Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------AHL20(2)              --------->ICU4       <---------ANAC58       <---------ANAC58                                                  --------->ANAC58          --       <---------ANAC46             --------->ANAC46                     --------->ANAC46         --- ------>ARR11(3)                 <-------TEIL --------->YAB1             --------->ANAC58   --------- -------ARR11(3)      --------->ANAC46---------->DOF2      <---------ARR11(3)  >>>>>>>>>TBF1<--------   ggtctacttacttgtatttattcccagccaatacatacacaaaagaaatcaaaatcaacaacatctctatctaacaaggaagaagaagtagaagaattcc  8967100       ----------->HVH21  ------->GAMYB                                            <------NtERF2 --------->MYB46(3)                              <----------DOF2                                 ---- --------->RAV1(1)           --------->YAB1    --------->At4g35610                               ---- ------>ANAC46        <---------ATHB51 --------->WOX13(1)<---------DEAR3(1)                      ---- >GLK1(1)         <------NtERF2     --------->GLK1(2)  <-----------HVH21                       ------ -GLK1(1)---------->DOF2    <---------YAB1  ------>ZmHOX2a(1)                                 -------   acaacagacctgaaagaggctgcaatagttgtcataagaatcaatcctctgcttcaacgtcggagacaacctcgcatacaaatgtcgaaaccacatctca  8967200                                                                 <---------ANAC46                                                                 <---------ANAC58                                                                 <---------ANAC58                                                              <---------DEAR3(1)                                                              --------->O2                                                              --------->ANAC46                                                              --------->ANAC58                                                              --------->ANAC58                               --------->ANAC58               --------->bZIP60(2)                               --------->ANAC46          <xxxxxxxxxxxxxxxxsmallRNA(s)                               <---------ANAC55(2)    --------->O2                      <---------ARR14(2) <-------TEIL           <---------MYB52(1)            <---------TGA1a                   <---------MYB52(1) --------->ZAT14       <-------GAMYB <------ZmHOX2a(1)<---------O2                      --------->ARR14(2) ----->ANAC58          =========================================MYC_MYB          --------->ANAC58 ----->ANAC46         <---------MYB46(3)              --------->TGA1a            --------->ANAC58 ----->ANAC58         --------->MYB52(2)            <---------ALFIN1         --------->MYB46(3) <---- --->MYB52(1)    <-------MYC3  --------->ANAC58  <-----------------AGL1      --------->DEAR3(2) ----- ---->HVH21      ------->MYC3  --------->ANAC55(2)<---------ALFIN1      ------>ZmHOX2a(1)      <-----   cggtacagaagacagaacacatggtcgttgtctacgtaaggagcaatcgcttccacacttggccacggcgtgtccttgaacagacgctccgatatgctct  8967300                                  ------->MYC2                                                   ----                                  <-------MYC2                                                -------                                  ------->MYC3                                               <------NtERF2                                  <-------MYC3                                               --------                                 --------->ANAC46                                            <-------                           --------->TOE2(1)                                                ---------                          --------------->AtSPL3                                            ------>NtERF2                         ------>ZmHOX2a(2)                                               <---------ATERF1(1)                        <---------GLK1(1)                                                --------->LBD16                       --------->ARR14(2)                                               --------->ANAC46                       <---------AGP1                                <---------MYB52(2)<---------LBD16                       <---------ARR14(2)                            --------->ANAC58<---------ARR14(2)                       <---------ARR11(3)                            --------->ANAC58--------->GLK1(2)                       --------->ARR11(3)                       ----------->HVH21    --------->ARR14(2)                      <---------CCA1(2)                       --------->ALFIN1   --------->ANAC46<--- -----HSFB2a(2)      <---------MYB46(3)                      <-------MYC3        <-----------------AGL1 ---->HSFB2a(2)  <-----------RAV1(1)                         ------->MYC3     <---------ZAT14-------- ----LBD16 <---------ALFIN1--------->TOE1(1) <---------MYB52(1)<-----------HVH21 ----------------->AGL1   ggaacgatgtctcacacatctggtggatctcgtacacgttcttatcccttatgtgtctgtacatgtgtgacacgaacgacttcaccgaatccggcaccat  8967400                                     ------>ZmHOX2a(1)             <---------ALFIN1     ------>MYB46(1)            ------>MYB46(1)       ------>MYB83            ------>MYB83        <---------MYB59                                       <------NtERF2          --------->MYB46(3)   <---------HSFC1(2)                                    --------->ANAC46        --------->SPL7         --------->HSFB2a(1)                                   --------->RAP2.6(2)        --------->PCF2         --------->HSFC1(2)                                    --------->RAP2.3(2)      <---------SPL7           <---------HSFB2a(1)                                   --------->ANAC58     <---------ANAC58         --------->ARR14(2)                                     --------->ANAC58     <---------ANAC58         <-----------ARR10       --------->ANAC46              --------->RAP2.3(1)    --------------->AtSPL3    ------->TEIL            --------->ANAC58             ------>NtERF2    --------------->AtSPL8    <---------ARR14(2)      --------->ANAC58             <---------ATERF1(1) ----->ARR14(2)             --------->LBD16        <---------At4g35610             <---------DREB2C(1) -------->AGL15             ----------->HVH21      --------->ZAT2                <---------RAP2.6(2) --------->AGL2            --------->ANAC46        --------->At4g35610          <---------At4g35610 ----------AGL3           <---------LBD16          <---------ZAT2     <------ZmHOX2a(2) ----------->RAV1(1) -->RAV1(1)<---------ALFIN1--------->LBD16  --------->ATHB12       --------->LBD16<---------SPL7  <-- ------ARR14(2)           --------->LBD16   <---------ICU4        <---------TOE1(2)--------->DREB2C(1) --------->AGL3          <---------LBD16   <---------YAB1        <---------LBD16--------->At4g35610   atttgggtcgtacccactctccctctcccccggaccttcctcatactcattgctgctcgccattctcgccggatcaattcttagcggccgcaacaatgtt  8967500                          <---------GLK1(1)                          --------->GLK1(1)                     --------->STY1(1)                     <---------STY1(1)                  ------>NtERF2                                          --------->MYB46(3)                 --------->DREB2C(2)                               ------>ZmHOX2a(1)                 --------->DEAR3(1)                         <---------ANAC58                    <----                --------->DEAR4(2)     --------->MYB52(1)   <---------ANAC58                 --------              <---------ALFIN1       --------->MYB46(3)  --------->ARR14(2)                  <-------              --------->AtMYB61    <-----------GT1       <---------ARR14(2)--------->MYB52(1)<-------             --------->MYB46(3) <---------ICU4         --------->LBD16 <-----------GT1     --------->LBD16       *TSS  <---------MYB55(2)------>ZmHOX2a(1)     <---------LBD16<---------ICU4       <---------LBD16 -------At4g35610------->GAMYB--------->TOE2(3)   --------->YAB1  --------->TOE2(3)   --------->YAB1   agctcttaactcactaccaccgcctagggtttccttattaccaccggttctatcatccggtttcgtttccttattaccaccggttctatcatccggttat  8967600                     <---------AHL20(2)       ---------->DOF2                                       --------->YAB1  <-----------TBP    --------->AHL20(2)                      <---------ICU4 -----YAB1        --------->YAB1                            <---------YAB1 ->ARR14(2)      <---------YAB1                           *TSS --ARR14(2)     --------->AHL20(2)                     --------->ANAC46 --MYB52(1)     <---------AHL20(2)    ----------->GT1  --------->ANAC55(2)   gtttttttataaagtcattttaataaaactttctatggttcggaaaaaaaaaacttcacataatcatcgctattctctctctctctctctctctctctct  8967700                                                                                            ------>ZmHOX2a(2)                                                                                          <---------ARR14(2)                                                                                          --------->ARR14(2)                                                                                          --------->ARR11(3)                                                                                          <---------ARR11(3)                                                                                          --------->AGP1                                                                                         <---------CCA1(2)                                                                                       <---------HSFB2a(2)                                                                                       <---------HSFC1(1)                                                                                       --------->HSFB2a(2)                    ---------->DOF2                                                <----------DOF2               <---------AtLEC2           <----------DOF2                      <----------DOF2 ------          <---------ARR14(2)         ---------->ID1                       <---------TOE1(2)<------ZmHOX2a(2)          --------->ARR14(2) <---------MYB52(1)       --------->YAB1     ==========================HOX2a_HOX2a          <---------ICU4   <---------ANAC46          <---------ATHB51    ------>ZmHOX2a(1)<---------AGP1       --------->YAB1     <-------TEIL  ------>ZmHOX2a(1)                =========================HOX2a_HOX2a   ctctcgctctcatatttgcaggtaaagcttcgttgattcgtcctctttatgttcaattatagtttcgcatccctcctatgtctttctttctagatcttaa  8967800                                                                                        <---------RAP2.6(2)                                                          --------->ATHB12         --------->ATHB12                                                          <---------ICU4           <---------ICU4                                                          -------->ATHB1          <---------YAB1                                                          --------->YAB1      ------>ZmHOX2a(2)                                                         --------->ICU4      <------ZmHOX2a(2)                                                         <---------ATHB12    --------->At4g35610                                                         <---------YAB1     <---------ARR14(2)                                                       ------>MYB46(1)      <---------AGP1                         <-----------GT1               ------>MYB83         <---------ARR11(3)                        <---------YAB1                ------------>ATHB5    --------->ARR14(2)                      <---------ICU4                 <---------MYB46(2) <---------ANAC46<---------ANAC58                      --------->YAB1                 <---------MYB111(1)--------->ANAC55(2)                --------->TOE1(3)                    <---------MYB59    <---------ANAC55(1)                --------->TOE2(3)                   --------->ANAC46    <---------ANAC55(2)               --------->ZAT6                       --------->ANAC55(2)<---------LBD16  <---------ANAC58          <---------ANAC58                        <-----------GT1     <-----------GT1   <---------ANAC46     --------->ATHB12--------->ICU4           <---------DAG2   <---------TOE2(3)  --------->ICU4 ---->DOF2<---------ANAC58                    <----------DOF2  <---------YAB1<---------At4g35610   agcagagtcattgcttaaccctaattatcactgttcttgtataaaacacttttcacctaatcattgagattgttacgggatctgataattgcgtctgtga  8967900                                                    ----------->HVH21                                                  <---------At4g35610           <---------TOE1(3)              <----------DOF2           <---------TOE2(3)             ------>ZmHOX2a(2)     <---------ARR11(3)                --------->ARR11(3)     --------->AHL20(2)                <---------ARR11(3)                                       <----   --------->ANAC58                 <---------WOX13(1)                                 ----------->GT1   --------->ANAC58               <<<<<<<<<RAP2.2 --------->At4g35610                <-----------RAV1(2)   --------->ANAC46              <---------TOE2(3)<-------GAMYB    <----------DOF2  <-------TEIL<----   attacaagaaattagggtttatttcttcttgattttagattgatctttttgcagttgacaattcgttctctttgggaaattagagatgcaggtaaattgc  8968000  Previous    Next  AGI:  At5g25757.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25754.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ51676.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77307.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ58057.1); contains domain TPR-like (SSF48452); contains domain EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (PTHR13242) Range:  from: 8965248    to: 8967507    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g25760.1    Description:  PEX4 (PEROXIN4); ubiquitin-protein ligase. similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G27960.2); similar to UBC10 (UBIQUITIN-CONJUGATING ENZYME 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.2); similar to UBC10 (UBIQUITIN-CONJUGATING ENZYME 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44055.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 8967658    to: 8969352    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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