Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <---------------------WRI1                       <---------ARR11(3)                       --------->ARR11(3)                       --------->ARR14(2)                       <---------ARR14(2)                 <---------ANAC46              <-------GAMYB                 <---------ANAC58             <---------ANAC46                 <---------ANAC55(2)     --------->YAB1                 <---------ANAC58        --------->ATHB12                 ----------->GT1         <---------ICU4                    --------->GLK1(2)                 --------->ANAC55(2)     <--------ATHB1                   <---------GLK1(2)                 --------->bZIP60(1)    --------->ICU4          <---------REM1(1)               <---- -----DAG2       <---------bZIP60(1)    <---------ATHB12       --------->ARR11(3)               ----- ------DOF2 <-----------RAV1(1)         <---------YAB1         <---------ARR11(3)     <---------ATHB12   ttatccaattcaaattgtggcgtaatatctgcaaaacttacaatgatttcgttgaagatgaagaagatgttgctaagaatctaatacaatcacttggaat  8953100                                                                                                   <-                                                                                                   --                                                                          =======================HOX2a_HOX2a                                                      ------->TEIL        ------>ZmHOX2a(2)    ------                                                      <---------ARR14(2) ========================HOX2a_HOX2a                                                      --------->ARR14(2) --------->CCA1(2)     <-----                                                 --------->At4g35610     <------ZmHOX2a(2)  ---------                                              <---------WOX13(1)        --------->AGP1   <----------ID1                     ----------->GT1         <---------ARR14(2)         --------->ARR11(3)  ---------         ----------->GT1   --------->MYB52(1)<---------GLK1(2)          <---------ARR11(3)<------ZmHOX2a(1)        <---------------------WRI1           --------->ARR14(2)<---------ARR11(3)      --------->At4g35610 -----HSFB2a(1)    ---------->DOF2         --------->LBD16   --------->ANAC58          <---------At4g35610 ---->HSFB2a(1)---------->DOF2           <---------LBD16     --------->ANAC58      <-----------HVH21<   gtttcattagatcgaaaaaaagaaagaaaaaacgataagtctcaccggattggctgaatctgcaagttatttgagatctagagactgtgagaggacgaaa  8953200                                              <---------DEAR3(1)                                            ------>NtERF2                                            <---------RAP2.3(1)                                           <---------DEAR3(1)                                        --------->ANAC58                                        --------->TGA1a                                        <---------TGA1a                                  --------->ZAT2                                  --------->At4g35610                                  <---------ZAT2                                  <---------At4g35610                                 ------->TEIL<------NtERF2            <---------ANAC46 <------NtERF2--------->DDF1         =========================================MYC_MYB         <--------P   <-------GAMYB   <---------ALFIN1         --------->At4g35610       <---------MYB46(3)   ------>NtERF2------->PIF5         --------->GLK1(2)      <---------AtMYB61    <----------ID1<-------PIF5         --------->ARR14(2)      <---------DEAR3(1)  <------NtERF2 <---------O2          <---------ARR14(2)    --------->ALFIN1  ============================MYC_MYB    <---------GLK1(1)   --------->ALFIN1  --------->MYB111(1)--------->O2  --------->DAG2 --------ZAT14       --------->MYB46(2) =======================bZIP_DOF ------->ZAT14       <---------MYB46(3) --------->ANAC58     --------->GLK1(1) --->ARR14(2)     ================================MYC_MYB  <------NtERF2 ----ARR14(2)     ------------>MYB.PH3(2)<-----------HVH21--------->LBD16      --------->ATHB12 >ANAC58<-------GAMYB--------->MYB52(2)------->TEIL ---------->DOF2           --------->ICU4 >ANAC58==========================================MYC_MYB<---------ANAC46     <---------YAB1       -- -----------RAV1(2)  --------->MYB111(2)--------->ANAC46<---------LBD16     --------->CCA1(2)    <---   ctgcagggggggttgagttgagttagttggcgacgaagctgcacgtcggcgatgtaaaggcgggaatctgaaacgaagagatgattgtggaagagagaga  8953300                                                         <---------AHL20(2)                                                        <---------AHL20(1)                                                        <---------AHL20(2)                                                        --------->AHL20(1)                                                        --------->AHL20(2)                                                       --------->AHL20(2)                                                  --------->ANAC46             <---------At4g35610               --------->ZAT14                                      -             --------->At4g35610               <---------ZAT14                                >>>>>>>             --------->ZAT2                    <---------ZAT18                       --------->At5g28300            --------->GLK1(2)                  --------->ZAT18                      ----------->GT1*TSS ------->At5g28300          --------->CCA1(2)--------->ZAT14<-----------GT1        --------->MYB59 -- ------DEAR3(1)          <---------TOE2(3) <---------------AtSPL8        <---------AtMYB61  ---------   cggtgaaggtgaagaagctgagacattgagatttgagagagagtcagagtacacaaaattaatttcgattcagttttggtctaattcggtaaaatagata  8953400                                                                        --------->ARR14(2)    <------                                                                 <---------LBD16            <------ZmHOX2a(1)                                   <---------MYB46(3)           --------->MYB52(1) <---------MYB46(3)   ------->GAMYB                 <---------MYB52(1)            --------->MYB52(1)<---------MYB52(1) --------->MYB52(1) --------->CCA1(2)                      --------->ANAC58     --------->LBD16    -- -------->MYB52(1) --------->ARR11(3)                    ---------->DOF2<---------ARR14(2)<---------TOE2(3) >>GATA-1  <---------AHL20(2)--------->MYB52(1)       *TSS --------->ANAC58   <---------LBD16 ------- ------->MYB46(3)  <---------ARR11(3)         --------------->AGL15    <------ZmHOX2a(1)--------->ICU4 -->GT1   --------->AHL20(2)--------->MYB52(1)<---------------AGL15--------->LBD16 ----------->GT1 <-   aacaaccgaaaaataaatcgagatataaacaaaccggtggtaatcgttcatttagtagtaaaagcaaaccggaggatagacccggtggtaataaggaaac  8953500                                         <---------At4g35610                                         <------NtERF2                                        --------->RAP2.6(2)                                       --------->SPL7                                      --------->ATERF1(1)               --------->At4g35610    ------>NtERF2      --------->ALFIN1                --------->DREB2C(1)                     <---------ICU4     <-------GAMYB                    <---------DREB2C(1)             --------->ZAT2     <------NtERF2                  <---------ANAC58                  --------->At4g35610 <------MYB46(1)    <---------ORA47(2)              <---------ANAC46                  <---------ZAT2      <------MYB83    <---------MYB46(3)              <---------ANAC58               <---------ANAC58    <------ZmHOX2a(1)   <---------DREB2C(2)     <---------TOE2(3)          ------>ZmHOX2a(2)      --------->ICU4   <------   <---------DEAR3(1)      <---------YAB1--------->At4g35610       <---------ANAC58<---------TOE1(1) ---GLK1(1)    <---------At4g35610  <---------RAP2.3(2)            <---------ANAC46<---------TOE2(1) ------->STY1(1)      <---------ZAT6<---------RAP2.6(2)--------->TOE1(2)     <---------ATHB12<-------TEIL -->GLK1(1)    <-------GAMYB   <-----------RAV1(1)    <---------LBD16 <---------At4g35610--------->MYB59 --------STY1(1)      ----------->GT1<---------RAP2.3(1)--------->LBD16  <---------------------WRI1   cctaggcggtggaagtgagttgaagagttaacattgttgcggccgctaagaattgatccggcgagaatggcgagcagcaatgagtacgaggaaggtccag  8953600                                        ----------->GT1                                            --                                    --------->ARR14(2)                                             <-                      --------->LBD16   <---------ANAC46                                          ---                    <-----------------AGL3                                                        <--                    ----------------->AGL3                                                        ---                --------->ANAC58    <---------GLK1(2)                                             ---                --------->ANAC58----------------->AGL1                                            <--                ----------->HVH21   <---------ARR14(2)                                   ------->MYC2               --------->SPL7   <-----------------AGL1                                   ------->MYC3             <---------PCF2     <---------LBD16                                          <-----------            <------MYB46(1)     --------->ATERF1(1)           ------->MYC3               <-------MYC2            <------MYB83--------->ARR14(2)                    <-------MYC3               <-------MYC3           <---------------AtSPL8 --------->LBD16          <---------ALFIN1             <---------ANAC46           <---------MYB46(3)   <------NtERF2           ----------->HVH21           --------->ANAC58           <---------------AtSPL3<---------ANAC46      <-----------HVH21            --------->ANAC58-          --------->ALFIN1     ------>NtERF2        <---------ANAC58           <----------ID1    ----        --------->ALFIN1<---------ARR14(2)          <---------ANAC58         --------->DAG2   <------ -----RAV1(2)<---------SPL7<-----------RAV1(1)      --------->MYB52(2)      --------->MYB52(1)<------   gggagagggagagtgggtacgacccgaatatggtgccggattcggtgaaatcgttcgtgtcacacatgtacagacacataagggacaagaacgtgtacga  8953700                                                                   --------->TGA1a                                                                   ==================================                                                                   <---------TGA1a          --------->ALFIN1                                         --------->O2  ----------->RAV1(1)                                      <---------O2--------->ALFIN1 ------->CCA1(2)                                           <---------ANAC46 -----ZmHOX2a(2)                                           <---------ANAC58 ------>ARR14(2)                                           <---------bZIP60(2)                      - -------ARR11(3)                                           <---------ANAC58                        <- ------>AGP1                            <---------ANAC58   --------->DEAR3(1)                      -- ------>ARR11(3)                        <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(s)            ---- -------ARR14(2)                 --------->MYB52(1)     --------->ANAC46                  <---------ANAC55(2) ----AtSPL3                      --------->ARR14(2)     --------->ANAC58                  --------->ANAC55(2) -------->MYB46(3)               <---------ARR14(2)     --------->ANAC58                  <---------ANAC46 ----->GLK1(1)            --------->LBD16           <------ZmHOX2a(1)--------->ALFIN1     <---------ANAC58 ---TOE2(1)              --------->HSFB2a(2)<---------DEAR3(2)     <---------O2           <---------ANAC58 ---TOE1(1)              <---------HSFB2a(2)<---------MYB46(3)  ----------------->AGL1 ------>ZmHOX2a(1)   gatccaccagatgtgtgagacatcgttccagagcatatcggagcgtctgttcaaggacacgccgtggccaagtgtggaagcgattgctccttacgtagac  8953800      ------->MYC3        <---------MYB52(1)      <-------MYC3       <-----------HVH21 =======MYC_MYB         <---------ANAC46                                  <---------At4g35610-------- ------>GAMYB           <---------ANAC58                               ---------->DOF2      <-------- --------MYB52(2)       <---------ANAC58                         ------>NtERF2  <------ZmHOX2a(1)  -- ------->MYB46(3)     ------->TEIL                              ----------->HVH21    <---------GLK1(2) ----->MYB52(1)     <---------ZAT14                             --------->DEAR3(1)<---------WOX13(1)   aacgaccatgtgttctgtcttctgtaccgtgagatgtggtttcgacatttgtatgcgaggttgtctccgacgttgaagcagaggattgattcttatgaca  8953900                       <---------ANAC46                     <-------GAMYB            <-----------HVH21<---------GLK1(1)  <---------ANAC58 ->YAB1    <----------DOF2   --------->GLK1(1)  <---------ANAC46                     <---------ANAC46 -YAB1------>NtERF2 <-----------RAV1(1)         <---------ANAC58           <---------YAB1 ------->TEIL ------->ATHB51     <---------MYB46(3)     <<<<<<<<<TBF1      --------->ARR11(3)  <----------DOF2  <-   actattgcagcctctttcaggtctgttgtggaattcttctacttcttcttccttgttagatagagatgttgttgattttgatttcttttgtgtatgtatt  8954000  Previous    Next  AGI:  At5g25752.1    Description:  rhomboid family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44068.1); contains InterPro domain Peptidase S54, rhomboid; (InterPro:IPR002610) Range:  from: 8951267    to: 8953399    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g25754.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25757.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ51676.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77307.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ58057.1); contains domain TPR-like (SSF48452); contains domain EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (PTHR13242) Range:  from: 8953454    to: 8955793    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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