Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------ALFIN1                                         ------>ZmHOX2a(1)                             --------->AtMYB61                                    <---------ARR14(2)                            --------->MYB46(3)                                    --------->ARR14(2)                           <---------At5g28300     <---------AHL20(2)         <------NtERF2                       <----------DOF2       ------>MYB83                   <---------DEAR3(1)                   ---------->ID1            ------>MYB46(1)                --------->ETT(1)             --------->ARR11(3)  --------->At4g35610     <---------GLK1(2)<-----------HVH21             <---------ARR11(3) --------->DEAR3(1)--------->AHL20(2)     <---------MYB46(3)         ---------->DOF2  <-----------GT1   ----------->RAV1(1)<---------AtLEC2 --------->HSFC1(2)  -    ------->TEIL<----------DOF2 <---------ALFIN1  <---------AHL20(2)    --------->ALFIN1<---------ALFIN1   tttacgaatttgaaaggtcttttcccttttaccaccgctccagcaccaacatttaaattgattctgcatcgcaagtggtcggagcatcctccagcctcga  9391700                                                                                                 ----                                                                                      <---------TOE1(2)                                                                                      <----------DOF2                          --------->ANAC58                                <------ZmHOX2a(2)      ----              --------->LBD16      <---------YAB1                        <---------ARR11(3)      ----            <---------LBD16      --------->YAB1               <----------DOF2        <---------ANAC58      --------->YAB1      --------->ANAC58                <---------GLK1(2)          <---------ANAC58 -------->ANAC46 ---------->DOF2<---------ATHB12--------->GLK1(2)        --------->ARR11(3) <--------   acacactataagaacgcggaaaagactgaagccaaacatcattcaccaagactctgtctagcttctttgctattagatcattttctcgcttgtttgacca  9391800                                                                                        --------->GLK1(1)                                                                                       <---------GLK1(2)                                                                                       <---------ARR14(2)                                                                                       <-----------ARR10                                                                                       --------->ARR14(2)                                                                                     --------->LBD16         --------->SPL7                                                            <---------At4g35610        ------>NtERF2                                                              <---------LBD16       --------->ZAT18                                                          ----------->HVH21   --------->DAG2                                                              <-----------TGA1  ---------->DOF2                                                             <---------bZIP60(1) ------->GT1                                                                  --------->bZIP60(1) ----->ANAC58   --------->CCA1(2)   <---------ZAT14                     ------>ZmHOX2a(1) ----->ANAC58  <---------ARR11(3)   --------->ZAT14  --------------------->WRI1<-----------HVH21 -WRKY18(1)  <---------YAB1  <---------ZAT6   <---------At5g28300       <-----------RAV1(1)   agtaaaaagcggaccatgatatgctaaatcagtgatagagcagtgattcacagccatttgaaagtctcgcattcctgttgtcgtcaccggattttctctc  9391900                 <-----------HVH21                                                            -------       <---------ZAT14                                                                  ------>ZmHOX2a(2)       <---------ZAT18                                                                  =============       --------->ZAT18          <---------AHL20(2)                       <------ZmHOX2a(1)    -------       --------->ZAT14          --------->AHL20(2)                       ======================HOX2a_HOX2a    <---------ANAC58    --------->GLK1(2)        <---------YAB1 ----------->GT1       <---------ARR11(3)    <---------ANAC58   <---------GLK1(2)    --------->YAB1    <---------LBD16         --------->ARR11(3)   gagttggagtgctcttccatgtcaagaatctcattaaaatcaccaaaaattatccatggtttactacggataataggagagtcagagtgatctctcaagt  9392000                                                                             ------>MYB83                                                                             ------>MYB46(1)                         ---------->DOF2                                   --------->DEAR3(1)                    ------>ZmHOX2a(1)                                      --------->MYB46(3)                    <---------------AGL15                                 --------->ANAC46              <---------ANAC58                                    <---------AHL20(2)           <-----              <---------ANAC58                   --------->At4g35610    <-----------GT1       -------           ------>ZmHOX2a(1)                --------->MYB52(1)  <----------DOF2               <------ -->ANAC58<---------ANAC58                 --------->TOE1(2)    --------->TOE2(3)     <---------YAB1 =================HOX2a_HOX2a       --------->YAB1 ----------->GT1--------->AHL20(2) *TSS--------->At4g35610 -->ANAC58<---------ANAC58--------->DAG2  --------->MYB46(3)    --------------------->WRI1 --------->WRKY38(1)   cattccatagttccttacgttcctccataaagtttgaagcataaacaaacgagcagaaaaattcttctttaatttcaccgaacatgttatgagttgccca  9392100                                                                                --------->ZAT6                                                                               <---------ZAT14                                                                      --------->ATHB51              -      --------->MYB52(1)                                              <---------ICU4                - ----ALFIN1                                                          <---------YAB1       <---------ATHB12 -->ZAT18   --------->ANAC58                 --------->ARR14(2)      --------->ICU4      ------>MYB83 ---ZAT18   --------->ANAC58<<<<<<<<<TBF1    <---------ARR14(2)    --------->YAB1        ------>MYB46(1)   ctcttaaaaaacggacgcagtctcacattcttcttccatactacccaaatacgacctcttgtactatgctcataatttgtcaacactgaccaatctttga  9392200                                                                    --------->GLK1(2)                                                              ----------->GT1                                                           --------->MYB52(1)                                          <---------CCA1(2)------>MYB83                                        --------->TGA1a  --------->AtMYB61                                        =========================MYC_MYB                                        <---------ANAC58 <---------MYB59    ==============================================bZIP_DOF ------>MYB46(1)    <---------At5g28300                 --------->O2     ------->GAMYB    ---------->DOF2                     <---------ANAC58--------->MYB46(3)   <-----------GT1              ------>ZmHOX2a(1)      --------->ANAC58 -------->ANAC58               --------->TOE2(3)       --------->ANAC58                   <-------TEIL -------->ANAC58               --------->TOE1(3)     --------->MYB46(3)           --------->YAB1   acaagttacagcccaaactctgagcccttctctccttaactcgcgtctctatcaaacaaccaaactgaaaattctgttcttctattatcacatacacata  9392300                                   --------->ARR11(3)                                   --------->AHL20(1)                        --------->ALFIN1                   ---------->DOF2                      <---------ANAC46        --------->AHL20(2)                ----------->HVH21  <---------AHL20(1)    --------->YAB1             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <-----------GT1            --------->ZAT2        <---------AHL20(2)--------->ANAC55(2)                  --------->ANAC55(2)            <---------ZAT2 ----------->GT1    <---------AHL20(2)                        <---------TOE2(3)         ---------->DOF2<---------ANAC46     <---------AHL20(1)            ==========================        --------->YAB1<---------ANAC58       --------->AHL20(2)            ==========================     --------->YAB1   <---------ANAC58       <---------AHL20(2)            ------>ZmHOX2a(1)    <---------YAB1 <---------AtMYB61   <-----------GT1  <---------YAB1    --------->TOE2(3)   tatactataatcaaagctgtgatggtgtgtggataaatattttgcaatttttttacttatcaaaagttctatttttcctaaaactgtatttaggtgattt  9392400                                          --------->ATHB51                                         <---------YAB1                                        <---------AHL20(2)                                        --------->AHL20(2)                                        <---------AHL20(1)               <-----------GT1         --------->YAB1           <---------ZAT6           <---------ICU4     ------>ZmHOX2a(2)              --------->YAB1    <------ZmHOX2a(2)              <---------YAB1    --------->GLK1(1)              --------->ICU4                                   --------->ATHB12   <---------ARR11(3)           <---------AHL20(2)                                 <---------YAB1   --------->ARR11(3)           --------->AHL20(2)                               <---------ICU4  <---------GLK1(1)             <---------YAB1                                   --------->YAB1  --------->GLK1(1)          --------->AHL20(1)                               --------->YAB1 ===========HOX2a_HOX2a      <---------AHL20(1)                          <---------AHL20(2) ==========HOX2a_HOX2a ----------->GT1<---------YAB1              --------->ZAT6<---------YAB1  -----   acagagatctctagtattatctatatagttatatattattattataattgaaatactaaaaactactagcactattttttttataatgactgagggtcta  9392500                                    --------->AHL20(2)                                    <---------AHL20(2)                                 ------>MYB83                                 ------>MYB46(1)                      <---------AHL20(2)                               <---------MYB59                        --------->AHL20(2)     <---------------AGL15     <---------MYB46(2)                    --------->AHL20(2)   ----------------->AGL3      <---------MYB111(1)             ----------->GT1                 <-----   ------>ZmHOX2a(2)           --------->TOE2(3)        ----------->GT1   --------->AHL20(2)  <------ ---->MYB52(1)           <-----------GT1         ---------->DOF2    <---------YAB1         --------->ICU4   actgatccaaaatttggaagaaaaaattttctacctaattttttggagcccaaaagaatgggaaaatgttattaaaaaaaatcgacctaggcactgatta  9392600  Previous    Next  AGI:  At5g26582.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.1e-42 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 9388759    to: 9392085    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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