Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------LBD16                                                                                   --------->At4g35610                                                                                   <---------At4g35610                                                                                  --------->MYB52(1)                                                     --------->LBD16             ------->GAMYB                                                    --------->ANAC46            --------->MYB46(3)                                                    --------->LBD16            -------->P                                                   --------->HSFB2a(2)       --------->MYB46(3) ---->ARR11(3)                                     --------->LBD16       <---------AHL20(2) -----ARR11(3)                                     <---------HSFB2a(2)   --------->AHL20(2)       <-- ----GLK1(2)--------->ANAC46       ------->TEIL   <---------LBD16     --------->WOX13(1)          <--   tctcattcaacttcaccgaatcaaactccaatgtacgagcctcttgcaaactccccgaaaacgttttgctatcaattaaacaaccagcggagcaaaactt  9406900                                                                --------->HSFC1(2)                                                     --------------->AGL15                                               --------->HSFC1(2)                                               <---------HSFC1(2)                                             <---------MYB52(1) <---------HSFC1(2)                     --------->TOE1(3)  --------->ARR14(2) <---------HSFC1(1)                     --------->TOE2(3)  <---------ARR14(2) --------->HSFB2a(2)                     <---------DAG2    --------->GLK1(1)   <---------HSFB2a(2)       ------>ZmHOX2a(1)               <---------GLK1(1)   --------->HSFC1(1)                --------       ----------->GT1               ------->GAMYB   <---------------AGL15     --------->GLK1(1)    - -------ANAC58--------->YAB1        --------->ANAC46----------------->AGL1     <---------GLK1(1)  <-- -------ANAC58----------->GT1  ------>ZmHOX2a(1)    ----------------->AGL2----------->GT1---------->DOF2   gctcgtctcctgtaaatcgtaaaccttatggtccttcaacgaaatccgatacttccctcttctagaaacatcggaagggagaaatctctggcaaagagta  9407000                                                                              --------->ARR11(3)                               <---------TGA2(1)                            ----------->ARR10                               --------->TGA2(1)                          --------->REM1(2)                               <---------bZIP60(1)                      --------->LBD16                               --------->bZIP60(1)                      ------>NtERF2                              ----------->STF1                          <------NtERF2                            ----------->HVH21      =======================HOX2a_HOX2a ------->GAMYB              ----------->TGA1       ------>ZmHOX2a(2)   --------->DEAR3(1) --->GT1                <---------ZAT14      <---------At4g35610    <---------DEAR3(1) -------->MYB46(3) <---------ANAC58<---------ARR11(3)               --------->ANAC46       --------->ATHB12 ---------GT1      <---------ANAC58--------->ARR11(3)              ------>ZmHOX2a(1)   <---------YAB1   taaccacagagcttagcgattgctcgttcagtgacgacatcttcgtaatctgatcgagacattaacttcctcgccgcgaagagctggttctgatcagtgg  9407100                                                   <---------ANAC58                                                   <---------ANAC58                                               <-------GAMYB                             ------->TEIL     <---------MYB46(3)                      <---------ANAC58  <---------DOF5.7(2)                            ----------->GT1                      <---------ANAC58<---------MYB52(1)      ------>ZmHOX2a(1)  --------->ANAC58 <--               --------->At4g35610    --------->DOF5.7(2)     <----------DOF2    --------->ANAC58<---               <---------At4g35610   --------->TOE2(3)     <---------YAB1        --------->ANAC46<---   tattttcgagcatatagagctgaagcttgtgaaccgcatcgttaatggcgattgcttcattatcctttgccatttttctgcaaacgaaattgaaaaattg  9407200                                                                                     --------->ANAC58                             ------->GAMYB                                           --------->ANAC58 --------DOF2               --------->ANAC46                                       ---------->DOF2 -- ------ANAC58  <---------TOE2(3)           --------->LBD16                    <---------At4g35610 --- ------ANAC58  <---------TOE1(3) <---------ATHB12                       --------->At4g35610----------   cttcaagttcggaatttagggtttttctcaacgaaatcaatttcccccaaaaacacttgaggcagactcgagagagcttaagcagagaagccagaaagct  9407300                                                          --------->ANAC46                                                          --------->ANAC58                                                          --------->ANAC55(1)                                                --------->DAG2                                            ----------->HVH21                                          --------->O2    <---------ANAC55(2)                                          <---------At4g35610                                     --------->ANAC58     --------->ANAC58                          --------->ANAC55(2) ---------->DOF2                       ------>ZmHOX2a(1)<-----------RAV1(2)          ====================HOX2a_HOX2a <---------ZAT2  --------->ANAC55(2)          ===============================HOX2a_HOX2a   <-------TEIL          <------ZmHOX2a(2)          --------->ANAC58<-------GAMYB    *TSS <---------ARR11(3)       ------>ZmHOX2a(1) <---------MYB46(3)     <------------CBF ------->DAG2 --------->ATHB12   --------->TOE2(3)  <---------DEAR3(2)    --------->ATHB12        <-- ------->DOF2<---------YAB1      --------->TOE1(3) <---------DEAR3(1) <------NtERF2          -------- >DOF2   --------->ARR11(3) <---------ICU4--------->At4g35610 <------------CBF ----------->GT1  -----   aaaagtgatgagatcatgaatggtccttacttattccttaagccaggtgaaaggcggttcacgtaattgggccgagtaattgggttacattatgggccaa  9407400                                                                   <---------GLK1(2)                                                                <---------AHL20(2)                                                                --------->AHL20(2)                                                  --------------->AGL15                                         <---------YAB1  <------MYB83                                   --------->AHL20(2)    <------MYB46(1)                       <-----                                  --------->AHL20(2)     ----------->GT1                       ------                                  <---------AHL20(2)    --------->MYB59       <---------AHL20(2)   -- ----------CBF                =====================================MADS_MADS <---------YAB1   <------ ---->CBF----------->GT1      --------------->AGL15 --------->ATHB12        --------->AHL20(2)------- ---->ICU4                 <-----------GT1       <-----------------AG  <---------YAB1  <----------DOF2   tattgttcaacagggaaaatgtcatcagtttaccatttaaaatatgaaaactcttgatttggtaatttaaattctcatttttattttgactttcaattta  9407500                                                                --------->AtMYB61                                                                ------->GAMYB                                                            <---------WRKY12                                                            <---------WRKY38(1)     <---------ARR11(3)                                    --------->WRKY18(1)     --------->ARR11(3)                           --------->ANAC58 ----AHL20(2)                                     --------->ANAC46 --------->HSFB2a(2) --->AHL20(2)                             <----------DOF2--------->WOX13(1) ------->YAB1                      <---------GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       >>>>>> ---AHL20(2)                   <-------TEIL       --------->ANAC58 <---------HSFB2a(2) <---------ARR14(2) -->AHL20(2)                  --------->CCA1(2) <-----------GT1--------->MYB46(3)      --------->ARR14(2)   atcacgagttcttgtaaactaaactaattgagatacaaattcttctttttttacgccatcagtcaacctccagacaagagattacttcgaattcgaagaa  9407600                   <----------DOF2              --------->GLK1(2)                  ------>ZmHOX2a(2)      <---------ARR14(2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->GLK1(2)             --------->DAG2                                --------->YAB1     <---------GLK1(1)             ---------->DOF2                             --------->WOX13(1)     --------->GLK1(1)<-----------------AGL1   --------->ARR11(3)            <---------ATHB12 >>>TBF1    ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(i)       <---------TOE2(3) <---------ATHB12   gaagagggaatccaaaaatcggttttcggttttgggataaagggtatgtgatctagggaatttctaacgatgtctcttaatcaatgaaaatttgtgttta  9407700                                                             ------>MYB46(1)                                                             ------>MYB83                                                            --------->MYB52(1)                                                           --------->TOE1(2)                                                           --------->TOE2(2)                     ----                          --------->AHL20(2)              --------->MYB46(3)                     <---                      <------ZmHOX2a(1)          <---------YAB1------->GAMYB           <---------WOX13(1)              <---------AHL20(2)                <---------TOE2(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->YAB1  <---------AHL20(2)  <---------AHL20(2)     ----------->GT1  <---------AtLEC2  ---------->DOF2   <---------TOE2(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------YAB1   <----   aactgaaagtcaacataatattgaggatttaaatcaccaggtccaaaatttatgtttaaaaccaacgaaaatggtaaactgattatttgaatgacatttt  9407800  Previous    Next  AGI:  At5g26760.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN62034.1) Range:  from: 9403601    to: 9407304    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g26770.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17354.1) Range:  from: 9407723    to: 9410120    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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