Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <---------ZAT6                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                 --------->ANAC58      <---------TOE1(2)           <-                                                 --------->ANAC58    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     <----------DOF2                                               <---------ALFIN1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <---------ANAC58       ----------->RAV1(1)    --------->TOE2(1)  ==============                      <---------ANAC58      <----------ID1          --------->TOE1(1) <---------ANAC58                     <------NtERF2          --------->ANAC46       <---------------AtSPL3  <---------                   <---------ANAC46       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   --------->ALFIN1 --------->LBD16      <---------MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(i)  <-------TEIL   <---------MYB46(3)<---------LBD16   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ========== <--------P     --------->ALFIN1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s) -------TOE2(3) <---------AtMYB61 <---------LBD16<---------ALFIN1  ------>ZmHOX2a(1)  <---------ANAC58   gaggttgattcggagatagtggtggggtttctcaagaccgggataagcgacacacatcccttgtttttcctagtacgtttgtgttatggctttctttcga  9275600                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           <---------ARR14(2)                          <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <-------MYC3                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       ------->MYC3                  <--------P                     ------->MYC3                    xxxxxxxxxxxxxxxx>smallRNA(s)                     <-------MYC3               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   --------                    ==========================================MYC_MYB  <-----------GT1       <-------                    --------->TGA1a         --------->TOE2(3)      ------->TEIL      --------->CCA1(2)            <xxxxxxxxxxxxxxxxsmallRNA(i) --------->YAB1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)---   <---------ZAT14  <---------TGA1a      <---------ICU4  <---------MYB59             --------->GLK1(1) -----ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->At4g35610         <---------GLK1(2) =============================bZIP_DOF   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ARR14(2) -DOF2    <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ATHB12<---------At4g35610         <---------ARR14(2) =============================bZIP_DOF <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxx   aggactggagagtccaaatcacacatgtgtatagggaggctaatcatcttaatgggttagctaactatgcattttcccttccttcagatttgcattttta  9275700                                                                  <---------ZAT6                                                              --------->REM1(2)          ------------>AtMYB77                               <---------ANAC46         ----------->HVH21                                  --------->LBD16         ----------->TGA1                                 <---------LBD16       <---------ANAC58                                 --------->ARR14(2)       --------->bZIP60(1)                              ------->TEIL       <---------bZIP60(2)                              <---------ARR14(2)                         --       <---------ANAC58                               <---------ZAT14                              <-       <---------ANAC46                               --------->REM1(2)                            --       <---------bZIP60(1)                xxxxxxxxxxxxxxxx>smallRNA(s)                             <- ------YAB1                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <----------DOF2  xxx ->AHL20(2)                    <---------At4g35610    --------->ZAT14           <---------ICU4  ----- --AHL20(2) <---------ANAC46   --------->At4g35610    <---------ZAT18  <----------DOF2        ------- ------>ATHB12     ---------->ID1----------->HVH21 <---------ANAC46 <---------ARR11(3)      <-------- xsmallRNA(le3)<---------MYB52(1)----------->TGA1 <---------DEAR3(1)--------->ARR11(3) <---------At4g35610   tgatttatgtcgtgacggtttgtcgtcttgtttatctgacgatgctcgaggggctgtgtacccgcgtagagttcttttgtaatcttttcttctgctttta  9275800                                               <---------AHL20(2)                                               --------->AHL20(2)                                               --------->YAB1                                            <--------ATHB1                                            -------->HAHB4                                            <---------ICU4                                            --------->YAB1                                            --------->ATHB51                                            <--------HAHB4                                           <---------YAB1                                           --------->AHL20(2) ------->AHL20(1)                          <---------ATHB51                                         - --------AHL20(1)                       --------->AHL20(2)                                         <- ------->AHL20(2)                   --------->AHL20(2)                                             <- --------AHL20(2)          <---------DAG2--------->YAB1                                            -- xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------AHL20(2)                  ------->GAMYB        -------- ---->YAB1                 <----------DOF2 --------->ICU4            --------->MYB52(1)   --------->AHL20(2) -->AHL20(2)            <---------ALFIN1<---------AHL20(2)           ----------->RAV1(1)  --------->YAB1 --DOF2               <---------ALFIN1 --------->AHL20(2)    ---------->DOF2         ------------>CBF   ataaatttgtaaggggcattaccccctcactttaccaaaaaattaataattaaaactctcttataaagaaacaacagaagattagaaaacaattaaaaag  9275900                   <---------ARR11(3)                   --------->ARR11(3)              <---------AHL20(2)              ----------->TBP              --------->AHL20(2)            ----------->TBP           --------->AHL20(1)           <---------AHL20(1)          --------->AHL20(2) ---------->GT1   --------->CCA1(1) --------KAN4(2)  --------->RVE1(1) --------------AtSPL8               ----------->TBP                                     ------>ZmHOX2a(1) ------------->AtSPL8        <-------TEIL         *TSS                      --------->AHL20(2)      < -->DOF2--------->AHL20(2)----------->TBP<-------TEIL------->TEIL           <---------AHL20(2)<<<<<<<   gaatgtacaaaaatatataaatatctctatatacatctatatatacatatatatgtatgtataggtctctgtgcatatttatatcgtctcctcttcttct  9276000                            --------->ARR14(2)                 <---------CCA1(2)                            <---------GLK1(2)                <---------ANAC58                            <---------ARR14(2)               <---------ANAC58                           ------>MYB46(1)         <----------DOF2                  --------->ARR14(2)             <---------At4g35610                            -----                  <-----------ARR10  --------->LBD16      <-------TEIL              <---------TOE1(3)        <---------DAG2     ------>MYB83          --------->At4g35610                <---------TOE2(3) ---------CCA1(2) <---------ARR14(2)<---------ANAC46 <-----------RAV1(2)           ---------->DOF2 <<TBF1 <----------DOF2  <---------MYB59 <-----------GT1<---------GLK1(2)      <----------DOF2  -----   tcgtctctcacttttcagcgtttctgaccaaattctctccgtgtttccttctgcttcaggttcgcgtttctctcaatgtctcttttaaagtttcttaaaa  9276100                                                                                    <---------ANAC58                                                                                    <---------ANAC46                                                                                    <---------ANAC58            <---------ANAC58                                                 <-----------GT1            <---------ANAC58                <----------DOF2          <---------ANAC58          <-----------GT1             <---------ANAC58     <---------ICU4  ------>ZmHOX2a(2)        -       <---------ICU4                 <---------ANAC58    <---------YAB1 --------->ARR11(3)         - ---->ARR11(3)     ------->TEIL  <-------MYC3             --------->ICU4 <---------ARR11(3)  <------- ---->GLK1(2)--------->TOE2(2)   ------->MYC3     <-------TEIL       <---------ANAC58       <--------   tctgtctgaaaattacctgtgaatctcagaaaacatgtgttcttgtctttgattcatgtcattatcccaatgcttgatcttacatttcgtctaatcttta  9276200           <-------TEIL    ------>ZmHOX2a(2)   <------ZmHOX2a(2)                      --------->ARR14(2)  --------->AGP1                          <---------ARR14(2)  --------->ARR11(3)                   <---------WOX13(1)  <---------AGP1      <-----------------AGL3  <---------ARR11(3)  =============================================================================== <---------CCA1(2)    <-----------------AGL2------>ZmHOX2a(2) ---------->ARR10    <---------At4g35610  ------->TEIL -------->MYB59      <---------ZAT2 --------->ICU4     <---------AHL20(2) ---DOF2  --------->ARR14(1) <---------ANAC46         --------->AHL20(2) -ICU4   <---------GLK1(2)  <---------LBD16<------ZmHOX2a(2)                         <----------DOF2   gttagatcttagattcgttctccagctaattctgggtattgatggatccaatttgattttataaaaaaacttgatgaaatttgtttcctttgttcattgt  9276300                    <---------TOE2(3)                 <---------YAB1                                                      <------ZmHOX2a(2)              <---------YAB1                                                        --------->ARR11(3)             ==========================================================================MADS_MADS             <-----------------AGL3                                               --------->ICU4             ------>ZmHOX2a(2)                                                  ---------->DOF2            <------ZmHOX2a(2)                              <---------WOX13(1)----------->GT1            <---------At4g35610                      ------>ZmHOX2a(2)       <------MYB46(1)           --------->ARR14(2)                       <------ZmHOX2a(2)        <------MYB83           <---------AGP1                          --------->AGP1           --------->MYB59           <---------ARR14(2)                      --------->ARR14(2)    --------->ARR14(2)           <-----------ARR10                       <---------ARR11(3)    <---------ARR14(2)      ----          <---------CCA1(2)                        --------->ARR11(3)<-----------------AG       <----          <---------ARR14(1)    ------>ZmHOX2a(2)  <---------AGP1 <---------AtMYB61 <---------ARR11(3) ==============================MADS_MADS           <---------ARR14(2)<-----------------AGL1   <------   tcttcttacatcggatctgattatggatttttgatctacatgtttagcatttagatctgtaattgattttggtcgaatttggtaaagatcacatttttac  9276400                                                <-----------GT1                                  <---                                      ------>ZmHOX2a(2)                                         <----                                     <---------At4g35610                                        <----                                     <------ZmHOX2a(2)                                     ------>ZmHOX2a(2)                                    <---------ARR14(2)                                    <------ZmHOX2a(2)                                    --------->ARR14(2)                                    --------->CCA1(2)                                    <---------AGP1                                       --------->ARR14(2)                                    <-----------ARR10                                    <---------ARR14(2)                                   <---------CCA1(2)       <---------At5g28300           <---------ARR11(3) ----->ATHB12                    --------->ETT(1)         <-----------GT1                --------->ARR11(3) -----YAB1                    <-----------RAV1(1)<-------TEIL   ----------->GT1          --------->AGP1 -----GT1            <---------MYB52(1)    ------>ZmHOX2a(2) <-----------RAV1(1)         <---------AGP1   gattgaatttttccaaagttttcgttttttttttgtcggatctgatctatatacgttttgttactgttgttatatatgcttagcatttttagatctgtgc  9276500  Previous    Next  AGI:  At5g26642.1    Description:  transposable element gene. similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] (GB:ABE88250.1); similar to RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] (GB:ABE81893.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 9274547    to: 9275782    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g26667.1    Description:  uridylate kinase / uridine monophosphate kinase / UMP kinase (PYR6). Identical to Uridylate kinase (PYR6) [Arabidopsis Thaliana] (GB:O04905); similar to uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative [Arabidopsis thaliana] (TAIR:AT3G60180.2); similar to uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative [Arabidopsis thaliana] (TAIR:AT3G60180.1); similar to unknown [Populus trichocarpa] (GB:ABK96210.1); contains InterPro domain Adenylate kinase; (InterPro:IPR000850); contains InterPro domain Adenylate/cytidine kinase, N-terminal; (InterPro:IPR011769); contains Range:  from: 9275950    to: 9277974    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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