Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <-------MYC3                                                                   ---------             ------->MYC3                                                      --------->YAB1            --------->O2                                            --------->ARR11(3)    <---------TOE2(3)       --------->bZIP60(1)                                      <---------ANAC58    <---------At4g35610       <---------bZIP60(1)                                      <---------ANAC58    --------->At4g35610 --------------------->TaNAC69(2)                  <---------TOE2(3)<---------ARR11(3)<----------DOF2 ------>CCA1(2)                          <---------TOE2(3)<---------ZAT6       <---------ICU4       <   agatgagtgataccacgtttctcaagagactcttcaagacgttgaggcaaactaagtttagagatagcgagttcttcaccatcatcagcttcaacgttgt  9288600             <---------ARR11(3)        --------->WRKY18(1)        <------NtERF2       <---------RAP2.6(3)       <-----------HVH21       ------>NtERF2      --------->DEAR3(1)      --------->RAP2.3(3)     <------NtERF2                                                                       --------->At4g35610     --------->RAP2.3(1)                                   --------->ZAT14               <---------At4g35610     --------->ATERF1(1)         ---------->DOF2           <---------ZAT14              ------->GAMYB    ------>NtERF2 --------->ARR14(2)                 --------->HSFC1(2)                 ----------->RAV1(1)    <---------RAP2.3(1)     <-----------HVH21        <---------HSFC1(2)                --------->MYB46(3) ------------>WRI1<---------ARR14(2)              ---------->DOF2                    ----------->RAV1(1) -----------RAV1(1)   <-----------TGA1       <----------DOF2                  <------ZmHOX2a(1)   tgttgtcgccgtcaaggtcatattcgtcatggtcagaaagaccaagacttttgaaagcttcttcactgagaacagaattaggagtagcaacagcagaagg  9288700                      ----------->HVH21               <---------ZAT14                            <---                    --------->CCA1(2)          --------->DAG2                 ----------->GT1    <---                   <---------ARR14(2)         --------->MYB52(1)            ---------->DOF2    <-----                   --------->ARR14(2)        --------->CCA1(2) <---------ANAC58               <------             <------ZmHOX2a(1)             --------->CCA1(2)   <---------ANAC58  --------->CCA1(2)   aacaagaagagaagaggaatggatacgacgagttctacgaacaagagataagggagtgaagaaaggcttatcgagagataaagataaacaattagacctc  9288800                                                                  ------>NtERF2                                                                 --------->ANAC58                                                                 --------->ANAC58                                                                 --------->ANAC46                                                               <---------ATERF1(1)                                                              <---------DEAR3(1)                                                              --------->DEAR3(1)                                                              <---------ETT(2)                                                              --------->ETT(2)                                                              --------->WRKY12                                                            <-----------HVH21                                                          --------->DEAR3(2)         <---------ANAC58       --------->ARR14(2)       ------>MYB83         <---------ANAC58       --------->ARR11(3)       ------>MYB46(1) ------DAG2                     <---------ARR14(2)       -------->P -------DOF2                   <------ZmHOX2a(1)   --------->GLK1(1) ----------AGL15           --------->ALFIN1        <---------GLK1(1)                   --------->At4g35610 -----------AGL3   --------->GLK1(1)    <---------ZAT14 ------>ZmHOX2a(1)<---------ANAC46           <   tttttggaattgggtttggagatttcaaggtgaggaacttggtatagtgatggaactcctaccgtcgacgccattttgtggagatagtaagctcgacgga  9288900                                                                            --------->LBD16                          --------->DAG2                                 ------>MYB46(1)       ------                          <---------TOE2(3)                              ------>MYB83 <----------DOF2                          <---------TOE1(3)                           <---------HSFB2a(1)      <-----                    <------ZmHOX2a(1)                                 --------->HSFB2a(1)   <--------     <------ZmHOX2a(1)  --------->CCA1(2)                      <----------DOF2       <---------ANAC58 ------ZmHOX2a(1)  ----------->GT1              <---------TOE2(3)   <-----------GT1  <---------ANAC58   gaggagaggagaagagaaggaaggagataaggtttgagagttgagagagtgaggtttttgaaaggctttgtaaccttccacgattttgcttctctgcttc  9289000                        <---------ATHB12            --------->AHL20(2)                                <------------CBF      <----------DOF2  --------->ANAC46                      --------->ATHB12      *TSS  <---------AHL20(2)                              <---------MYB52(1)     --------->YAB1    --------->ANAC58                    <-------GAMYB                       <-----  <---------CCA1(2)    --------->ANAC58       <---------GLK1(2)            <---------AHL20(2)  <----- --->At4g35610       --------->ZAT6     --------->RVE1(1)  <---------RAP2.6(3)      <-------TEIL<---- ----At4g35610    <-----------GT1----------->GT1          <---------MYB46(3)    --------->MYB59<----- -At4g35610<---------AHL20(2)   <---------TOE2(3)     --------->ZAT18  <---------YAB1 <------------CBF   tgccctatctttatttatttctaccactcaagttgatgtaaaatatcagattttagtgggccgttattgggctatgtttatttaggtccattgtatggct  9289100         <---------GLK1(2)          --------->ATHB12                       --------->YAB1       <---------YAB1              <------ZmHOX2a(2)                 --------->AHL20(2) <---------YAB1                    <---------YAB1                    <---------AHL20(2) ----ANAC58                 --------->ATHB12                     <---------RVE1(1) ----ANAC46                --------->ICU4                        <---------CCA1(1) ------DOF2        <---------At4g35610                          <---------ARR11(3) ----ANAC58        --------->At4g35610                          --------->ARR11(3)   --------------->AtSPL8   tttattattctgattctgggcttctggccatgtttggatcattggaggtatggatatagttatagagatatttattttcatattttggatgtactagtct  9289200                                                   <---------ICU4                                                   -------->HAHB4                                                   --------->ATHB12                                                   <---------AHL20(2)         <---------YAB1                                                   -------->ATHB1        -------->ATHB1                                                   --------->ATHB51      <---------ICU4                                                  <---------YAB1         --------->YAB1                                                  --------->ICU4         --------->ATHB12                                                  <---------ATHB51      <---------ATHB12                                                <---------ICU4          --------->ICU4                      --------->ZAT6            --------->YAB1          <---------YAB1                 ------>ZmHOX2a(1)             <---------YAB1       <---------MYB52(1)                --------->TOE2(3)   <---------ALFIN1               --------->TOE2(3)         <-----------GT1     <<<<<<<<<<GT-3b   --------->ICU4     ----------->GT1   caatctcattctcaccctccttaaacactatttttcttccaccttgttgataattattgaactaaatctcgttaatcattgttatttagaaatctatcga  9289300                                 <---------AHL20(2)                             <---------AHL20(2)                                                <-----                            <---------YAB1         <---------AHL20(2)                          <-----                        <---------GLK1(2)      ----------->GT1  ----------->GT1      <------ZmHOX2a(2)                 <---------AHL20(2)     <---------ATHB12   --------->ANAC46--------->DAG2   <--------                 --------->AHL20(2)<-----------GT1 --------->AHL20(2)     ---------->DOF2  <---------    <-----------HVH21   --------->ARR11(3)     <---------ZAT6 <-----------RAV1(2)   --------->ARR11(3)   --------->WOX13(1)   <---------ARR11(3)<----------DOF2 --------->MYB46(3)        <---------ARR11(3)   taaatccatcaccgaaaatttaaatagatttttattttttcaatctttagtgttaaattatccaccaggtaaaatgaaaagtagaagatcattttaactt  9289400                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                       --------->ATHB12                                                                --------->ZAT18                                                                <---------ZAT18                                                         --------->AtMYB61  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  <-------GAMYB <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  --------->At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                  <---------At4g35610 --------->MYB46(3)                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxx                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           xxxxxxxxxxx                                             <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            xxxxxxxxxxx                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <-----------GT1xx                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  xxxxxxxxxxxxxxxxxxx <----------DOF2           <-----------RAV1(1)------------>AtMYB77<xxxxxxxxxxxxxxxxsmallRNA(i)     xx ----DAG2            <-----------GT1       ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------ -----DOF2          <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------MYB52(1)xxxxxxxxxx ---GT1        <---------ICU4 <---------MYB46(3) <---------MYB46(3)--------->MYB46(3)    xxxxxxxxxxxx --GT1    --------->AHL20(2)<-------GAMYB<---------YAB1----------->RAV1(1) <---------MYB46(3) -------   tttctttcaaaaaaaaatcattttaacttctgttgttgaaattgtgaaaggcagttgcaccacaagtccacaaccattggttagagataccatactacaa  9289500  Previous    Next  AGI:  At5g26742.1    Description:  EMB1138 (EMBRYO DEFECTIVE 1138); ATP binding / ATP-dependent helicase. Identical to DEAD-box ATP-dependent RNA helicase 3 (RH3) [Arabidopsis Thaliana] (GB:Q8L7S8;GB:O65255;GB:Q0WMJ9;GB:Q8LPE9;GB:Q8RUW1;GB:Q9SB96); similar to PMH2 (PUTATIVE MITOCHONDRIAL RNA HELICASE 2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G22330.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77581.1); similar to Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago truncatula] (GB:ABD32851.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17315.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); conta Range:  from: 9285085    to: 9289006    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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