Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------ANAC46                                                                 <---------ANAC58                                                                 <---------ANAC58                                                              --------->ANAC58                                                              <---------DEAR3(1)                                                              --------->ANAC58                                                              --------->ANAC46                                                              --------->O2                               --------->ANAC58               --------->bZIP60(2)                               --------->ANAC58          <xxxxxxxxxxxxxxxxsmallRNA(s)                               <---------ANAC55(2)    --------->TGA1a                   <---------MYB52(1) <-------TEIL           <---------MYB52(1)            <---------TGA1a                   <---------ARR14(2) --------->ZAT14       <-------GAMYB <------ZmHOX2a(1)--------->O2                      --------->ARR14(2) ----->ANAC58          =========================================MYC_MYB          --------->ANAC58 ----->ANAC58         --------->MYB52(2)              <---------O2               --------->ANAC58 ----->ANAC46         <---------MYB46(3)            <---------ALFIN1         --------->MYB46(3) ----- --->MYB52(1)    <-------MYC3  --------->ANAC55(2)<---------ALFIN1           --------->DEAR3(2) <---- ---->HVH21      ------->MYC3  --------->ANAC46  <-----------------AGL1 ------>ZmHOX2a(1)      <-----   cggtacagaagacagaacacatggtcgttgtctacgtaaggagcaatcgcttccacacttggccacggcgtgtccttgaacagacgctccgatatgctct  8967300                                  ------->MYC2                                                   ----                                  <-------MYC2                                                -------                                  ------->MYC3                                               --------                                  <-------MYC3                                               --------                                 --------->ANAC46                                            <-------                           --------->TOE1(1)                                                ------>NtERF2                          --------------->AtSPL3                                            ---------                         ------>ZmHOX2a(2)                                               <---------ATERF1(1)                        <---------GLK1(1)                                                --------->LBD16                       <---------ARR14(2)                                               --------->ANAC46                       --------->ARR11(3)                            <---------MYB52(2)<---------LBD16                       <---------AGP1                                --------->ANAC58--------->GLK1(2)                       --------->ARR14(2)                            --------->ANAC58--------->ARR14(2)                       <---------ARR11(3)                       ----------->HVH21    <---------ARR14(2)                      <---------CCA1(2)                       --------->ALFIN1   --------->ANAC46<--- ---->HSFB2a(2)      <---------MYB46(3)                      ------->MYC3        <-----------------AGL1 -----HSFB2a(2)  <-----------RAV1(1)                         <-------MYC3     <---------ZAT14<------NtERF2 ----LBD16 <---------ALFIN1--------->TOE2(1) <---------MYB52(1)<-----------HVH21 ----------------->AGL1   ggaacgatgtctcacacatctggtggatctcgtacacgttcttatcccttatgtgtctgtacatgtgtgacacgaacgacttcaccgaatccggcaccat  8967400                                     ------>ZmHOX2a(1)             <---------ALFIN1     ------>MYB83            ------>MYB46(1)       ------>MYB46(1)            ------>MYB83        <---------MYB59                                       <------NtERF2          --------->MYB46(3)   --------->HSFC1(2)                                    --------->RAP2.3(2)        --------->PCF2         <---------HSFC1(2)                                    --------->ANAC58        --------->SPL7         --------->HSFB2a(1)                                   --------->ANAC58      <---------SPL7           <---------HSFB2a(1)                                   --------->ANAC46     <---------ANAC58         ------->TEIL                                           --------->RAP2.6(2)     <---------ANAC58         <---------ARR14(2)      --------->ANAC58              --------->RAP2.3(1)    --------------->AtSPL3    --------->ARR14(2)      --------->ANAC58             ------>NtERF2    --------------->AtSPL8    <-----------ARR10       --------->ANAC46             --------->DREB2C(1) ----->ARR14(2)             ----------->HVH21      <---------At4g35610             <---------ATERF1(1) -------->AGL15             --------->LBD16        --------->At4g35610           <---------RAP2.6(2) --------->AGL2            --------->LBD16         <---------ZAT2               --------->At4g35610 --------->AGL3           <---------LBD16          --------->ZAT2     <------ZmHOX2a(2) ----------->RAV1(1) ----------AGL3           --------->LBD16   <---------ICU4         --------->LBD16<---------SPL7  <-- -->RAV1(1)<---------ALFIN1--------->ANAC46 --------->ATHB12      <---------TOE1(2)<---------DREB2C(1) ------ARR14(2)          <---------LBD16   <---------YAB1        <---------LBD16<---------At4g35610   atttgggtcgtacccactctccctctcccccggaccttcctcatactcattgctgctcgccattctcgccggatcaattcttagcggccgcaacaatgtt  8967500                          --------->GLK1(1)                          <---------GLK1(1)                     --------->STY1(1)                     <---------STY1(1)                  ------>NtERF2                                          --------->MYB46(3)                 ------->GAMYB                                     ------>ZmHOX2a(1)                 --------->DREB2C(2)                        <---------ANAC58                    <----                --------->DEAR4(2)     --------->MYB52(1)   <---------ANAC58                 <-------              --------->AtMYB61      --------->MYB46(3)  <---------ARR14(2)                  <-------              <---------ALFIN1--------->TOE2(3)          --------->ARR14(2)--------->MYB52(1)--------             --------->MYB46(3) <---------ICU4         --------->LBD16 <-----------GT1     --------->LBD16       *TSS  <---------MYB55(2)------>ZmHOX2a(1)     <---------LBD16<---------ICU4       <---------LBD16 -------At4g35610--------->DEAR3(1)<-----------GT1--------->YAB1  --------->TOE2(3)   --------->YAB1   agctcttaactcactaccaccgcctagggtttccttattaccaccggttctatcatccggtttcgtttccttattaccaccggttctatcatccggttat  8967600                     --------->AHL20(2)       ---------->DOF2                                       --------->YAB1  <-----------TBP    <---------AHL20(2)                      <---------ICU4 -----YAB1        --------->YAB1                            <---------YAB1 --MYB52(1)      <---------YAB1                           *TSS --ARR14(2)     --------->AHL20(2)                     --------->ANAC55(2) ->ARR14(2)     <---------AHL20(2)    ----------->GT1  --------->ANAC46   gtttttttataaagtcattttaataaaactttctatggttcggaaaaaaaaaacttcacataatcatcgctattctctctctctctctctctctctctct  8967700                                                                                            ------>ZmHOX2a(2)                                                                                          --------->ARR11(3)                                                                                          <---------ARR11(3)                                                                                          <---------AGP1                                                                                          <---------ARR14(2)                                                                                          --------->ARR14(2)                                                                                         <---------CCA1(2)                                                                                       <---------HSFC1(1)                                                                                       --------->HSFB2a(2)                                                                                       <---------HSFB2a(2)                    ---------->DOF2                                                <----------DOF2               <---------AtLEC2           <----------DOF2                      <----------DOF2 ------          <---------ARR14(2)         ---------->ID1                       <---------TOE1(2)<------ZmHOX2a(2)          --------->ARR14(2) <---------MYB52(1)       --------->YAB1     =========================HOX2a_HOX2a          <---------ICU4   <---------ANAC46          <---------ATHB51    ==========================HOX2a_HOX2a       --------->YAB1     <-------TEIL  ------>ZmHOX2a(1)                ------>ZmHOX2a(1)--------->AGP1   ctctcgctctcatatttgcaggtaaagcttcgttgattcgtcctctttatgttcaattatagtttcgcatccctcctatgtctttctttctagatcttaa  8967800                                                                                        <---------RAP2.6(2)                                                          -------->ATHB1           <---------ICU4                                                          --------->YAB1           --------->ATHB12                                                          --------->ATHB12        --------->ICU4                                                          <---------ICU4      ------>ZmHOX2a(2)                                                         --------->ICU4      <------ZmHOX2a(2)                                                         <---------ATHB12    <---------At4g35610                                                         <---------YAB1     --------->ARR14(2)                                                       ------>MYB46(1)      <---------ARR11(3)                         <-----------GT1               ------>MYB83         <---------ARR14(2)                        <---------YAB1                ------------>ATHB5    <---------AGP1                      <---------ICU4                 <---------MYB59    --------->ANAC55(2)                      --------->YAB1                 <---------MYB111(1)<---------ANAC46<---------ANAC58                --------->TOE1(3)                    <---------MYB46(2) <---------ANAC55(1)                --------->TOE2(3)                   --------->ANAC55(2) <---------ANAC55(2)               --------->ZAT6                       --------->ANAC46   <---------LBD16  <---------ANAC46          <---------ANAC58                        <-----------GT1     <-----------GT1   <---------ANAC58     --------->ATHB12--------->ICU4           <---------DAG2   <---------TOE2(3)  <---------YAB1 ---->DOF2<---------ANAC58                    <----------DOF2  <---------YAB1--------->At4g35610   agcagagtcattgcttaaccctaattatcactgttcttgtataaaacacttttcacctaatcattgagattgttacgggatctgataattgcgtctgtga  8967900                                                    ----------->HVH21                                                  <---------At4g35610           <---------TOE1(3)              <----------DOF2           <---------TOE2(3)             ------>ZmHOX2a(2)     <---------ARR11(3)                <---------ARR11(3)     --------->AHL20(2)                --------->ARR11(3)                                       <----   --------->ANAC58                 <---------WOX13(1)                                 ----------->GT1   --------->ANAC46               <<<<<<<<<RAP2.2 <-------GAMYB    <----------DOF2   <-----------RAV1(2)   --------->ANAC58              <---------TOE2(3)--------->At4g35610               <-------TEIL<----   attacaagaaattagggtttatttcttcttgattttagattgatctttttgcagttgacaattcgttctctttgggaaattagagatgcaggtaaattgc  8968000   <---------AHL20(2)  <---------AHL20(1)  <---------AHL20(2)   <---------GLK1(2)                      <---------TOE2(3)  --------->AHL20(2)   <---------ARR14(2) --------->ATHB12 <---------WOX13(1) -----ANAC58           --------->ARR14(2)<---------YAB1  --------->ATHB12 -----ANAC58   <-----------RAV1(1)------->TEIL          <---------YAB1                      ---------   ttaattttttttttgttttgttgcaaattctctgtgtatgtttatgatttgatttgatttgattgatgtaataggcatcaagagcgcgactgtttaaaga  8968100                                        <---------AHL20(2)                                 ======================HOX2a_HOX2a                                 ------>ZmHOX2a(1)                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                             <---------ARR14(3)                             --------->ARR11(3)                                                  <---                             --------->AGP1                                                   -------                             --------->ARR14(3)                                               -------                             --------->ARR14(2)                 <---------ARR11(3)            <------                             <---------GLK1(2)                ------>MYB46(1)                 <------                             <---------ARR11(3)               ------>MYB83                   --------         <-------TEIL        <---------ARR14(2)    ----------->TGA1                          <-------     <---------------AtSPL8 <---------GLK1(1)      ----------->HVH21                        <------ZmHOX2a(1) ---------->DOF2   ---------->DOF2 <---------ARR11(3)        ----------->RAV1(1)      <---------YAB1 ->DOF2  ---------->DOF2    --------->GLK1(1)   ------>ZmHOX2a(2)           ------->TEIL---------->DOF2   atacaaagaggtacagcgagagaaagtagcagatcctgatattcaattgatctgtgacgataccaacatattcaaatggaccgctcttatcaaaggacct  8968200  Previous    Next  AGI:  At5g25757.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25754.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ51676.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77307.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ58057.1); contains domain TPR-like (SSF48452); contains domain EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (PTHR13242) Range:  from: 8965248    to: 8967507    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g25760.1    Description:  PEX4 (PEROXIN4); ubiquitin-protein ligase. similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G27960.2); similar to UBC10 (UBIQUITIN-CONJUGATING ENZYME 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.2); similar to UBC10 (UBIQUITIN-CONJUGATING ENZYME 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44055.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 8967658    to: 8969352    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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