Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              ------>ZmHOX2a(2)           <------ZmHOX2a(2)           <---------GLK1(1)          <---------ARR14(3)          --------->ARR14(3)          --------->ARR11(3)          <---------ARR14(2)                                                                   <-----          <---------ARR11(3)                                                               <---------LBD16          --------->ARR14(2)                                                     <---------ANAC46         --------->GLK1(1)                                                       <---------ANAC58      ------->GAMYB                                                              <---------ANAC58   --------->MYB52(1)                                                       <---------------AGL15  ----------->HVH21                                                        ----------------->AG------  <------NtERF2                                                            <-----------------AGL2 ------>NtERF2                                                             ----------------->AGL1 -------->ANAC46                            <---------LBD16               <-----------------AG ------ ------->RAP2.3(1)                       <---------YAB1           ----------->HVH21  <---------GLK1(1) ------DEAR3(1)             --------->At4g35610                   ----------->TGA1   --------->GLK1(1) -ARR10  <---------GLK1(1)  <---------At4g35610              <------NtERF2<-----------------AGL1   cggcgcaacggagatctcagtggcaagtctagctgaatcgcttatgctcggagtagccatagcggcgaatgacgcttcccatttcgggtttctcgcggtt  9436900                             --------->YAB1                           <---------WOX13(1)                         --------->ATHB12                        <------NtERF2                     ------>NtERF2                    <XXXXXXXXXXXXXXXXXXXXMIR172C/D <---------GLK1(1)                   <---------ANAC58          <---------ANAC46                   <---------ANAC46         --------->At4g35610    <----------DOF2<---------RAP2.6(2)      <---------At4g35610 ----ARR14(2)      <---------ANAC58       <---------WOX13(1)       ---------->DOF2 --->GLK1(2)  <-----------RAV1(1)    <---------At4g35610   <---------ATHB12 --->ARR14(2) <---------MYB46(3) --------->GLK1(2) --------->GLK1(1)                ------>ZmHOX2a(1)   ctgtctcttttatcagttgttgcggcctcattgatattctgcagattgctgagaaatcccactgatgaacaaagacgactcttctccttcgaccctctct  9437000                                                                                   <---------AHL20(2)                                                                                   --------->AHL20(1)                                                                             ----------->GT1                                                                           ---------->DOF2        ---                                                                        ----------->GT1         <----                                                                       --------->DAG2         <------                                                                      ---------->DOF2         <------                                                                     <---------AHL20(2)    <---------             <----------DOF2                                     --------->AHL20(2)--------->AHL20(2)   --------->ATHB12   --------->AHL20(2)      <----------DOF2  <----------DOF2    --------->AHL20(2)   caaattgatttggagcttttacattgaaatatttgtatagtagtttcactttcagtgtataaattctttatataaagtaaagaaaaaaattgactttggt  9437100 -------->GT1 -----ANAC46                                          --------->ZAT14         <-----------GT1       < ---ANAC58                     <---------ICU4         <---------ZAT14      <---------YAB1      <----- ---ANAC58                  <---------ICU4     --------->DAG2      --------->TOE1(3)          <------ -DOF2                      --------->AtMYB61 ---------->DOF2      --------->TOE2(3)          -------   gtgaaaaattcaagaagtattccacttccaccattactactctaaacaaaaagtactaaactggctaaaccttagttatttttctaaaccgagaattaac  9437200                                                             <---------MYB46(3)                                                        <------MYB83                                                        <---------DEAR3(2)                                                        <---------MYB46(3)                                                        <------MYB46(1)        ------------>CBF                  --------->ANAC58   <------MYB83       <-----------GT1                    --------->ANAC46  --------->MYB59     --------->AHL20(2)                   --------->ANAC58<---------MYB52(1)     <---------AHL20(2)                 <-----------GT1<---------DEAR3(1)                           *TSS ---------ARR11(3)             --------->MYB52(1)     <---------ORA47(1)               ----------->TGA1 ----TOE2(3)                --------->At4g35610    <---------AtMYB61                   ----------->HVH21 -----GT1--------->MYB46(3)--------->ANAC58    <---------DAG2<------MYB46(1)         ----------->RAV1(2) -->MYB52(1)               --------->ANAC58------------>CBF <---------AtMYB61 <----------DOF2--------   gagataatttaacaatcgatttcaaaaaccagcaaaccgaaatcacccaatttttggtcggtttggttcgattttgttttctttcacccctgacgaagaa  9437300                                   ----------->HVH21                    <---------At4g35610                    --------->At4g35610                          --------->RAP2.6(3)    <-----------GT1      --------->TOE2(3)   --------->TOE2(3)                    <---------SPL7       <---------DEAR3(2) --->GT1      <---------ALFIN1  --------->TOE2(3)        ------>ZmHOX2a(1)        ---------->ID1  <<<   aaaaaaaaccctagtcacactcagataacataaacctttgacaacaaattttgatgctccttcgtcttacggctcgctctattcgtcgtttcacaacttc  9437400                                                                                            <------NtERF2                                                                                           <---------RAP2.6(3)                                                                                           ------>NtERF2                                                                                           <---------                                                                                           <---------                                                                                          --------->RAP2.6(2)                                                                                          --------->DEAR3(1)                                                                                          --------->RAP2.3(2)                                                                                          --------->RRTF1(3)                                                                                          --------->DREB2C(2)                                                                                          --------->RRTF1(2)                                                                                          --------->RAP2.3(3)                                                                                         --------->RRTF1(1)                                                                                         --------->ERF1                                                                                         --------->RAP2.3(1)                                                                                        ------>NtERF2                                                                                        <---------ATERF1(1)                                                                                 <---------CCA1(2)                                                                                <-----------ARR10                                                                                <---------ARR14(2)                                                                                --------->ARR14(2)                                                             <---------ICU4     <---------ARR11(1)                                                             --------->YAB1     ------->TEIL<--------                                                            <---------ATHB12   <---------ARR14(1)                                                       <---------At4g35610     <---------CCA1(2)                                             <<<<<<<<<<<<<<<<<LFY            <---------ANAC58                                           <-----------------AGL1 ------>ZmHOX2a(1)     --------->LBD16                                    <-----------GT1    <------NtERF2<---------TOE2(3)  --------->ANAC46                               <---------MYB52(1)      <---------ZAT2 <------ZmHOX2a(1)--------->DEAR3(1) <<<<<<TBF1 --------------------->WRI1 <---------ZAT6  --------->At4g35610   <---------ANAC58     ---   ttcttcgtctctaccattgctctcatcgtcttcgttttgtactgttccaacaatggcagctaatcatcctaaggatgaagcgtatctctccgccgtcatc  9437500                         <------ZmHOX2a(2)                                  --------->ANAC58                         --------->CCA1(2)                                  --------->ANAC58                        --------->ARR14(2)                                  <---------ANAC55(2)                        <---------ARR14(2)                                  ----------->GT1                        <---------ARR11(3)                               <------ZmHOX2a(2)                        <-----------ARR10                            ------>ZmHOX2a(2)                        --------->AGP1          --------->YAB1      <------ZmHOX2a(2)                       --------->At4g35610    --------->ARR14(2)   <---------ARR14(2)                       --------->GLK1(1)      --------->GLK1(2)    --------->ARR14(2)      ------->TEIL  <---------At4g35610       <---------ARR11(3) --------->ANAC58 --TGA1           --------->HSFB2a(2)         <---------ARR14(2) --------->ANAC58 --HVH21          <---------HSFB2a(2)         <-----------ARR10  --------->ANAC46 -MYB52(1)   <----------DOF2      <-----------ARR10          <---------ALFIN1 --------->AHL20(2) ------>LBD16<---------DAG2  --------->ANAC46<---------GLK1(2) --------->ANAC46         ------>NtERF2   cccaaacgtatcaagcttttcgagcagatccaagcgaatcaactcgagaatcttaagtctcttccacacgatccgatcaagtaaatacgatgccgatgtt  9437600                                                                                             --------                                                                                     <---------TOE2(3)                                                                                     <---------TOE1(3)                                                                           <---------ANAC58<---------ANAC58                                    <----------DOF2 <---------WOX13(1)     <---------ANAC46<---------ANAC55(2)              <---------ANAC46   <-----------GT1 <---------YAB1            <---------ANAC58<---------ANAC58    ------->TEIL           <---------TOE2(3)<---------ANAC58             <---------ANAC46  --------->ANAC55(2) --------->ANAC55(2)       <---------TOE1(3)<---------ANAC58       <-----------RAV1(1)<---------ZAT6   cttatgtatcagtgtgatttgtagtttataaggttttactttgtttccttgaagattgacttcgattttctggtgttgtgtgtgtttagggttacgttac  9437700                                                                                                  <--                                                                                                 <---                                                            --------->GLK1(1)                    ----                                                     --------->ZAT2                            <-----                                                     <---------ZAT2                          <-------                                                     --------->At4g35610                    ---------           ---------->DOF2    <----------ARF1        <---------At4g35610             <-------GAMYB<--     <---------GLK1(1)    --------->ALFIN1    --------->GLK1(1)                     <---------ANAC46 ->DOF5.7(2)       ---------->DOF2            <---------GLK1(1)       --------->ALFIN1    xxxxxxxxxxx   cagatggaaatgtgaaagaaggaaagaagtgggagacaactccgatggatatcgctgctcagatttctaagggtttggctaattctgcgttgatttcggc  9437800  Previous    Next  AGI:  At5g26820.1    Description:  ferroportin-related. similar to iron-responsive transporter-related [Arabidopsis thaliana] (TAIR:AT5G03570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17418.1); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 9433622    to: 9437108    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g26830.1    Description:  threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS). Identical to Threonyl-tRNA synthetase, mitochondrial precursor (THRRS) [Arabidopsis Thaliana] (GB:O04630;GB:O81907;GB:Q84TG4;GB:Q94AG0); similar to EMB2761 (EMBRYO DEFECTIVE 2761), threonine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT2G04842.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ50872.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45124.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40920.1); contains InterPro domain Aminoacyl-tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro doma Range:  from: 9437300    to: 9441782    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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