANAC58                 --------->ZAT2    --------->TGA1a                                --------->At4g35610    --------->ANAC58                               <---------ZAT2    --------->O2  --------->ANAC58                 <---------At4g35610    --------->ANAC55(2)                         ----------->RAV1(2)                             <----    --------->ANAC55(1)                         =================RAV                           ------    <---------ANAC55(2)                         ====================RAV                        ------    --------->ANAC46                           ------->TEIL                                    <-----    <---------TGA1a                       <---------ANAC46     --------->At5g28300            -------    --------->ANAC58                      <---------ANAC58    ----------->GT1               ------->GAMYB ---------ALFIN1  --------->AtLEC2        <---------ANAC58  <---------LBD16             --------->MYB46(3) -------->ANAC58<---------ANAC58      <---------GLK1(1) <-----------RAV1(1)          <---------WRKY38(1) -------->ANAC58<---------ANAC58--------->CCA1(2) <-----------RAV1(1)      <---------YAB1--------->MYB52(1)   acacacacgtatctcagtgcatgcaaatttagagaaatgggtatgcgtgtacctgctgctgctgcggtaacaacatcatttttggagtcaacaacggtgg  9538100                                                                                                 ----                                                                                               <-----  --------->ANAC58                                                                            <------  --------->ANAC46                                                                     <---------ARR14(2)  --------->ANAC58            ----------->GT1                                          <---------MYB52(1) ---GAMYB          --------->HSFB2a(2)                                                 --------->ARR14(2) --->MYB55(2)      <---------HSFB2a(2)                                                <---------RAP2.6(3) ----->GT1        <---------LBD16         ---------->DOF2               --------->ICU4<---------SPL7- ----MYB46(3)   <---------ARR14(2)     --------->YAB1                   <-----------RAV1(1)  -------- -->ALFIN1     <---------GLK1(1)    <---------GLK1(1)            ---------->DOF2  XXXXXXXXXXXXXXXXXXX   ttacaagccttgtttgggtttctggatgagaagagtagaaatcagaaagagacatgttgatacagagcaaagtcatgttggagtaagccgttccgatatc  9538200                                                                                         <---------TOE2(1) ----->WOX13(1)                                                                  --------->At4g35610 ----YAB1<---------ALFIN1                    ------>NtERF2                       <---------ZAT2 ---ARR11(3)                                ----------->HVH21        ---------->DOF2     <---------TOE1(1) -------->YAB1                              --------->DEAR3(1)       --------------->AGL15    <------ ->GLK1(1)                   ------>ZmHOX2a(1)           <------ZmHOX2a(1)       --------->ZAT2 X>MIR171B/C         <---------MYB46(3)<----------DOF2<-----------RAV1(2)        <---------At4g35610   attcacgattcccacatttacattggttatcctattttgtgcttctccgacctgcatcaggaagacgattacaaagaagagtaagctgagaacgaggttg  9538300                                                                                <---------ANAC46                                                                                <---------ANAC58                                                                           <---------ANAC46                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                           --------->ALFIN1                                                                           <-----------RAV1(1)                                                                           <---------REM1(1)            <---------AHL20(2)      ---------->DOF2                      <---------ANAC58   <------------------------ANAC81  *TSS     ------->TEIL                <---------ANAC58 <----------DOF2 <-----------GT1   <<<<<<<<<TBF1--------->RAP2.6(2)             ------->TEIL    <---------ANAC58 <--- --P        --------->AHL20(2)--------->At4g35610   <---------AtMYB61 <----------DOF2     <---------MYB52(1)   ttttctctcttcattttattcttcttctacttagccgaaaaagaatgaaacttggtggtctatatgtatgctctttggtgtggcatgagaccctttggta  9538400                                                                    <---------At4g35610                                                                    --------->At4g35610                                                        <---------AHL20(1)                            ------->TEIL                <---------AHL20(2)                 --------->TOE2(3)                     --------->YAB1                ----------->GT1                       <---------AHL20(2)            --------->ARR11(3)         <---------AHL20(2)           <------NtERF2            <---------ARR11(3)         <---------AHL20(1)      <---------TOE1(3)             <-------        ----------->GT1<-----------GT1 --------->AHL20(2)      <---------TOE2(3)      --------->ANAC55(2) ---------CBF <------------CBF         --------->AHL20(1)--------->ICU4             <-----------GT1<-   attggagaagtcgtgatattgttaattacgaacttgttgaatttattccaaagtatataatatttaaggcagcaacttgtttttttttacatattctaat  9538500                                                                              <---------LBD16                                                                            <---------WRKY18(1)                                                                           --------->WRKY38(1)                                                                           ----------->HVH21                                                             --------->AHL20(2)          ---------->DOF2                                 --------->YAB1<---------ICU4           ----         --------->YAB1                                  --------->ZAT6 --------->ATHB12         <---    ------>MYB46(1)                                     <---------TOE2(3)  --------->WRKY12     -----    ------>MYB83  --------->MYB46(3)                   <-----------GT1  -------->ATHB1          -----   ----------->RAV1(1)                             <---------ICU4      <---------YAB1      <---------  ------->GAMYB<---------WRKY38(1)                 <--------HAHB4     --------->GLK1(2)   ----------- --------->MYB46(3)      ---------->DOF2        --------->YAB1       --------->YAB1     --------->O2 --YAB1  --------->AHL20(2)                   --------->AtLEC2  --------->TOE1(2) --------->ARR14(2) ----------GT1 <---------WRKY12 <------ZmHOX2a(1) --------->ICU4--------->TOE2(2) <---------ARR14(2)-   ttaaccaacaattaaagtcaaccgttgcaaaggaggagacttcgtctcatgcataattaacaataacataagaatcattgaccggattccatgtgaccac  9538600        --------->ANAC58 ----------->AGL15                                                                                 <- ------------AGL15                                                                               ---- ---->ANAC58                                                      <---------ZAT18<---------At4g35610 ---->ANAC58                 <---------ZAT2            ---------->DOF2<----------DOF2         ------- --GT1  --------->ANAC58     --------->ZAT2          <---------At4g35610         --------->At4g35610 >HVH21 --------->ANAC46     --------->At4g35610     --------->At4g35610 <-----------HVH21    ------- --------->DOF2--------->YAB1<---------At4g35610  ------>ZmHOX2a(1)<---------ALFIN1          ------->GAMYB   tcaaaagagcaagacactcataaacgttctcagctcgtaaatgagacctgtcctcagcaaagaaatggcacactttgtcactcatctcaatccaactgca  9538700                                    <---------At4g35610 --------LBD16          <----------DOF2 -->NtERF2 ------>ZmHOX2a(1)        --------->At4g35610                                            <- -->At4g35610       <---------CCA1(2) ----------->HVH21                                            <- -->ZAT14 --------->TOE2(3)      <---------AHL20(2)                                              <---   gcccggtttcttcctcaatcccatttctttcatttttaatctgactcgtcttgctgcatcccatgactcaccagaagcatacaaattgaacaagaccatg  9538800  Previous    Next  AGI:  At5g27100.1    Description:  ATGLR2.1 (Arabidopsis thaliana glutamate receptor 2.1). Identical to Glutamate receptor 2.1 precursor (GLR2.1) [Arabidopsis Thaliana] (GB:O04660;GB:Q0WSC5); similar to ATGLR2.2 (Arabidopsis thaliana glutamate receptor 2.2) [Arabidopsis thaliana] (TAIR:AT2G24720.1); similar to ATGLR2.3 (Arabidopsis thaliana glutamate receptor 2.3) [Arabidopsis thaliana] (TAIR:AT2G24710.1); similar to ATGLR2.4 (Arabidopsis thaliana glutamate receptor 2.4) [Arabidopsis thaliana] (TAIR:AT4G31710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43359.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75545.1); similar to unnamed protein pro Range:  from: 9535062    to: 9538336    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g27110.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16843.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83391.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9538575    to: 9540650    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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