Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <---------MYB59    <---------GLK1(2)                 <---------At4g35610                            --------->ARR11(3) ---->LBD16                --------->DAG2     ----------->GT1                        <-----------ARR10 ---LBD16     <----------DOF2    <---------ZAT6                         --------->AtLEC2    <-------- >DOF2   <<<<<<<<<TBF1    ---------->DOF2 --------->ARR11(3)       <-----------GT1   <---------ARR11(3)   gagtcatattcttcttcttttttatacaaaaagtattgttagatgatatagaaatatgttttagtgtatatactatgcaaattgcaatatctaactttga  9148800                                                                                    --------->ALFIN1                                                                                  --------->O2                                                                                  <---------O2                                                                                  <---------TGA1a                                                                         <---------ANAC55(2)                                                                         --------->ANAC55(2)   ------                                                                       <-----------GT1         <-----                                                                   --------->AHL20(1)          ------                                                                   <---------AHL20(1)      --------->At5g28300                                          =======================HOX2a_HOX2a      --------->TGA1a                                          <------ZmHOX2a(1)        --------->AHL20(2)     <---------ANAC46                           <---------ARR14(2)                      <---------AHL20(2)     -----------                           --------->ARR14(2)     --------->ATHB12--------->AHL20(2)----------->HVH21 --DOF2      <---------MYB52(1)          --------->ICU4   <------ZmHOX2a(2)    ------>ZmHOX2a(2)   aacaattctcaagacgttgtttcaaaacatatacacttatgtaaggattgagtcattgagatcgatgaataaattacatgatcgacgtgatgctgtgaat  9148900                                                       <---------YAB1            <---------ALFIN1                         --------->YAB1         <-----------GT1                             <---------ICU4    <---------YAB1                                   <--------HAHB4  <---------CCA1(1)                                 --------->ICU4 <---------ARR11(3)                                 <---------ATHB12 --------->ARR11(3)                                 <---------YAB1 --->GLK1(2)--------->AtMYB61              <-------GAMYB ----ARR14(2)                      ------->TEIL--------->ANAC55(2)                           -------- ->TEIL  --------->ANAC46       <---------YAB1 <---------ANAC55(2)                      ----------->GT1 >GT1  <-----------GT1     <---------ZAT6 <---------MYB46(3)                     ----------->GT1   ctagatattatacaccactcttcttgtttgtgttatgaatttgatggttatgtaatcatttttgaaatactgacttaacaagattgaaaaatgtaataag  9149000                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                  ------>ZmHOX2a(2)                                                                --------->ARR14(3)                                                                <---------ARR11(3)                                                                --------->ARR14(2)                                                                --------->ARR11(3)                                               --------->GLK1(2)<---------ARR14(2)                                               --------->ARR14(2) ----------->GT1                                               <---------ARR14(2)<------ZmHOX2a(2)        <---------ETT(2)                ================================HOX2a_HOX2a               ---     <---------REM1(1)                  =================================HOX2a_HOX2a        <-------- ->ICU4 --------->ETT(2)  --------->YAB1<------ZmHOX2a(1)       <---------ARR14(3)          <--------   tcgatagatgtagacatttggaaaactctcataaaaactcaaggacacaaatctgaaactgaacaagatcgtgatactgaacatgccaacatgggcttga  9149100                                                                                       ---------->DOF2                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                                  <---------ANAC46                                                         --------->LBD16         --------->ABI4(2)                            ----------->GT1   ================HOX2a_HOX2a        <-------TEIL                   ----------->GT1            <------ZmHOX2a(1)             <---------------------WRI1 ------>MYB46(3) --------->LBD16         <----------DOF2 ----------->GT1   --------->MYB52(1) -ANAC58       <---------LBD16   <------------CBF      ------>ZmHOX2a(2)  --------->ARR14(2) -ANAC58      ------->TEIL  <---------ANAC55(2)        <---------LBD16    <---------ARR14(2)   accacaatttgttgtgaaccggagtaaaatatgtaaattggtgctataggaatttgatccggtttaactgaaaccgaaaacggtgcgtttaaagtcacca  9149200                                                                     --------->MYB46(3)                                                               <------NtERF2        <---------At4g35610                                                             <------NtERF2          --------->At4g35610                                                            ------>NtERF2           ------>NtERF2                                                           <---------ANAC58        --------->DEAR3(1)                                                           <---------ANAC46        <---------DEAR3(1)                                                           <---------ANAC58        --------->RAP2.3(2)                                                          --------->ATERF1(1)     --------->ATERF1(1)                                                          <------NtERF2           --------->DEAR4(2)                                                        <---------DEAR3(1)        <------NtERF2                                                        --------->ALFIN1          --------->RAP2.3(1)                                                        <---------RRTF1(3)   --------->DAG2                                                        <---------RAP2.3(3) ---------->DOF2        <-        --------->DAG2                             --------->YAB1    <---------MYB52(2)----------->GT1       ---------->DOF2        *TSS                <---------YAB1----------->GT1  <---------RAP2.3(1)<   agacgaagaaaaagggttttagtttttgtgaggggagagagactgagaggttatcatggtggcgcgtcgtaacaaaccaaaagcgccgctggtgaaacac  9149300             <------NtERF2            ----------->RAV1(1)            ------>NtERF2           --------->DEAR3(1)           --------->ETT(2)           ----------->HVH21          --------->RRTF1(1)          --------->RAP2.3(1)          --------->ATERF1(1)          <------NtERF2         <---------ORA47(2)         <---------ERF1         <---------RAP2.3(1)         <---------DEAR4(2)         ------>NtERF2         <---------RAP2.6(1)         <---------RRTF1(1)         <---------ATERF1(1)        --------->ATERF1(2)        <---------DEAR3(1)        --------->DEAR3(1)        <---------RAP2.3(2)        <---------ATERF1(2)        <---------RAP2.3(3)       <---------ABI4(1)                                                ----------->RAV1(1)       --------->ATERF1(1)           --------->DEAR3(1)         <------NtERF2      ------>NtERF2                  --------->DREB2C(2)       ------>NtERF2      <---------ATERF1(1)          --------->MYB52(1)         <---------DEAR3(1)      --------->LBD16             <---------ALFIN1            --------->DEAR3(1)                    -      <---------RAP2.3(1)         --------->DEAR3(1)          <---------ANAC46                      -     <---------RAP2.3(2)          --------->AtMYB61         --------->LBD16                       ---     <---------RAP2.6(2)         <---------MYB55(2)        <---------RAP2.6(2)               --------     <---------LBD16             --------->MYB46(3)        <---------LBD16                   --------    <---------LBD16            --------->AtMYB61          <---------LBD16 <---------ALFIN1  --------- --------GLK1(2)              --------->MYB46(3)  -------->P------>NtERF2 <---------MYB52(2)--------- ----------DOF2          --------->AtMYB61      --------->MYB46(3)--------->HSFB2a(2)       ---------   cgattttccggcggcgacagtcacaaaccaaaaccaccaccggctactaaacaaccattttccggcgtcgagagccacaaaccaaaaacatcaccagcta  9149400                                               <------NtERF2                                              ------>NtERF2            ------>NtERF2                                              --------->LBD16         --------->DEAR3(1)                                             --------->LBD16         <------NtERF2                                             <---------ANAC46        --------->ATERF1(1)                                            <---------LBD16         ------>NtERF2                                            <------NtERF2           <---------ATERF1(1)                                            --------->ATERF1(1)     <---------RAP2.3(1)                                           --------->ABI4(1)       --------->DEAR3(1)                                           <---------ATERF1(1)     --------->RAP2.3(2)                                           ------>NtERF2           <---------DEAR3(1)                                          <---------ATERF1(2)     --------->RAP2.6(1)                                          <---------DEAR3(1)      --------->RAP2.3(1)                  <------NtERF2           --------->RAP2.3(2)     --------->ATERF1(1)                 ------>NtERF2            --------->DEAR3(1)      --------->RRTF1(1)    ---------->DOF2                       --------->RAP2.3(3)     --------->ERF1                  <-- -------->ANAC58--------->DEAR3(1)       --------->ATERF1(1)     ------>NtERF2                    --- -------->ANAC58<---------DEAR3(1)       --------->RRTF1(1)      <---------ATERF1(1)             ---- ------->DOF2   <---------ANAC46         --------->ERF1          --------->LBD16                 ---- ->ZAT2       --------->LBD16            --------->RAP2.3(1)     <---------RAP2.3(1)             ---- ->At4g35610  ------>NtERF2              --------->ORA47(2)     <---------RAP2.3(2)             ----- >ANAC46     <---------RAP2.6(2)         --------->DEAR4(2)     --------->ANAC46              ------- >ANAC58     <---------LBD16           --------->ANAC46        <---------LBD16               -------- >ANAC58    <---------LBD16          ---------->DOF2  --------->MYB52(1)                  --------->ANAC46   caaagcaaaagttttccggcgtcgagagtcacaaaccaaaaacgccgccgggaaaacaacgattttccggcgccgagagtcgcaaaccaaaaacaccacc  9149500                                                                                              ------>NtERF2                                                                                             --------                                                                                            <--------                                                                                            <------NtERF2                                                                                          <---------ANAC46                                                                                          <---------bZIP60(1)                                             <-----------RAV1(2)                         --------->ATERF1(1)         ---------->DOF2                   ------>NtERF2                                <---------ATERF1(1)     --------->ANAC58                     --------->ANAC58                             ----------->HVH21     --------->ANAC58             --------->ZAT2                                    --------->ALFIN1 -------At4g35610              <------ZmHOX2a(2)                                   --------->LBD16 ------>At4g35610             --------->ARR11(3)                         --------->SPL7----------->TGA1 ----->ANAC58                 <---------ARR11(3)                       <---------SPL1(2)<---------TGA2(2) ----->ANAC46                <---------GLK1(1)                         <---------SPL7--------->REM1(2) ----->ANAC58       --------->At4g35610   --------->ANAC46           --------------->AtSPL8------>NtERF2 ---->MYB46(3)      <---------ZAT2--------->At4g35610         ----------->ARR10   <---------ANAC46 ---->RAV1(1)       <---------At4g35610   --------->ANAC58<---------At4g35610    <---------LBD16 ->AtMYB61          --------->ZAT2<---------At4g35610     --------->At4g35610<---------MYB52(1)  ----   agctactaagcaaaagttttccagcttagagagatcagctctctacgccagaagagaagcagctaatatactccgtaccgttctccgtggtgacgccgag  9149600                                                   ------->GAMYB                                                  --------->MYB46(3)                                                  <---------MYB55(2)                                                  <---------MYB52(2)                                                 <--------------OsCBT                                                ----------->RAV1(1)                                             --------->ANAC58          <---------ANAC46                   --------->ANAC58          <---------ANAC58                  --------->SPL7          <---------ANAC58                 <---------MYB52(1) <----------DOF2     <---------MYB46(3)                   <---------SPL7--------->ANAC46                     ------->TEIL ->DEAR3(1)                              <---------ANAC58  <---------ALFIN1                  <------- --CDC5<---------MYB52(1)                <---------ANAC58 <------NtERF2                   ----------- ------->HVH21       <---------ATHB12 ------>ZmHOX2a(1)<---------LBD16      <---------------------WRI1   cgacgagccgttgcttccatcaaatcactcgtcttaagtccttccgttcgcaacaaacgcggcactttcgctcttgtctgcgagactctcaaatgtaact  9149700  Previous    Next  AGI:  At5g26180.1    Description:  NOL1/NOP2/sun family protein. similar to nucleolar protein, putative [Arabidopsis thaliana] (TAIR:AT5G55920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43844.1); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678) Range:  from: 9149230    to: 9153505    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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