Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <---------AHL20(2)                                                                                         <---------AHL20(2)                                                                                         <---------AHL20(1)                                                                                         --------->AHL20(2)                                                                                      <---------AHL20(2)                                                                                     --------->AHL20(2)                                                                                     <---------AHL20(1)                                                                                     --------->AHL20(1)                                                                                     <---------AHL20(2)                    ------->GAMYB                                                <---------AHL20(2)           <---------HSFC1(2)                                                    --------->AHL20(2)           --------->HSFB2a(1)                                                  <---------AHL20(1)           --------->HSFC1(2)                                                   <---------AHL20(2)       ----------->GT1                                                      <---------AHL20(2)       --------->ANAC58       <---------YAB1                                --------->AHL20(2) ---->AHL20(2)     <---------ALFIN1                                        --------->AHL20(2) ->TOE2(3) <---------HSFB2a(1)--------->ICU4                       <---------ZAT14  --------->AHL20(2) -->GT1--------->ANAC58    --------->ICU4                      <-----------GT1  --------->AHL20(2)   aaattcggcacgaaaattccaacacactagtgattattttgcaactaatttccacaatcttctatttactatacttatttaataaaattaattttttttg  9164300                              <---------ATHB12                         --------->ANAC46                         --------->ANAC58                         --------->ANAC58                     --------->AHL20(2)                  <---------ICU4                 --------->ICU4                 --------->AHL20(2)  --------->ANAC58                 <---------AHL20(2)  --------->ANAC58                 <---------ATHB51    <---------ANAC55(2)          <---------SPL7           <------ZmHOX2a(1)             --------->AHL20(2)      --------->ANAC55(2)<---------WOX13(1)              <---------LBD16             <---------AHL20(2)      --------->ANAC46  <---------ANAC58                 <-----------RAV1(2)             <---------AHL20(1)  <---------ANAC58      <---------ANAC58       <---------ZAT2             --------->AHL20(1)  <---------ANAC58    <---------MYB46(3)       --------->ZAT2         <---------YAB1---------->DOF2             <---------MYB52(1)       ------>ZmHOX2a(1)    ------>MYB83<---------AHL20(1)<---------SPL7  --------->LBD16 --------->ZAT14  <---------ARR11(3)    ------>MYB46(1)  <---------AHL20(2)         <---------LBD16   <---------ZAT18 <------ZmHOX2a(1)   aacaccaaattctaataaaataattaaaagcaatgacttacgcaaatagctccggtggattgctccagcgtacaagtcctagcaggatgttcaggagtac  9164400             --------->ANAC55(1)             --------->ANAC58             --------->ANAC46             --------->ANAC58               --------->ANAC58      <---------ICU4                    --------->ANAC58     <---------YAB1                     --------->ANAC46               ----------->RAV1(1)    <------   --------->YAB1            --------->YAB1 --------->ANAC58       --------->MYB46(3)      <---------YAB1  <---------YAB1      ---------->DOF2   --------->ANAC58   <---------ATHB12              ----------->GT1   ctctatgatcaatacacgctacaaaaaagaataagaaaacataagcaaacaatttgattcaatctttcaacaacaacaaaaaaacaatgtgttgttatta  9164500                                                                                 ---------->DOF2                                                                               <------ZmHOX2a(2)                                                                              <---------ARR11(3)                                                                              --------->AGP1                                                                   --------->TOE1(2)                                                                   <---------LBD16         --------->ARR14(2)                                           <---------ATHB12        --------->TOE2(2)       <---------ARR14(2)                              ------>ZmHOX2a(1)                   ----------->RAV1(2)     <---------CCA1(2)                   <-------MYC3        --------->MYB46(3)    --------->YAB1<---------HSFB2a(2)   ---- ---YAB1           ------->MYC3      <-----------GT1   --------->YAB1      --------->HSFB2a(2)   <---   tacatacctagatcgaagacacgtttatagtccttgatataaccaatgagtttttcatcaaaatcaaaacctgggttccagatcaaagaaccatatccaa  9164600                                     --------->ANAC58                                     --------->ANAC46                                 --------->ANAC58                                 --------->ANAC46                         XXXXXXXXXXXXXXXXXXXX>MIR403              <----------DOF2    --------->ANAC58    --------->ANAC46  ------>ZmHOX2a(1)                                                 *TSS  --------->ANAC46   --------->TOE1(3)         <----------DOF2                         ---------->DOF2 ----->ARR14(2)      --------->TOE2(3)      --------->GLK1(2)             ----------->GT1     ------- ------ARR14(2)     ------>ZmHOX2a(2)--------->ANAC58            >>>>>>>>>TBF1 <---------RVE1(1)   atacccacaaaaccatctttgatccttagcctcacacacaaacaacaatctttagagaaaatgagaagaagaaagaatgtgatatttttgaaagaagtgg  9164700                                                                  --------->ALFIN1                                                                <-----------RAV1(1)                                                     --------->ARR14(2)      --------->ATHB12                                         ----------->GT1        --------->ALFIN1              <---------AHL20(1)       <---------ANAC46         <---------ANAC46    ------->TEIL              --------->ARR11(3) <---------ARR11(3)  <---------ARR14(2)      <---------ICU4           <---------AHL20(2)    --------->ARR11(3)  <---------GLK1(1)      <---------ATHB12   <-----     ----------->GT1    ----------->GT1<---------ANAC58   --------->LBD16   <---------YAB1 <---------RAP2.6(2)   <------------CBF   ----------->GT1  <---------ANAC58  --------->LBD16    --------->ICU4--------->RAP2.6(3) -->ALFIN1 --------->AHL20(2)    <---------GLK1(2)  <---------GLK1(2)      <---------TOE2(3)   <-----   gagagaattgtattaatatatacagagtgaaaaaagattttgggtgtaaaaatagaatcccgagatgtgtgggagttaatgatttgaatctagacggctt  9164800                                              ------>ZmHOX2a(2)                                              ====================HOX2a_HOX2a                                             =====================HOX2a_HOX2a                                             <------ZmHOX2a(2)                                            --------->ARR14(2)                                            --------->ARR11(3)                                            <---------ARR11(3)                                            <---------ARR14(2)                        <----------DOF2                            --------->RAP2.6(3) ------>ZmHOX2a(1)                  <-----------GT1        <-----------GT1<-------TEIL        --------->GLK1(1)             --------->ANAC58 <---------TOE2(3) --------------->AtSPL3  <---------GLK1(1)           --------->MYB52(1)    <------- <---------TOE1(3)<---------At5g28300---------->DOF2          --------->ZAT6   <----------DOF2 ----DAG2        <-----------GT1    <---------AHL20(2)    <---------MYB59--------->ANAC58    <------- -----DOF2       ------------------>SPL14 ----------->ARR10------>ZmHOX2a(1)------->TEIL  <----------DOF2   tttgaggtttatacattttttaccgtacatttcggcatttaaagcagatcctactctcttcctaactctaatctaacgcatcttttttctttctttcttg  9164900                                                    <---------------AGL15                                                    <---------MYB59                                                    --------------->AGL15                                                   ----------------->AGL2                                                   ----------------->AG                                                   ----------------->AGL3                                                   ----------------->AGL1                                          <---------YAB1                                        --------->YAB1                              <---------DAG2       <---------ANAC55(2)                              <----------DOF2    <-----------GT1                       --------->ANAC58 <---------ICU4                       --------->ANAC58--------->ICU4 ------>MYB46(1)                       --------->ANAC46<---------YAB1 ------>MYB83 --ANAC58            --------->YAB1 <---------YAB1 --------->ANAC55(2)                              - --ANAC58   <-------TEIL     <---------DAG2  <---------YAB1               ----------->RAV1(1)       -   tttttagtttgtgatacattgaatcaagacacctttttgttattattattcttacctaatagagacagaaatggtccaacatagcataagtcttagccca  9165000                                                                     <---------MYB46(3)                                                                     <------MYB46(1)                                                                     <------MYB83                                                                    <---------DEAR3(1)                                                                    --------->MYB111(2)                                                                    <---------AtMYB61                                                                    <---------MYB46(3)                                                                    --------->MYB111(1)                                                                    --------->MYB46(2)                                                                    --------->MYB55(2)                                                                   <--------P                                                                  <---------ANAC58         <-----------GT1                                          <---------ANAC58                 --    <-------MYC3                       ---------->DOF2           --------->ATHB12                  <-    ------->MYC3         <---------RVE1(1)                       --------->MYB55(2)                --  <---------TOE2(2)      <---------CCA1(1)                       <---------MYB46(3)               ---  <---------TOE1(2)     <---------ARR11(3)               <---------AHL20(2)                     ----- <---------ALFIN1       --------->ARR11(3)               --------->AHL20(2)      --------->DAG2 <---- -------->TOE2(2)      <------ZmHOX2a(1)               <----------DOF2         ---------->DOF2 <----- -------->TOE1(2)  <--------P<---------AHL20(2)      ---------->ID1<---------MYB55(1)          <-----   aacccacgttttttcattctggttaggatatttttttgggtaaaagtcaaattttgtctttaaatattggttggtggaaacaaaagggagatggagagga  9165100        ----------->RAV1(1) ------->ZAT14                                           <---------ARR14(2)               --------->ANAC46 --------ZAT14                                           --------->ARR14(2)      <---------WOX13(1) ------->ZAT18                                      <------MYB83               --------->ATHB12 ------>ALFIN1 --------->ZAT18        <----------DOF2 <---------ANAC46        --------->ICU4 ---->ALFIN1   <---------ZAT18 <---------ARR11(3)   <------MYB46(1)       <---------TOE2(3)        <- -----ANAC46   --------->ZAT14 --------->ARR11(3)   <---------ANAC46  <---------ICU4     <---------HSFB2a(2) ------------------TaNAC69(2) --------->RVE1(1)    <---------AtMYB61 --------->ICU4      --------->HSFB2a(2) -ZmHOX2a(1)   <---------ZAT14--------->CCA1(1)--------->ATHB12------->TEIL   <---------YAB1---------   gtggacagagccacaagtgcacaactctcaaaatatctatcttttttgttgatttggtgtatatggatgtaatgttgacgatgattggctactcgaaaga  9165200  Previous    Next  AGI:  At5g26220.1    Description:  ChaC-like family protein. similar to ChaC-like family protein [Arabidopsis thaliana] (TAIR:AT4G31290.1); similar to ChaC-like family protein-like [Solanum tuberosum] (GB:ABB87104.1); similar to meloidogyne-induced giant cell protein-like protein [Solanum tuberosum] (GB:ABA46779.1); contains InterPro domain ChaC-like protein (InterPro:IPR006840) Range:  from: 9162972    to: 9164688    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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