Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <---------AHL20(2)                                                                              <---------AHL20(2)                                                                              --------->AHL20(2)                                                                              <---------AHL20(1)                                                                              --------->AHL20(1)                               --------->DAG2                       --------->SPL7                              ---------->DOF2                     <---------SPL7                            --------------->AGL15                <---------ANAC58 --------->YAB1          <-----------GT1                         <---------ANAC58 <-----------GT1     <----------DOF2                            --------------->AtSPL3 --->TOE2(3)         <---------DAG2       <-----------GT1      <-----------HVH21        --------->YAB1 ----GT1    <---------ATHB12<---------------AGL15     ---------->DOF2      --------->YAB1        ----   taatcacattttcaatcgattagctttttactaaaagtagtttttaacaatgtgccaaaagacgctgtcgtaccctaaaataaaattgaatgaaaataag  9219700                                 <---------AHL20(2)                                 --------->AHL20(2)                              --------->WOX13(1)                                              <------                --------->MYB52(1)                                                            -------   --------->At4g35610      --------->MYB46(3)                                               --------   <---------At4g35610     -------->P  <-----------HVH21   <----------DOF2          <---------YAB1  --------->GLK1(2)       --------->WOX13(1)         <---------GLK1(2)             <-----------GT1 ------>DOF2    <-----------GT1 <---------ATHB12<----------DOF2       <---------YAB1<---------TOE2(3)   aaagaagctgaaacagattaactgttatcaaccaattaatctgtcactcactttagaatttctttattgtttcttattcagtttttaacattgtctctaa  9219800         <---------AHL20(2)         <---------YAB1        --------->AHL20(2)                             ----------->GT1        <---------AHL20(2)                             --------->TOE2(3)--------->ARR11(3)       --------->YAB1                                 ----------->GT1   <---------ARR11(3)   <------ZmHOX2a(1)                         <---------AHL20(2)        --------->CCA1(1) <---------TOE1(3)                           --------->AHL20(1)        --------->RVE1(1) <---------TOE2(3)                           --------->AHL20(2)    --------->AHL20(2) ---------AGL15                             --------->AHL20(2)<----------ID1 -------->AGL15                        --------->AHL20(2)     ----------->GT1 --------->ANAC58 --------->AGL3    ---------->ID1      <---------AHL20(2)   ---------->DOF2   --------->ANAC58  <----   attaaggaattttaattgtttgtttttttcaaaaaacaaaattaaaaaaaattgaaatgttaaaaagaaaaaaatatctcaagaaaaacttttgaatact  9219900                                                                                                    -                                                                                                    <                                                                                                  <--                                                                                        <---------AHL20(2)                                                                         <---------ARR11(1)      <---                                                                         ------->TEIL <---------AHL20(2)                                                            <------ZmHOX2a(1)       <---------AHL20(2)                                 <---------AHL20(2)      --------->At4g35610       <---------AHL20(1)                                <---------AHL20(1)       <---------At4g35610       <---------ARR11(3)                             --------->CCA1(2)           <------NtERF2   --------->ARR14(2)      <---                            --------->ARR11(3)  <---------HSFB2a(2)      --------->GLK1(2)      -----                            <---------ARR11(3)  --------->HSFB2a(2)      <---------ARR14(2)     <----                        ---------->DOF2         <-----------RAV1(2)      <-----------ARR10      <----                 <---------TOE2(3)          <-----------HVH21 --------->GLK1(1)    --------->ARR11(3) ------DOF2      <---------YAB1 --------->AHL20(1)    --------->ZAT18   <---------ARR14(1)      -----   tttgtaatagttttttcttaagataaaaaagatatatatttctctaggtcccagagggcagaggaactcaaaacgaatcttggtatatatttttttttgt  9220000    <-----------ARR10    <---------ARR14(2)    --------->GLK1(2)                                                                           <----    --------->ARR14(2)                                                                         <-----    ------->TEIL                                                                              <------    <---------ARR11(1)                             ----------->GT1                        --------->KAN4(2) --------->ANAC58                               <---------ANAC58                         --------->HSFC1(2) --------->ANAC58                          --------->ARR11(3)                       --------->HSFB2a(2) -------->SPL7                             <---------ARR11(3)                       <---------HSFB2a(2) ---------TOE1(2)                          <---------ICU4                           ------>ZmHOX2a(1) -------SPL7                               <---------AHL20(1)                       --------->LBD16 ------ANAC58    <---------AHL20(2)   <---------AHL20(2)                           <---------LBD16 ------ANAC58   <---------YAB1        --------->AHL20(2)    *TSS                  ----------->RAV1(2) ---------->AtSPL8            <---------ICU4    <---------ANAC58         <---------ANAC58--------->HSFB2a(1) -----------AtSPL8           --------->ICU4--------->AHL20(1)            <---------ANAC58<---------HSFC1(2) -----------AtSPL3           <---------ATHB12 <---------AHL20(2)      <---------CCA1(2)  <---------HSFB2a(1) ---------->AtSPL3<------------CBF<---------AHL20(2)       <------------CBF       <---------LBD16   cgtacgaatcttggtatatttattgtatgaaatcattttttttaatattttcttggttaaatattgaaactcatttcttgtttctcctggaaaattccgt  9220100      ----------->HVH21                       ----------->GT1                        <---------ANAC55(2)   <------ZmHOX2a(1)                        --------->ARR11(3)        --------->ATHB12  ---------->DOF2 -----MYB52(1)                   --------->AtMYB61           <---------GLK1(2)    --------->ARR14(2) --GAMYB                        --------->MYB46(3)          --------->ZAT2        <---------ARR14(2) ---ANAC46        ------>ZmHOX2a(1)       <---------YAB1    <---------ZAT2   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   tgataggactgacaagagtcctgagagaagagcgaccatcgagtaagatagtgacaataaccagcttctccttgattaagggcaaatatgtaaagggtat  9220200                                                                                    <---------ARR11(3)          <---------ZAT14                                                       <---------ANAC58          --------->ZAT14                                                       <---------ANAC55(2)         ----------->RAV1(1)                                                    <---------ANAC58        --------->ANAC46              <---------YAB1                            --------->ANAC55(2)      --------->ANAC46            --------->KAN4(2)                      <------NtERF2------>ZmHOX2a(2)  <------ZmHOX2a(2)    <---------ANAC46                                <---------ANAC46 --------->ARR11(3)    <---------ANAC58           --------->MYB52(1)   --------->ETT(1) <---------ARR11(3)    <---------ANAC58    --------->YAB1           <-----------RAV1(1)       -------   agagatcaacacaacacagagaattgcttataagtatattcttattgataacaaactgtttacaaatgttatgtcggagattacttgatctattctaccc  9220300                                                              ------->MYC3                                                              <-------MYC3                                                             --------->TGA1a                                                             --------->ANAC55(2)         <xxxxxxxxxxx                                                             <---------ANAC55(2)       <xxxxxxxxxxxxx                                                             <---------ANAC46          xxxxxxxxxxxxxx                                                             <---------TGA1a           <xxxxxxxxxxxxx                                                             ========================================                                                             --------->O2             <xxxxxxxxxxxxxx                                                             <---------O2            --------->ANAC58                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <--                                                    <---------YAB1                   --------->ANAC46   <------ZmHOX2a(2) --------->ARR11(3)         <---------ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ARR11(3) <---------ARR11(3)         <---------ANAC58--------->REM1(2)    --------->ANAC58 -->ANAC46           <-----------ARR10 <---------CCA1(2) <-----------HVH21   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   aagagatcaaaaccgagtaagaatatctaagcctaattctcttatctgtttcttatcactgtcacgtgaagactaagagaattacacactcaccttcaag  9220400                                                          <---------ALFIN1                                                         ----------->HVH21                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                --------->ANAC46                                                --------->ANAC58                --------->ARR11(3)              --------->ANAC58                <---------ARR11(3)           <---------ZAT18      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ZAT18                                      --- xxxxxxxxxsmallRNA(si3)                      --------->ZAT14  --------->ANAC46                    --- xxxxxxxsmallRNA(i2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           --- xxxxxxxxx>smallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxx xxxxxxxxxxsmallRNA(s2)      ----------->GT1 <---------ZAT14--------->ZAT6xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ========bZIP_DOF           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ZAT18xxxxxxxxxxxx xxxxxxxxxsmallRNA(si3) --------->YAB1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <-----------GT1 --------DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------YAB1 <----   cttttgcaatgctctgaagatttcaatcgtatcgaaatattctagagtgcacgaagcgcctcacactaaaccctagagtacttatacttactctccataa  9220500            ------>ZmHOX2a(2)           <---------GLK1(1)           =============================HOX2a_HOX2a           --------->GLK1(1)                                                                  <------           <------ZmHOX2a(2)                                                                  -------          --------->ARR11(3)                                                                  <------          <---------ARR11(3)                                                                  -------       ------>MYB83 --------->GLK1(2)                                                --------->ARR11(3)       ------>MYB46(1)                                                              <---------GLK1(1)     --------->TOE1(2)             --------->GLK1(2)                               <---------ARR11(3)     xxxxxxxxxxxxxxxx>smallRNA(i) <---------GLK1(2)                          --------->HSFB2a(2)     --------->TOE2(2)           <------ZmHOX2a(1)                     --------->ARR11(3)     <------ ------>TOE1(3)     <---------ARR11(3)                                 <---------ARR11(3)     <------ ------>TOE2(3)     --------->ARR11(3)<----------DOF2                 <---------CCA1(2)      <------- ------>YAB1============================HOX2a_HOX2a                 ------>ZmHOX2a(1)<---------ARR11(3) xxxxxxxxxxxxxxxxxsmallRNA(se3)<---------TOE1(3)                   --------->TOE2(3)--------->GLK1(1) xxxxxxxxxx>smallRNA(se3)  <----------DOF2                 --------->KAN4(2) <---------HSFB2a(2) -----ARR11(3)  --------->LBD16<---------TOE2(3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tcttaaacctacgatctccgaaaatctcgttttaaggaatcttttttgttttcttcaagcttattccttcctaaatcttcgagatgatatcttccatatc  9220600  Previous    Next  AGI:  At5g26286.1    Description:  pseudogene, hypothetical protein Range:  from: 9220060    to: 9221661    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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