Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->WOX13(1)                 <------ZmHOX2a(2)                               --------->GLK1(1)                <---------ARR11(3)                            --------->LBD16       --------------->AGL15                                 <---------HSFB2a(2)--------->ANAC58       --------->ZAT6<---------ATHB12                        --------->HSFB2a(2)--------->ANAC58      ----------------->AGL3                               ------>ZmHOX2a(1)    --------->ANAC46  --- --------------->AtSPL8                             <----------DOF2    ----------->RAV1(2)        <-- <---------------AtSPL3                            <---------ANAC58    <---------At4g35610       ---- ---->MYB46(1)  --------->ARR11(3)                 <---------ANAC58    --------->At4g35610   -------- ---->MYB83 ---------->DOF2                  --------->MYB46(3) --------->ARR14(2) --------->ARR11(3)   caaatagtaccactaaaagatcaatctttgaagcttcaagaggctcaacaattgctttctcctccagaaacccatctgaaacaaggaacttgcaaactct  9101200                                                                                                    <                                                                                      ------>MYB83 <-                                  --------->YAB1                                      ------>MYB46(1) <---------ALFIN1                --------->ICU4                                      ----------->RAV1(1) ------>ANAC46              --------->ANAC46    --------->TOE2(3)                    --------->MYB52(1) ---------------AGL1   <---------ATERF1(1)--------->TOE2(3)                      <---------WRKY18(1)- ---->P             <---------ANAC58    <-----------ARR10   ------>MYB83<-----------GT1 ------->GAMYB ->ZAT6             <---------ANAC58   <---------CCA1(2)    ------>MYB46(1)    <---------WOX13(1)  <-   accccacttggaagaatcaaatgggtgcctacacaattatcaaatctcaacataaaaaaaccaactttcgaatttcacaagattgaccaacagagaaaat  9101300             ---------->DOF2                       --------->YAB1       <---------LBD16                            <---------YAB1                           <---------ARR14(2) ---------------AGL15                           <---------GLK1(1)                          --------->ARR14(2) ----------------AGL3                           --------->GLK1(1)                         <------ZmHOX2a(1) -------------->AGL15                          --------->ARR11(3)              --------->TOE2(3) ----------------AGL2                          <---------ARR11(3) ----------->GT1   ---------->DOF2   ttctaaaattggggaaaaagactcacaatttctcaatacccatgaacgagatatcataagacgatgaatagataatcgaaacctttgaaagaggaacgtc  9101400                                    --------->ARR11(3)                                    <---------ARR11(3)                                 <------NtERF2                               <---------DEAR3(1)                             <-----------HVH21                   --------->ARR14(2)     <---------HSFB2a(2)           <---------ZAT6   <---------O2  --------->HSFB2a(2)       --------->ARR11(3)       <---------ZAT14      --------->TGA1a           --------->DEAR3(1)       --------->ZAT18      <---------TGA1a          <------NtERF2  <---------ARR11(3)     <------ZmHOX2a(1)       --------->ZAT14      --------->O2 <---------LBD16           --------->YAB1       <-----------RAV1(2)    <---------ZAT6 <---------ARR14(2)   <---------LBD16           <---------YAB1 <-------TEIL   gaagtagagtttactgttgagaattcgctctcgtcggagagcttcgggatgagtcgccatcgaaaacgatgatatttcagaggttcgattacaggagaag  9101500                   <----------ID1                <---------WOX13(1)     --------->AHL20(2)                          <---------LBD16               <---------ANAC58      --------->ANAC58                          ----------->HVH21               <---------ANAC58      --------->ANAC58                <-----------RAV1(2)<--------P              --------->ATHB12       ----------->GT1               --------->WRKY18(1) <---------MYB52(1)             <---------YAB1  --------->REM1(2)                XXXXXXXXXXXXXXXXXXXX>MIR168A/B           <----------DOF2<---------ANAC55(2)         <---------ANAC46       <---------At4g35610 ----   agaaatttgaagactttgattgcgaaaaacgtgaagagcaagtaaatagctaagtcgcgagttaactcggtccaggtcgagatgactcgggtatgtgtca  9101600                                <-----------RAV1(1)                       <---------CCA1(1)                       <---------RVE1(1)                      --------->ARR11(3)   --------->ARR11(3)                      <---------ARR11(3)   <---------ARR11(3)                    ----------->ARR10     <---------RVE1(1)                 --------->At5g28300    <------NtERF2          ----------->HVH21<---------AHL20(2)         <----------ID1              --------->ANAC58 ----->ICU4      <-----------HVH21     *TSS<---------GLK1(2)   <----------ID1     --------->ANAC58<--   ttagtttttggtctgaagcggtgagatattttttttgttggcagagatttttgttagcgacgaagacgactaatttcaaaacgcagggaacaagcgcgtt  9101700                                                                       <---------TOE2(3)       <-----                                                                 <---------AHL20(2)            <-----                               ----------->GT1                   --------->AHL20(2)           -------                       ----------->GT1                     ----------->GT1              ---------->DOF2     <----------DOF2  --------->DAG2                      --------->DAG2      --------->MYB52(1)   <- ---------GT1        ---------->DOF2    <-----------GT1  ---------->DOF2    <---------MYB52(2)<------   tcactgactttctcttggcacaaaaaagttaaatgggaaatttgactctataaccaaaaaaaagttataaattaagaaactaacacataaaaaagagata  9101800                          <---------RVE1(1)           --------->ANAC55(2)        <---------AHL20(2)<---------CCA1(1)                             --------->AHL20(2) ----RVE1(1)             --------->ARR11(3)                             <---------AHL20(2) ----CCA1(1)             <---------ARR11(3)                     ---------->ID1                      - -->ARR11(3)     ---------->DOF2                  <---------At4g35610  --------->YAB1            ---- ----------GT1   <---------ICU4          <---------ANAC58     <-----------RAV1(1)               <---- ---ARR11(3)    --------->ICU4           <---------ANAC58   <----------DOF2                     -----   ttatctatattttatgtaataaagacagatattatctcatattgcttaagtcatcttcttctctttgttgctataaaaatatgaattggagtttttgtcc  9101900                                                                                                 <---                                                                                               <-----                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              =======                                                                                              -------                                                                                              -------                                                        ---------->DOF2                       -------             <---------ANAC55(2)                        =============================================             --------->ANAC46                         --------->REM1(2)                     <--------             --------->ANAC58                       <xxxxxxxxxxxxxxxsmallRNA(si3)          <---------REM1(2)             --------->ANAC55(2)                   <---------ANAC58                       ------>NtERF2         <-----------HVH21                         <---------ANAC46                       <---------RAP2.6(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------ANAC58                      ----------->HVH21      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->ANAC58                         --------->At1g77200 --------->DOF2                                 --------->ANAC58                         <---------ATERF1(2) ----->LBD16 --------->ANAC58                 xxxxxxxxxxxxxxxx>smallRNA(s)               <---------ETT(1) -----HSFB2a(2)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          ----------->GT1------- ---->HSFB2a(2)        <---------TOE2(3) <-----------RAV1(1)       <------ZmHOX2a(1)     --------->ANAC46   agaaaagctaatgtcacgaaattttaagtttttgacttattttttgtggcaggccgtgtaaagtctcgaggagagatagtcgagtaaattgccgacacgt  9102000    <------ZmHOX2a(1) ------ANAC46 ------HVH21 ---TGA1a -->O2 -->TGA1a ---O2 ===========================MYC_MYB                                     <---------MYB52(1) -->ANAC58           <---------MYB52(1)                <---------AHL20(2) -->ANAC46          <-------GAMYB                      --------->AHL20(2) -->bZIP60(2)      <---------ANAC58             <---------YAB1         <-------GAMYB                - ===bZIP_DOF       <---------ANAC46            <---------ARR11(3)     <---------ANAC58          ----- -ALFIN1           <---------ANAC58          --------->ICU4<-----------GT1       <---------AHL20(2)<- -->ANAC58   <---------YAB1       <---------ZAT14--------->YAB1       <---------ANAC58          <----   cgtgtaggactcactctgattccgttggggttttagtttacagagacatgatcatatttttttactccgatttcgttggggttttaatttacagagacat  9102100  Previous    Next  AGI:  At5g26040.1    Description:  HDA2 (histone deacetylase 2); histone deacetylase. Identical to Histone deacetylase 2 (HDA2) [Arabidopsis Thaliana] (GB:Q944K3;GB:Q3E940;GB:Q8LRK7;GB:Q9XH00); similar to HDA18 (histone deacetylase 18), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G61070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43792.1); similar to Os06g0571100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057914.1); contains InterPro domain Histone deacetylase superfamily (InterPro:IPR000286) Range:  from: 9099160    to: 9101639    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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