Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                        xxxxxxxxxxxxxxxx>smallRNA(i)                        --------->LBD16                        --------->At4g35610                        <---------At4g35610                       <xxxxxxxxxxxxxxxxsmallRNA(i)                      xxxxxxxxxxxxxxxx>smallRNA(i)                   xxxxxxxxxxxxxxxx>smallRNA(s)                  xxxxxxxxxxxxxxxx>smallRNA(s)                  xxxxxxxxxxxxxxxx>smallRNA(i)                  --------->At4g35610                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                --------->YAB1               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)               <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             ------->GAMYBxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->MYB46(3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           -------->Pxxxxxxxxxxxxxxxx>smallRNA(i)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <xxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   <---         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                    ----         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                    xxxxx         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                 xxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                             --------->TOE2(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        xxxxxxxxxxxxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->HSFB2a(2)        <----------ID1 <-----------GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------HSFB2a(2)--------->DAG2      xxxxxxxxxxxxxxxxxxx   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------HSFB2a(2) ---------->DOF2---------->DOF2  <-------   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->HSFB2a(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)---   tagcaaacacatcaaccatcatcttccgctggattttgtgtttctcgagaaaaaaaaaatagaaaaaggagagagacaaaaagattgtaacctatgtaat  9463400                                                 ----------->GT1   --------->At5g28300                        --------->DAG2  ----------->GT1                            ---------->DOF2 ------AHL20(2)                         <---------ANAC58                               <---------ZAT14 ----->AHL20(2)                         <---------ANAC58                               --------->ZAT14 xxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------ANAC46   ----------->GT1  --------->DAG2  --------- xxxxxxxxxxxxxxx>smallRNA(se3)   --------->ANAC55(2)       <---------ANAC46---------->DOF2 ---------- xxxx>smallRNA(le3)              <---------ANAC55(2)       --------->ANAC55(2)  <---------ZAT18 xxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <----------DOF2    <---------REM1(2) --AHL20(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------DAG2  ------>ZmHOX2a(1) ------->DOF2          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------ANAC55(2)  --------->ZAT18   taaagggtaaataagtcaaattgcccatacaaaatacctattccttgaaaagtgtataatcgcgtaaatactttttaaaaagtgtcctctacactgtaat  9463500                                                    ----------->RAV1(1)                                                   <----------ID1     --------->TOE2(3)                            <---------At4g35610     --------->TOE1(3)   <-----------GT1     ------>ZmHOX2a(1)                                ------- >At5g28300    --------->PCF2           <----------DOF2                                       <------ ->GT1    <------------CBF      <---------AHL20(2)--------->At4g35610                         -------   atagaaaccctaaattgctcccactattttctatttcattcgctttcctctcagcgacaaaacaaaactcttcgctctctgtcttctctctgtctctgct  9463600                 <-------GAMYB                <------MYB83                <---------DEAR3(2)       <---------AHL20(2)   <---------AHL20(2)  --------->AHL20(2)  --------->ARR11(3)  <---------ARR11(3)  <---------AHL20(2)  --------->AHL20(1)                                                        <---------AHL20(2)  <---------AHL20(1)   <----------DOF2                                <----------DOF2   <----------DOF2 -->At4g35610   <------MYB46(1)                                 --------->LBD16     <---------ZAT18 < ---ZAT2       <---------DREB2C(2)           ------>MYB46(1)   --------->ANAC46    ---------->ID1   < -->ZAT2--------->ATHB12                     ------>MYB83     <---------LBD16--------->ATHB12       <   cgaatatatttgattagtcggtcgtctttttctctaacttgtttaccaacgcttacttctcttccccgcaggctttatttgattagtcccctttctctaa  9463700                                                                                      --------->LBD16                                                                                     <---------HSFB2a(2)                                                                                     --------->HSFB2a(2)                                                                         <---------ANAC58                                                                         <---------ANAC55(2)                                                                         <---------ANAC55(1)                                              ---------->ID1         <---------At4g35610                                       <---------ANAC46              --------->At4g35610                                    <---------MYB52(1)          <---------YAB1<---------ZAT14       <                                   <-------GAMYB          <---------ANAC46  --------->REM1(2)<-------            --------->YAB1        <---------ANAC46     <---------ARR14(2)<---------ANAC58<---------ZAT14 ---------ANAC46                  <---------ANAC58     --------->ARR14(2)--------->O2<---------HSFC1(1) ---------ANAC58                  <---------ANAC58     --------->ARR11(1)<---------ANAC46--------->ZAT14 ---------ANAC58               <---------MYB52(1)      <---------GLK1(2)<-------TEIL --------->HSFC1(1)   tttcgtttaatctttgatcatctgtttccttctgtttcgttgtgttttgttgtaatggattcgggtatgagagctacgtgtacagttccagaacactttc  9463800                                                          --------->GLK1(1)                                                  ------>NtERF2                                                  --------->LBD16                                                 --------->ANAC58                                                 --------->ANAC58                                 ---                                                 --------->ANAC46                                 ---                                               <------ZmHOX2a(2)                                  ---                                               --------->CCA1(2)                                  <--               --------->ANAC58                --------->ARR14(1)                                 ---               --------->ANAC58               <---------ARR14(2)                                  ---               --------->AtLEC2               <---------GLK1(2)                                   ---    <------ZmHOX2a(1)                         --------->ARR11(3)                                -----  <---------------------WRI1                  --------->ARR14(2)                            --------- <---------LBD16                            ----------->ARR10                               --------- --------->LBD16                         --------->MYB52(1)                             --------->ANAC46 ---------ANAC46 --------->YAB1  <-------TEIL --------->AGP1                            --------->ANAC58 ---DOF2       --------->ANAC46<---------GLK1(2)------>ZmHOX2a(2)                       --------->ANAC58   ttccgaggaaactttccaagcaaaacttggacagattcatcccaaacagatccgccaaggatttcgattttgctaactacgctcttacccaaggaagcaa  9463900    --------->TOE2(3) --------->ARR14(2) <---------ARR14(2) ------>ANAC58 ------>ANAC55(2)                           --------->ANAC55(2)       --------->ARR14(2) ------>ANAC58                              <---------ANAC55(2)       <---------GLK1(2)      <------- -------ANAC55(2)                           --------->ANAC58          <---------ARR14(2)     -------- ------>ANAC55(1)                      --------->REM1(1)           --------->YAB1         <----------DOF2 ------>ANAC46                 ---------->DOF2          <---------AtMYB61         <---------ARR14(2) ------>YAB1          <---------At4g35610----------->TGA1<---------MYB46(3)       <---------GLK1(2) ---->MYB52(1)        --------->At4g35610----------->HVH21<-------GAMYB           --------->ARR14(2) >ANAC58    ----------->GT1 --------->ANAC58--------->ANAC46     ------->TEIL   --------->LBD16 >ANAC58   <---------TOE2(3)--------->ANAC58--------->ANAC58  <---------YAB1   --------->ANAC55(2) <-   acgtaacctcgatgaggtaacttcagcatcaagaaaagcctacatgacgcaattggctgtggttatgaatcagaatcgcacccgtattctcgctttcaga  9464000       <---------CCA1(2)                                    --------->LBD16    --------->TOE1(3)     <---------ATHB12                 --------->ANAC46             --------->ZAT14    <---------MYB59      ------>MYB83                 ---------->DOF2       <-------TEIL<---------ZAT14    --------->TOE2(3)    ------>MYB46(1)           --------->TOE2(3)       --------->CCA1(2) --HSFB2a(2)            --------->WOX13(1)         --------->TOE1(3)    <---------TOE1(2) ->HSFB2a(2)    <----------DOF2              --------->AtMYB61---------->DOF2      ------>ZmHOX2a(1) --------MYB52(2)   <-----------GT1      ------>ZmHOX2a(1) <---------ANAC55(2)    --------->TOE2(3)   aacaaacctaaatctctgctttctaccaatcactctgactctcctcaccaaaaccctaaacccgtaaagcctcgtagatacattcctcagaatagtgaga  9464100                                                              <---------DOF5.7(2)            <-------PIF5                          --------->ALFIN1            ------->PIF5            <---------MYB52(1)        --------->MYB52(1)           ----------->RAV1(2)     --------->TOE1(3)      <---------ZAT6                         <---          ------->TEIL             --------->TOE2(3)   <---------DEAR3(1)      <----------DOF2   <---   gagtcttggatgcacctggacttagggatgacttctcccttaacttgttggactggggcagtgctaacgtcttagccatagctttgggagacactgttta  9464200        <---------ANAC58        <---------ANAC58       --------->HSFB2a(1)       <---------HSFB2a(1)                                         --------->ANAC58       --------->HSFC1(2)      <---------ANAC58                    --------->ANAC58              ----       <---------HSFC1(2)      <---------ANAC58              <-----------HVH21                  <---- ------ANAC58                 <---------ZAT2    <----------ID1----------->HVH21                <----- ------ANAC58      <----------DOF2    <---------YAB1   ----------->HVH21 <-----------GT1 --------->ARR11(3)   cttgtgggatgcttccagtggctctacgtctgagcttgtgactattgatgaagacaagggacctgtcacaagtattaactggacacaagatggtcttgat  9464300  Previous    Next  AGI:  At5g26900.1    Description:  WD-40 repeat family protein. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G27080.1); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G27570.1); similar to CDC20.1, signal transducer [Arabidopsis thaliana] (TAIR:AT4G33270.1); similar to hypothetical protein [Brassica napus] (GB:CAA11819.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro domain Cdc20/Fizzy (InterPro:IPR000002) Range:  from: 9463755    to: 9465089    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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