Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                   <x                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          xx                     --------->ATHB12                                                         -------                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                       -------                  xxxxxxxxxxxxxxxx>smallRNA(i)                                   <xxxxxxxxxxxxxxxxxxx               xxxxxxxxxxxxxxxx>smallRNA(s)                                      xxxxxxxxxxxxxxxxxxxx             xxxxxxxxxxxxxxxx>smallRNA(i)                                       <xxxxxxxxxxxxxxxxxxxx            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxx>smallRNA(i)          xxxxxxxxxxxxxxxx>smallRNA(s)                                         xxxxxxxxxxxxxxxxxxxxxx         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         xxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         xxxxxxxxxxxxxxxx>smallRNA(i)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------ANAC58         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <----------DOF2            <------      <---------ANAC58       --------->MYB52(2)       <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <---------AHL20(2)   <---------ANAC46     <-------    <---------ANAC46<---------ATHB12               <---------AHL20(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   xxxxxxxxxxxxxxxxxxx>smallRNA(le3)              --------->AHL20(2)  <---------ANAC46     xxxxxxxxxx   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------YAB1   <---------ANAC58      xxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------YAB1<---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxx ->GT1<---------ANAC46      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ANAC58   xxxxxxxxxxxxxxxx   tatgttttgggtgaattgttcaatgactggtttgtttgtattgtattcgtgattatatttttttatttgcttttgtgtatagctcgtagatgggagaatc  9189100                                                                                                   <-                                                                                                   <x                                                                                                   <x                                                                                                   <x                                                                                                  <xx                                                                                                 <xxx                                                                                         xxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    --------->ANAC58                                                                                    xxxxxxxxxxxxxxxxx                                                                                    --------->ANAC58<                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                            --------->ATHB12    <xxx xxxxxxxxxxxxxxxxsmallRNA(i)                                                 <---------ICU4     <xxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        --------->YAB1   <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        --------->ICU4  <xxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -->GLK1(2)                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -->ARR14(2)  <---------YAB1                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxsmallRNA(se3)                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxx>smallRNA(se3)                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxsmallRNA(le3)  --------->YAB1                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) x>smallRNA(fl3) <---------YAB1                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<x ---ARR14(2)--------->YAB1                              --------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --GLK1(2) --------->ICU4                          --------->At5g28300xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxx>smallRNA(se3)                         ----------->GT1<---------YAB1xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx>smallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(i) x>smallRNA(i2)--------->YAB1         <-----------RAV1(1)   --------->DAG2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxx>smallRNA(si3)<---------ANAC55(2)<---------MYB46(3)---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   gcctcactaagtatttatgataatacttaagcatcttattgtgttgttgatgcagtaaaaataaagtgtgattgtggaatcatggcaaggaagagaggat  9189200                                                       >>>>>>>>>ARR2                                                       >>>>>>>>>ARR2                                                       >>>>>>>>>ARR1                                                       >>>>>>>>>ARR1                                                      ====================================HOX2a_HOX2a                                                      <------ZmHOX2a(1)             --------->MYB52(2)                   <--------P            <---------TOE1(2)                     <---------MYB52(1)           <---------MYB52(1)                   --------->LBD16<---------MYB52(1)    <xxxxxxxxxxxxxxxxsmallRNA(s)               xxxxxxxxxxxxxxxx>smallRNA(i)    <------ZmHOX2a(1)                         <---------LBD16 <-------GAMYB <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------REM1(1)                              xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxx>smallRNA(i2)                     <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(s) xxxsmallRNA(s)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxsmallRNA(fl3)                    xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxsmallRNA(fl3)                     <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxsmallRNA(fl3)                        xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxsmallRNA(se3)                    xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxx>smallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxsmallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(s) xxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxx>smallRNA(i2)                    xxxxxxxxxxxxxxxx>smallRNA(i) xxxx>smallRNA(fl3)                  --------->ATHB12<---------YAB1 xxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxx>smallRNA(i) xxsmallRNA(le3)                     xxxxxxxxxxxxxxxx>smallRNA(s) <---------YAB1                ----- xxsmallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       <---- >smallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <----- xsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       --------- >smallRNA(i2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        <-------- xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <---------AHL20(2) xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   --------->AHL20(2) xxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->ATHB51 x>smallRNA(se3)         <---------ANAC46<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      ------>ZmHOX2a(2)-   gatgtaggaactcgtttgttttatgttttgtgtttttggttattggaacccggttaggattgtctgttatttttggttttgttgatcgaattatttattt  9189300                                       <---------AHL20(2)                                  <---------YAB1                                <---------AHL20(2)                                --------->YAB1                                  <---------AHL20(2)                                -------->ATHB1                                  --------->AHL20(2)                                -------->HAHB4                      --------->YAB1  <---------AHL20(2)                                <--------HAHB4                      --------->AHL20(2)  <---------AHL20(2)                                --------->ATHB51                    <---------AHL20(2)<---------AHL20(2)                                <---------ICU4              <---------AHL20(2)<---------AHL20(2)                               <---------ATHB51             --------->AHL20(2)--------->AHL20(2)    <---------AHL20(2)         --------->ICU4            <---------AHL20(2) <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------AHL20(2)  --------->AHL20(2)   --------->AHL20(2)       <---------AHL20(2)      <---------AHL20(2)    <---------AHL20(2) ---->AHL20(2)              --------->AHL20(2)      --------->AHL20(2)  --------->AHL20(2) -----AHL20(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->AHL20(2) --------->AHL20(1) ----AHL20(2)             <----------DOF2     <---------WOX13(1)<---------AHL20(2) <---------AHL20(1) >AHL20(2)             <---------RAP2.6(2)  <---------MYB46(3) --------->AHL20(2) <---------AHL20(2) -AHL20(2)            <---------LBD16<---------YAB1--------->AHL20(2)   <---------AHL20(2)      <---- -------->YAB1  <---------YAB1 <---------YAB1 <--------P--------->AHL20(2)--------->AHL20(2)    -----   atttataaaatagtatttctgatttgcggtttaattattatgttattggttgatttaattaaatatttaattatatatatatatatatattttttttttt  9189400                        --------->ARR11(3)                        <---------ARR11(3)                       <---------GLK1(1)                       --------->RVE1(1)                       --------->CCA1(1)                       <---------RVE1(1)                       --------->GLK1(1)          <---------MYB46(3)           <---------LBD16    <---------ICU4         <--------P   --------->ARR11(3)      <---------At4g35610           --------->AHL20(2) -----AHL20(2)        <---------ARR11(3)      --------->At4g35610         ----------->GT1         --- ---->AHL20(2)    ---------->DOF2 --------->ICU4       --------->YAB1   ---------->DOF2  --------->AHL20(2)   aaatgggtctggttgtttcacaaagatatctgagtcatatttggggaatgctgacattaatactttcgataacaaaaagaaaatacactcattaaacaga  9189500                              ----------->RAV1(1)                           *TSS                  --------->AHL20(2)                  <---------AHL20(2)                      <-----------GT1                 --------->AHL20(2)                     <----------DOF2              <---------GLK1(2) --------->ANAC46       <---------ANAC58   --------->TOE1(3)  --------->AHL20(2)       --------->ARR11(3)          <---------CCA1(2)   --------->TOE2(3)  <---------AHL20(2)     <---------TOE2(3)     <xxxxxxxxxxxxxxxxsmallRNA(i) ------>MYB46(3) <---------AHL20(2)     ------->TEIL   <---------ANAC58  --------->ANAC46   acaaacctcagaaacagaatttaattaaaaacccacaaaatgaatctaagatagtttgctttacaattcaaaaacccgtctctgtgattcaaaatcccta  9189600                                                                           <---------ANAC46                                                                           --------->TGA1a                                                     --------->GLK1(2)     <---------ANAC58                                          <---------ARR14(2)               <---------ANAC58                                          --------->MYB52(1)     ------>MYB46(1)                                          --------->ARR14(2)     ====================MYC_MYB                                       --------->HSFB2a(2)       -------->P--------->O2                                       <---------HSFB2a(2)       ------>MYB83         <---------ARR14(2)                    --------->YAB1 --------->At4g35610         <---------MYB59        --------->ARR14(2)       <------ZmHOX2a(2)         --------->YAB1      <---------ARR14(2)    <---------O2     --------->GLK1(1)          <---------ATHB12  ------>ZmHOX2a(2)        <---------TGA1a   --------  --------->LBD16  <------ZmHOX2a(2)  <---------LBD16--------->ARR14(2)    ==========================   aatccagagatcgaactctcgatcatgttatcgaatcatctccagaacgggatcgaatccgataacctactctggtctcgtgtccctgaatccgatgata  9189700               --------->ZAT6             <-----------GT1               <---------ANAC46         <---------ARR11(3)             ----------->HVH21    --------->DREB2C(2)                 ----------->TGA1    --------->DEAR3(1)                 <-----------HVH21    ------->GAMYB                    <---------ANAC46    --------->At1g77200           ----------->TGA1   --------->MYB46(3)             ----------->HVH21   --------->DEAR3(2)            <-----------HVH21                                   <---------YAB1 ->YAB1  --------->ARR11(3)   <---------At5g28300----------->GT1             --------->HSFB2a(2) ===========MYC_MYB --------->ANAC46 <---------DEAR3(1)                      <---------HSFB2a(2)   cttccaccgacgatattactctactcaactctcaccgtgacggtgacggaggtgtcaatagtctcgattacgaagtcatcgagaattacgcttatagaga  9189800                             <-------GAMYB                            --------->MYB52(2)                            <------MYB46(1)                                     <---------ANAC58                            <------MYB83                                        <---------ANAC58                            <---------MYB46(3)                             ------>ZmHOX2a(2)                        <-----------RAV1(1)                              --------->ARR14(2)   <<<<<<<                    <----------DOF2                                      <---------ARR14(2)<<<<<<<<<TBF1                    <---------DAG2                                   <---------LBD16  xxxxxxxxxxxxxxx               ---------->DOF2                               --------->ZAT14 <---------MYB52(1)              <------ZmHOX2a(1)            <-----------HVH21<----------DOF2--------------->AtSPL3<<<<   agaacaagctcatcgaggaaagctttatgttggttactacgttgctgtcaaatggttcttctctttactcatcgggatcggtacttgttgttcttcttct  9189900                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                                ==============================HOX2a_HOX2a                 <---------ANAC58         --------->GLK1(2)                 <---------ANAC58         <---------ARR14(2)                 <---------ANAC46         --------->ARR14(2)             <-------GAMYB               <---------GLK1(2)             <---------ANAC58          --------->LBD16             <---------ANAC58         <---------HSFB2a(2)            <------MYB83              --------->HSFC1(1)                             --------->ZAT2            --------->MYB52(2)        --------->HSFB2a(2)                            --------->At4g35610            <------MYB46(1)          <---------LBD16                                 <---------At4g35610            --------->MYB55(2)  --------->ARR14(2)                                <---------At4g35610            <---------MYB46(3)  <---------ARR14(2)                                --------->At4g35610        <-----------RAV1(1)     --------->ARR11(3)                      --------->ARR14(2)    <---------ATHB51            <---------GLK1(2)=============================HOX2a_HOX2a    <---------YAB1              <---------ARR11(3)                      <---------ARR14(2) <<TBF1<---------YAB1         <---------TOE2(2)--------->ARR14(2)      <------ZmHOX2a(1) x>smallRNA(i)<--------P      <---------TOE1(2)--------->ARR11(3)    <---------TOE1(2)           ---- <<<<<TBF1 <---------AtMYB61  ----------->ARR10<---------ARR14(2)    <---------TOE2(2) <---------ANAC46   tcttcgattattgttggttgcttacttcttcgtagattttccagaatccgatcttgtttttgatttcttcgtaggaactggattagctgctgtgttcatc  9190000  Previous    Next  AGI:  At5g26240.1    Description:  CLC-D (chloride channel D); anion channel/ voltage-gated chloride channel. Identical to Chloride channel protein CLC-d (CLC-D) [Arabidopsis Thaliana] (GB:P92943;GB:O81491); similar to CLC-C (chloride channel C), anion channel/ voltage-gated chloride channel [Arabidopsis thaliana] (TAIR:AT5G49890.1); similar to hypothetical protein OsJ_011718 [Oryza sativa (japonica cultivar-group)] (GB:EAZ28235.1); similar to Chloride channel protein CLC-d, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98345.1); similar to putative CLC-d chloride channel protein [Oryza sativa (japonica cultivar-group)] (GB:AAO19370.1); contains InterPro Range:  from: 9189527    to: 9194734    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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