Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->ARR14(2)                                                            ------>ZmHOX2a(2)    <---------ARR14(2)                                                      <------MYB83              <---------ARR14(1)                                                      <------MYB46(1)         <---------MYB59                                                      <---------At4g35610  <-----------GT1                                                     <---------DEAR3(1)<---------TOE2(3)         <---    --------->TOE2(3)                         ----------->RAV1(1)  --------->TOE2(3)         <------- ---->GT1   <---------ALFIN1                 --------->MYB46(3)    --------->YAB1--------->GLK1(2)   aaattttcttaacaacaccttctagtttctcaaacttctccttgggaacaacagggaggtgatcgacaacgataatgttaccgaatccagtgtcgaattc  8976500                                       --------->MYB46(3)                                       <---------ATHB12            --------->At4g35610                                  --------->ANAC46               <---------ICU4                             <---------ICU4                     <---------ATHB12                             --------->ZAT6                 ------->GAMYB                            <---------YAB1                 --------->ANAC46                          <---------ICU4   ----------->RAV1(1)--------->WOX13(1)                          --------->YAB1--------->YAB1     --------->ANAC58 ------YAB1            --------->YAB1--------->WOX13(1)    --------->ANAC58                  -------- --ARR14(2)         <----------DOF2--------->MYB46(3)  <---------ATHB12                      <-------   tgactggtcatcttggtaaacactttcatcatcactacccaatcaccacagaaacaaatcaacgcaatcagttcaaaatactaagcgatttctcagattt  8976600          <---------YAB1          <---------------AGL15          --------------->AGL15       --------->GLK1(2)      <---------ARR14(2)                            =========================HOX2a_HOX2a      <---------ARR11(3)                            ============================HOX2a_HOX2a      --------->ARR14(2)                            <------ZmHOX2a(2)      <---------GLK1(2)                   <-----------GT1     --------->HSFB2a(1)              <-----------ARR10     --------->HSFC1(2)               --------->ARR11(3)              <------ZmHOX2a(1)     <---------HSFC1(2)               <---------ARR11(3)           <---------LBD16     <---------HSFB2a(1)             --------->CCA1(1)             <---------HSFB2a(2)             --    ----------->ARR10          ----------->GT1<----------DOF2      --------->HSFB2a(2)             <- ->ARR14(2)                   ----------->GT1<---------DAG2        <-----------RAV1(2)             -- --ARR14(2)       --------->At4g35610--------->RVE1(1)  ---------->DOF2  <------ZmHOX2a(1)     <-----   gaaacgaagattctaatagaagcagagatgtaatggaaaaaatctcacctttcgatcccaaagtcgtttccaggaggaagttggattgaatcgagattaa  8976700                                                          --------->ATHB12                                                         <---------YAB1                                                      <------NtERF2                                                     <---------RAP2.6(3)                                                     ------>NtERF2                                                    --------->DREB2C(2)                                                    --------->RAP2.3(2)                                                    --------->ANAC46                                                    --------->RAP2.6(2)                                                    --------->RRTF1(3)                                                    --------->DEAR3(1)                                                    --------->RRTF1(2)                                                    --------->RAP2.3(3)                                                    --------->ATERF1(2)                                                    <---------ATERF1(2)                                                   --------->ERF1                                                   --------->ATERF1(1)                                                   --------->ORA47(2)                                                   --------->DEAR4(2)                                                   --------->RAP2.3(1)                                                   --------->RAP2.6(1)                                                   --------->RRTF1(1)                                                  <---------ATERF1(1)                                                 --------->DEAR3(1)                                                 --------->ANAC46                                                 ------->GAMYB                                                <---------MYB55(2)             <---------HSFC1(2)                       <---------ZAT2           <------------AtMYB77--------->TOE2(3)                 --------->MYB52(1)             --------->DEAR3(2)--------->ARR14(2)         <---------AHL20(2)  --------->MYB59   -------->P--------->ICU4        --------->HSFC1(2)         --------->AHL20(2)<---------MYB52(1) ------->GAMYB   <---------------------WRI1        <---------ATHB12 <----------DOF2      --------->MYB55(1)  --------->GLK1(2)      --------->WOX13(1) <---------MYB46(3)  <---------MYB111(2)  <---------ARR11(1) ----------->HVH21     <---------At4g35610   <---------MYB55(2)   ------->TEIL <---------HSFB2a(1) --------->RAV1(2)     --------->At4g35610   --------->MYB46(3)  <---------CCA1(2) --------At4g35610>>>>>>>>>MYB1              <---------MYB52(2)  <---------ARR14(1) ------->At4g35610>>>>>>>>>MYB2<------ZmHOX2a(1)--------->MYB46(3)<---------ARR14(2)      <---------ATHB12 ------GT1       <<<<<<<<<<AtMYB44      <---------ARR11(3)<---------ICU4       --------->HSFB2a(1)   catctgaccaattaatccctaactgagctgttaggacatcaatatcaacaaccgccgccatgatttcgaatcttagaacgaagtttctctcaatcgatat  8976800                <---------TOE2(3)                <---------TOE1(3)                                                         <---------WOX13(1)            <----------DOF2                  --------->STY1(1)                           <-----------          <---------HSFC1(2)           <---------ANAC58                                 <---------MYB46(3)          --------->HSFC1(2)           --------->ALFIN1                 *TSS            --------->ATHB12     >>>>>>>>>TBF1 <---------ARR14(2)  <---------ANAC58              <---------ZAT6    --------->WRKY38(1) <------ZmHOX2a(1)<------ZmHOX2a(1)  --------->ALFIN1            <---------ZAT14      <---------MYB52(1)   cgaggaagaagaagctttgaggatagagagagagagagagtgtgtgcctagggttttgagttttgtttgcagtgttaagtcttaaaccgttgattgatga  8976900                          --------->ETT(1)                  ----------->HVH21   <---------ANAC55(2)                  <---------SPL7<---------MYB46(3)                 --------->TOE1(1)<-----------HVH21                <---------HSFB2a(2)   --------->ANAC55(2)                --------->HSFB2a(2)   ----------->GT1       <---------ICU4                <---------LBD16 <---------DEAR3(2)     <----------DOF2         --------->AHL20(1)    --------->ETT(1) <---------WOX13(1)         --------->ARR11(3)  <-----------HVH21 <------------CBF         <---------AHL20(1)<---------MYB46(3) --------->ATHB12                                 ------         <---------ARR11(3)<---------DEAR3(2)<---------AHL20(2)   ---------->DOF2           --------- -CBF <---------GLK1(2) <-----------HVH21    <---------YAB1<---------YAB1              --------->MYB52(1)   agaagacagaatatttttctcggacgggtcgggtcgggtcatgtaatttgattggacctttattattccaaagcccattatcaactaaacaacgatgcaa  8977000                                                                                 <---------ICU4                                                                                --------->ICU4      -                                                                             <---------YAB1         <                                                                             --------->AHL20(2)     -                                                                             <---------AHL20(2)     <      <---------YAB1                                                        --------->AHL20(2)     --     <---------ARR11(3)                                                     <---------AHL20(2)   <---     --------->ARR11(3)                                                <---------AHL20(2)       ----- ---->DOF2                                                            <---------AHL20(2)        ===== >AtLEC2    <---------GLK1(2)       <---------ZAT6--------->YAB1      --------->AHL20(2)       <-----   agcccattatcttcgattctctgttttgcgatatagtagtgacaattttcactcataaacttcaaaccatttttaaattttaattatgtctaatcttcct  8977100         <---------AHL20(2)    <---------AHL20(2)    --------->AHL20(2)  <---------YAB1               <<<<<<<<<MYB98 -------->AHL20(2)            ----------->GT1 ---------ICU4               ----------->GT1             --------->AHL20(2) -------->ATHB51        <------ZmHOX2a(2)         ------>ZmHOX2a(1) ---------AHL20(2)      =================================HOX2a_HOX2a ------->ICU4     <---------ANAC46               --------->TOE2(3) ------ICU4       <---------bZIP60(2)           ------>ZmHOX2a(2)            --------->ANAC58 ->ZmHOX2a(1)  ----------->HVH21              --------->ARR11(3)             --------->ANAC46 ==============================HOX2a_HOX2a  <---------YAB1                   --------->ANAC58 ----MYB59   ----------->GT1<---------TOE2(2) <---------ARR11(3)  --------->AHL20(2)   aattatttttttaaaatgtgacatggatcatatgttaaaaatgagtatgatcctaaaaaaaaaatcaaaaaaattccctaagcaatgtccctaatttgag  8977200                                                    <----------DOF2                   <---------AHL20(2)                                                   <---------ANAC58                   --------->AHL20(2)          <------------------------ANAC81          <---------ANAC58           <---------ICU4       <----------DOF2                             <---------ANAC46        --------->YAB1      <---------ANAC58                        <-----------RAV1(1)        --------->AHL20(2)      ----      <---------ANAC58                    <---------GLK1(1)     <-----------GT1     --------------->AGL15   tctcgatggctttgttcttcatcttctggtttctttcaacttggatttgtgttgcttttgatatttttacctgcttaaaataatgtcttaaattagcaca  8977300                           --------->CCA1(2)                        <---------At4g35610              <---------ARR11(3)           <---------YAB1           <---------ZAT2              --------->ARR11(3)         <-----------GT1  --------->ANAC58                          -             --------->CCA1(1)       <---------TOE1(3)    --------->ANAC58                          <             --------->RVE1(1)       <---------TOE2(3)   <---------TOE1(2)                          <       ----------->GT1    --------->ARR11(1)           <---------SPL7                               - ------>ZmHOX2a(1)        <---------ARR14(2)         ------>ZmHOX2a(1)                      <-------- ----->ARR14(2)           --------->ARR14(2)     <-----------GT1    --------->At4g35610  <---------YAB1   atcctctacttgtaaatatctgaacaaggatacgatatcaaggttaccatttatcctcgcacggtttgagagctgaatgagatagtccctgaagattgac  8977400  Previous    Next  AGI:  At5g25780.1    Description:  EIF3B-2 (eukaryotic translation initiation factor 3B-2); nucleic acid binding / translation initiation factor. similar to TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B), nucleic acid binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G27640.1); similar to TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B), nucleic acid binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G27640.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN76773.1); similar to unknown [Picea sitchensis] (GB:ABK25119.1); similar to hypothetical protein OsI_033539 [Oryza sativa (indica cultivar-group)] (GB:EAY79580.1 Range:  from: 8973270    to: 8976872    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g25790.1    Description:  transcription factor. similar to tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G29000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44053.1); contains InterPro domain Tesmin/TSO1-like, CXC (InterPro:IPR005172) Range:  from: 8977103    to: 8979262    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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