Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 <---------TOE2(3)                                                 <---------AtMYB61                                                 --------->DAG2        --------->AHL20(2)                                                 <---------TOE1(3)     --------->AHL20(1)                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              xxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxx                                <---------HSFB2a(2)  --------->ZAT18   <---------AHL20(2)                                --------->HSFB2a(2) --------->ALFIN1  --------->AHL20(2)                                <---------------AtSPL3    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         --------->AHL20(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)            <xxxxxxxxxxxxxxx                         <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->MYB46(3)                       <----------DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------------AtSPL8                       --------->TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ------->TEIL     --------->YAB1  <---------YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<---------------AtSPL3 --->ANAC58        <---------CCA1(2)--------->SPL7 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <-- --->ANAC58      <---------ANAC58--------->TOE2(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <-------- >HVH21          <---------ANAC58--------->TOE1(1)<xxxxxxxxxxxxxxxxsmallRNA(i)   <---------ZAT14  <--   gaagaattcataagtttttgcttatctttaatttctcgtactgcaaatgttaaggtggacaaattggcacaaaaaaattgtactgaaccgcttcatatca  9013700                                                   --------->At4g35610                                               <---------ARR11(3)                                               --------->ARR11(3)                                              --------->RVE1(1)                ------>ZmHOX2a(1)  --------->At4g35610                     --------->YAB1 xxxxxxx>smallRNA(fl3)    <---------ANAC58    --------->CCA1(1)          <---------AHL20(2) xxxxxxxxsmallRNA(se3)    <---------ANAC58  --------->YAB1               --------->AHL20(2) --------DOF2  --------->TOE2(3)   <---------At4g35610                  --------->YAB1 -CCA1(2)   <-----------GT1<----------DOF2  --------->AHL20(2)    ----------->GT1 -------DAG2xxxxxxxxxxxxxxxx>smallRNA(i)   <---------AHL20(2) ---------->DOF2 --------->YAB1      <--   cttttgtaaacaattttcctcagaattggcttttctgagctctaaataatatctgatgacaaaaaaaagagttatattaataagagtatatagtttaaga  9013800                                  ------------>CBF                                  ----------------->AGL3                                  ----------------->AGL2                                 ------->TEIL                                     --------->AHL20(2)                               --------->ZAT18       <-------TEIL             ----------->GT1--------                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <---------TOE2(3)-------                     --------->CCA1(2)      <------------CBF           ------->GAMYB   --------->YAB1                    <---------ARR11(3)     <<<<<<<<<RAP2.2            --------->MYB46(3)  --------->YAB1           <---------AHL20(2) --------->ANAC58      --------->CCA1(2) <---------MYB52(2)--------->AHL20(2)           --------->AHL20(2) --------->ANAC58  <---------------------WRI1  ---------->DOF2 --------- --------DOF2       --------->ARR11(3)    <---------TOE2(3)         --------->MYB52(1)--------->AHL20(2)   cttttagttatattaaaatgaagatttagagaacgcaccaattttagattggagatacaaaataagagaacaacgaactaaagttaaaataaaaataaaa  9013900                                                                                               ------                                                                                           --------->ANAC58                                                                                           --------->ANAC58                                                                                           --------->ANAC46                                                                                          ------>MYB46(1)                                                                                          ------>MYB83              --------->TOE2(3)                                                         --------->TOE1(2)            <---------TOE1(3)                                                           --------->TOE2(2)         <---------MYB46(2)                                                           -------->P         <---------MYB52(2)                                                          --------->MYB52(1)         --------->MYB46(3)                 <---------ANAC55(2)                      >>>>>>>>>>>MYB80   --------->ZAT6                           --------->ANAC55(2)                    <---------MYB52(2)  <---------ZAT18                      ----------->GT1                             <---------MYB59  --------->ZAT18                      <---------ZAT6                              <---------MYB111(1) ->YAB1  <---------MYB111(1)          <---------TOE2(3)                            <---------MYB46(2) -->AHL20(2)<---------TOE2(3)         <---------TOE1(3)                          <-----------GT1 >AHL20(2) --------->MYB52(1)  <---------YAB1          <---------At4g35610    <---------ZAT6------>NtERF2   atagaacactaactaacgttgaattttagacttatgaattagggttacttaaaattcagcccatactaggtccaaaatgagtgtaactaacctacgcctc  9014000                                                 ----------->GT1                                              <------------CBF                                             <---------ICU4                               -----------    <------NtERF2                            --------->ATHB51                          ----------->GT1    <---------At4g35610                      --------->ATHB12                     <---------YAB1   <---------DEAR3(2)                        -------->ATHB1          <------ZmHOX2a(1)<---------MYB46(3)  <---------RAP2.3(3)                       --------->AHL20(2)      --------->LBD16--------->ATHB12  <---------DEAR3(1) --------->At4g35610    <---------AHL20(2)    <---------LBD16 --------->ICU4 --------->RAP2.6(3) <---------At4g35610    <---------ATHB51      <-----------RAV1(2)<---------ANAC46 >NtERF2<----------DOF2 ------------>CBF    --------->ICU4 ---------->ID1       --------->YAB1   caagtcggctctttaaaaccttgtgctgcaattttgttttgcccaaattattggtaattttgtttttttcaggagaaaacagtgatgatgggtagaaaaa  9014100                                                                                             ========                                                                              <---------RVE1(1)                                                                             <---------ARR14(2)                                                                             <---------GLK1(2)                                                                             --------->ARR14(2)             <---------MYB52(1)                               ------>ZmHOX2a(2)         <---------At4g35610            <-------GAMYB                            <---------ATHB12       <---------At4g35610   ---           --------->MYB52(2)                  --------->ANAC58 ------>ZmHOX2a(1)       --------->At4g35610          <-------TEIL            --------->YAB1   --------->WOX13(1)   <-----------HVH21    <------- >GT1   <---------GLK1(2)  <-------TEIL        --------->ANAC58 <----------DOF2  <----------DOF2 ----   actcaaaacaggttcgttattccaataggttgatactcataaataggttaagccaattatctgatcctttgatatgtcagatactttctcatcttcccat  9014200                                                          <-----------------AGL1                                                      <---------ZAT6                                                 <---------ANAC58                                                 <---------ANAC46           --------->ANAC58                      <---------ANAC58           --------->ANAC46                <---------ARR11(3)           --------->ANAC58                --------->GLK1(2)       <-----------HVH21                   --------->ARR11(3)              <---------AHL20(1)    <-------GAMYB                          --------->ARR14(2)              <---------ARR11(3) ==========================================================================MADS_MADS ------>DAG2                               <---------ARR14(2)              --------->ARR11(3)       < --------AGL15                            --------->RVE1(1) ------>ZmHOX2a(1)               <<<<<<<<<CBP60g ------>DOF2            <-----------GT1   <---------GLK1(1)--------------->AGL15            <<<<<<<<<SARD1   aaaggaggttgtcacgacaagcgttttatccactagatggaagaatatctggcttagtgttcctagtttggaattgatatattcgatattcccaaatttc  9014300                                                            --------->YAB1                                                      --------->ANAC46              <---------AtMYB61         <---------TOE2(3)   --------->TOE2(3)        <------ZmHOX2a(1)  <-----------GT1    <---------ANAC46                           ------->TEIL   <----------DOF2    <------MYB46(1) <---------STY1(1)    <<<<<<<<<ARR2        ------->TEIL        - ---------ARR11(3)    <------MYB83    --------->STY1(1)    <<<<<<<<<ARR1  <---------YAB1<---------AtLEC2   aatacctttaggagttttggtgataggtttttcgattccactagggtttcatgtatacacaatcttaagttatattttgatgaacatgatgcatgttatc  9014400                                      --------->O2                                      --------->TGA1a                                      <---------TGA1a                                      <---------O2                                   ------->GAMYB                    --------->AHL20(2)                                   =============MYC_MYB             --------->ATHB51                          --------->ANAC58                          <---------AHL20(2)                          --------->ANAC46                         --------->ICU4                          --------->ANAC55(1)               --------->TOE1(2)         <---------MYB52(1)                          <---------ANAC55(2)              --------->MYB52(2)     ------>NtERF2  <---                          --------->ANAC55(2)              <---------ANAC58    <---------ZAT2 <------                 ===============================bZIP_DOF   <---------ANAC58    --------->ZAT2<-------         <------ZmHOX2a(2)--------->ANAC58           <---------ANAC46          <---------At4g35610 -------->REM1(1)<----------DOF2   ----------->HVH21<---------MYB52(1)         --------->At4g35610   ttacatcatggatcaatgcctttgttacacgtaacatccgacgtctatatgtccgtcgtgttcgtgggaattattttcatgagctgcccttaagccttta  9014500                                                   --------->LBD16                                                -------->ZAP1                                              <---------WRKY18(1)                                             --------->WRKY12                                             ----------->HVH21                                             --------->WRKY38(1)                                            <---------WOX13(1)      <---------ANAC58                                          <---------MYB46(3)        <---------ANAC58                                       <----------DOF2            <---------At5g28300                                   ----------->HVH21             <-----------GT1                                 <---------At4g35610           <----------DOF2                  <---- ------YAB1                 <----------DOF2<-------GAMYB   ---------->ID1             ------->TEIL ---MYB52(1)   <-----------HVH21 ----------->RAV1(2)  --------->ARR14(2)           --------->AtLEC2 ---DOF2      --------->bZIP60(1)--------->At4g35610  <---------ARR14(2)       --------->ARR11(3)   tgtttgtgagacattggtgtcactaaaactctttcatctgactttggttgaccccgaatttgtttctttaccgtgtctgaaaatcatgcatctaaactat  9014600  Previous    Next  AGI:  At5g25850.1    Description:  F-box family protein. Identical to Putative F-box/FBD/LRR-repeat protein At5g25850 [Arabidopsis Thaliana] (GB:Q3E944); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G53640.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 9014085    to: 9015920    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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