Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------ARR11(3)                                              --------->YAB1                                  --------->HSFB2a(1)                                  --------->HSFC1(2)                                  <---------MYB46(3)    ----------->TBP                                  <---------HSFC1(2)--------->CCA1(2)                                  <---------HSFB2a(1) <-----------TBP      --------->DOF5.7(2)                        <---------ANAC58   --------->YAB1                 --------->TOE1(3)                    <------------CBF    --------->HSFB2a(2) --------->ANAC58                   ------   <-----------------------TaNAC69(2)   <---------HSFB2a(2) --------->ANAC46                   <-----   --------->ARR11(3)   <---------ANAC58------>ZmHOX2a(1)   --------->ANAC58 <---------DOF5.7(2) -------->DOF2  ---------->DOF2<---------At4g35610 --------->ARR11(3)     --------->TOE2(3)----------   ccaaagatgtacaagagaaaaagattgctggacagatggttcctagaatcatagatatatataagccagagaaaaacgttaacatcagccagagaaagaa  8950500                                                                           ---------->DOF2            --------->At4g35610     ----------->HVH21                   --------->LBD16            <---------At4g35610   --------->YAB1                      <---------LBD16     ---------->DOF2              <---------AtLEC2                   --------->MYB52(1) --->ARR11(3)      --------->At4g35610                      <---------------AtSPL8 ----ARR11(3)      <---------At4g35610      <-----------RAV1(1)  ----------------->AGL1 >DOF2--------->DAG2   ----------->HVH21  <---------GLK1(2) --------------->AtSPL8         <-------TEIL   cttagcaaaaagtaagcagagagctctcaccagttagcatgacagaatgttgcagtcacaaactggtaccataccggaaaatcgctagacaaatacatcg  8950600                                                                               <---------ATHB12                                                                           --------->MYB46(3)                                                                           ------------>CBF                                                                       --------->MYB46(3)                                                                       <---------MYB52(2)                                                                     ------>MYB83                                                                     ------>MYB46(1)                                                                     --------->MYB52(1)                                                                    --------->MYB55(1)                                                                   <---------MYB46(2)                                                                   <---------MYB111(2)                                                                   <---------MYB52(2)                                                                   <---------MYB59                                                                  --------->ANAC55(1)                                                   ------------>CBF<---------MYB111(1)           ------->TEIL                        --------->YAB1     --------->ANAC55(2)           -----       --------->LBD16             <-----------GT1>>>>>>>>>>>>>>>>>LFY>>>>>>>>>MYB98            <----      --------->LBD16          <----------DOF2<---------YAB1      --------->ANAC58            -------     <---------LBD16           <---------DAG2<---------TOE2(2)    --------->ANAC58       <-----------     --------->TOE1(2)      <-----------GT1--------->TOE2(2)      --------->ANAC46       ------------    ------>ZmHOX2a(2)  --------->AHL20(2)  --------->TOE1(2)      <---------ANAC55(2) --------->ZAT6   atttgatcccgcgaacctatatcgaataaataacttttttctaaacgtatgataccaatgtgaaaaacacctaacaaaccaatgcttcacactaaaaaaa  8950700                                                                                      <------MYB46(1)                                                                                   <---------ANAC58                                                                                   <---------ANAC46                                                                                   <---------ANAC58                                                                          <-----------GT1                                                                         --------->KAN4(2)                ------->TEIL                                            <---------HSFB2a(1)        --------->TOE1(2)                                               <---------KAN4(1)    --------->RVE1(1)                                                   --------->HSFB2a(1)  --------->AHL20(2)        --------->ALFIN1                            --------->KAN4(1) ------>GT1     --------->MYB52(1)                  <---------WOX13(1)  <----------TaMYB80 ------ID1   --------->ANAC58                      <------------CBF    ---------->TaMYB80 --->DOF2------>ZmHOX2a(1)  <---------ZAT6        --------->ATHB12     <---------KAN4(2)      <------ ----AGL15   --------->ANAC46             <---------ICU4      <---------YAB1       <---------AtLEC2 --->AGL15   --------->ANAC58         ----------->TBP --------->YAB1  --------->YAB1  <------MYB83   gaaaaaaaatcctacaagtacctgatagaagtgttgagctataaatatggcaagattgataagtatgatcaagaatattccatttgcttggtttagtggt  8950800                                             ----------->GT1                                            --------->HSFB2a(2)                                        <---------ANAC58                                        <---------O2                                        --------->TGA1a                                        <---------TGA1a                                        =================================bZIP_DOF                                        --------->bZIP60(1)                                        <---------TGA2(1)                                        --------->TGA2(1)                                        --------->O2                                        <---------bZIP60(1)                                        =================================bZIP_DOF                                        <---------ANAC58                                        <---------ANAC46                                        <---------bZIP60(2)                                       ----------->STF1                                     ----------->TGA1                   ------------>CBF  ----------->HVH21              <---------DAG2        <-----------HVH21              <----------DOF2      <---------ANAC46    <---------ANAC46             <---------YAB1       <---------ANAC58            <---------ANAC58    <---------ANAC58     <---------TOE2(3)       <---------ANAC58            <---------ANAC58    <---------ANAC58   ---------->DOF2          <-  <---------MYB52(1)        <------------CBF<---------HSFB2a(2)        <---------ZAT6   ----------->GT1 ---MYB46(3)  ====================================bZIP_DOF    <----------DOF2     --------->YAB1   --   ttctgtttgtcttgtgctttatccaattcaaattgtggtgtgacgtctggaaaattttcttggacttttacaagtgtaaaggaaacatgatggaaaaatc  8950900                                         ------>ZmHOX2a(2)                                        <---------At4g35610                                        ========================HOX2a_HOX2a                                        <------ZmHOX2a(2)                                        --------->CCA1(2)                                        --------->At4g35610                         --------->ARR14(1)                        --------->ARR14(2)                           --------->ALFIN1              --------->ARR11(3)       --------->ARR11(3)         <---------DEAR3(1)              <-----------ARR10        <---------ARR14(2)    ---------->DOF2              <---------ARR11(3)       <---------ARR11(3)  --------->ANAC58              --------->CCA1(2)             --------->CCA1(1)         --------->AGP1 --------->At4g35610             <---------TOE2(3)             --------->RVE1(1)         <---------AGP1 <---------At4g35610        <---------ANAC46     ----------->GT1    <---------ARR14(2)----------->HVH21--------->ANAC58  <-------GAMYB    <---------TOE2(3)   <---------GLK1(2)=======================HOX2a_HOX2a --------->MYB52(2) --------ARR14(2)     --------->LBD16  --------->ARR14(2)<------ZmHOX2a(1)  --------->MYB46(2) ------->ARR14(2)   <---------LBD16   <---------GLK1(1) <----------ID1   ------------>MYB.PH3(2)   gaattcgaggttaaaaaatctcaccggattcgctggaacgagatctgacgaaggtgagaggacgaaagacggtggagttagttgagttgagatagagggg  8951000         <---------ANAC46        <------NtERF2       <------MYB83         <---------DEAR3(1)       <------MYB46(1)     ------>NtERF2      <---------DEAR3(1)   <------NtERF2     <--------P           --------->LBD16    <---------ANAC58      <---------RAP2.3(1)    <-------GAMYB         ------>NtERF2    <---------ANAC58     <---------DEAR3(1)    <---------HSFB2a(2)                             ------   <------MYB46(1)  <---------ALFIN1           --------->HSFB2a(2)                             <-----   --------->MYB55(2)   <---------ZAT14       <---------LBD16                               ---------   --------->MYB52(2)   <---------LBD16     --------->GLK1(2)                             --------->At5g28300   <---------MYB46(3)   --------->ZAT14  --------->At5g28300         --------->ALFIN1   <---------ANAC46   <------MYB83    --------->ZAT14    --------->RAP2.6(3)          <-----------RAV1(1)  <---------DEAR3(1)  <---------AtMYB61<---------ZAT14  ----------->TGA1              --------->GLK1(2)  ----------->HVH21 <--------P     --------->At4g35610 --------->ICU4            >>>>>>>>>TBF1          ----------->TGA1   agagttggttggcgaagaagctacactgcggcgatgtaatgacggtaatctggaacgaagagaagaagaatgtgggagggagagatagtgacggtgaagc  8951100             --------->At4g35610             <---------ZAT2             <---------At4g35610                                                  <---------ZAT14             --------->ZAT2                                                   <---------WRKY18(1)         <---------REM1(1)                                                   --------->WRKY12   --------->ALFIN1                                                          --------->WRKY38(1) --->At4g35610                     <---------ARR11(1)                 --------->CCA1(2)<---------MYB46(3) ----At4g35610                     --------->ARR11(3)     <---------ANAC58   --------->WRKY45 ->DOF2  --------->ALFIN1         <---------CCA1(2)       <---------ANAC58  --------->DOF5.7(2)  <---   tgaaggtgaaggtgaagctgagacatttgagaactcaaatctttgatcagacttggacttgcttcttcaaaaatatgcgttgactgaagttgttgtatgc  8951200                                 ----------->HVH21                                ------>ZmHOX2a(2)                    <---------AHL20(2)                    --------->AHL20(2)                --------->AHL20(2)                <---------AHL20(2)--------->MYB52(1)            --------->AHL20(2) --------->CCA1(2)        --------->YAB1         <------ZmHOX2a(2)        <--------ATHB1        --------->ARR11(3)                  --------->MYB46(3)       <---------YAB1         <---------AGP1                <---------At4g35610         <---------ANAC58       <---------ATHB12       --------->AGP1          --------->DAG2                    <---------ANAC58       --------->ICU4 ---------->DOF2  <---------GLK1(2)    --------->At4g35610         <---------ANAC46 -------DOF2<---------AHL20(2)<---------ARR11(3)     ---------->DOF2    --------->REM1(1)   tttaagacaatgattttattaattaaaagtaagatctaacagattatagaaatcaaaaagtaagctcaacaactacatccacttacttctgcgtatgctt  8951300                        >>>>>>>>>MYB98                    ----------->GT1           --------->GLK1(1)                 --------->YAB1         ----------->RAV1(1)          ---------->DOF2                <---------ATHB12     --------->MYB52(1) ---------->DOF2                   <---------MYB52(1)   agtggcattggtaaaccaatgagagtaacatagacaaactagcgacagaattctatagcaaagactactcacaaaggctcggtttagagaccgttcttca  8951400  Previous    Next  AGI:  At5g25750.1    Description:  unknown protein Range:  from: 8950887    to: 8951146    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g25752.1    Description:  rhomboid family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44068.1); contains InterPro domain Peptidase S54, rhomboid; (InterPro:IPR002610) Range:  from: 8951267    to: 8953399    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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