Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->ZAT2                                                                                  <---------At4g35610                                                                                  <---------ZAT2                                                                               <---------At4g35610                                                                        <---------MYB46(3)       ----                                                                     ------->GAMYB--------->At4g35610                                                                   --------->At4g35610          -----               <---------ANAC46             --------->ATHB12       <---------At4g35610  <<<<<<<<<<GATA-1          <---------At4g35610 <------ZmHOX2a(2)                   ----------->RAV1(1)  --------->GLK1(1) ------->HVH21<---------TOE2(3)    ---------->DOF2               <---------WRKY38(1)   <---------GLK1(1)   ggacaccgatggagatgaggtagaaggaagggatcaacaaagtgcctcattggactcaaacgataagtcaacagaggttgaagcagctgaaatccacaat  8906000                                                          ----------------->AGL2                                                          <------NtERF2                                                      <------MYB46(1)                                                      <---------ANAC58                                                      <------MYB83                                                      <---------ANAC58                                  <----------CDC5    <---------MYB46(3)                                --------->ANAC58     <---------AtMYB61                                --------->ANAC58     --------->MYB111(2)                  <----------      ---------->DOF2          <---------------------WRI1 ----------------->AGL3         <------ZmHOX2a(1)   --------->YAB1             <------ZmHOX2a(1)      --------->MYB46(2)                --------->ANAC46  <---------YAB1     --------->ANAC58                --------->MYB59                -------->P      < ----->YAB1          --------->ANAC58                --------->MYB111(1)    ---------->DOF2<---------GLK1(1) ------>TGA1       --------->CCA1(2)     ---------->DOF2 ------>NtERF2  <----------ID1<---------LBD16   gacgatgataaagagaatgagataagcaaggaggacgcagagccaaaggaagagtttggtgccaaaaacaggttgagacaaagagttaccaggaactcag  8906100                                                                            <------MYB83                                                                            <------MYB46(1)                                                                            <---------MYB46(3)                                                                           <---------AtMYB61                ------>ZmHOX2a(1)                                          --------->MYB55(2)               --------->TOE2(3)                                           <---------MYB46(3)    ----          <---------AHL20(2)                                              <---------MYB52(1)    <----         --------->AHL20(2)                                              <-------GAMYB   ------>MYB46(1)    <---------MYB52(1)                       <----------DOF2            <-----------RAV1(1) <-------- -ARR10  <---------AHL20(2)        ----------->GT1   ----------->RAV1(1)<---------MYB46(3)  <-------- ---------At4g35610 <-----------RAV1(1) ---------->DOF2          <---------MYB52(1)      ------>MYB83   ccatctgttaatttaatcctcaatgttgttgaagaaatagtaaaaagcttttgaacaacaaaacatcgttttgtctgttggtggagagaccaagcttttt  8906200                                                                                                  <--                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             --------                            --------->ALFIN1                                                 --------                           <---------ZAT14                                                   <-------                          <---------ANAC46       <---------YAB1                             <--------                          --------->ALFIN1     --------->YAB1               <---------ARR14(2) <-----                        <---------ANAC46      --------->ICU4              ----------->ARR10 <--------                        <---------ANAC58--------->AHL20(1)              --------->REM1(2)   ---------                        <---------ANAC58<---------AHL20(2)              --------->ZAT14   <---------ICU4 ----->ATHB12  <----------DOF2     --------->AHL20(2)   --------->ANAC46<---------ZAT14   --------->YAB1 -----YAB1     <---------DAG2----------->GT1--------->YAB1        --------->MYB52(1)     --------->AHL20(2) --DOF2       <-----------------AGL3    <---------AHL20(1)       ------>ZmHOX2a(1)       <---------AHL20(2) -DAG2      <------ZmHOX2a(1)<---------ANAC46 <---------YAB1    <---------MYB59      <---------YAB1   gattagaaggtttaggactttttttggtgtgtggtgatataatatatgatgatgatatactccattcctaacagtgtagatttgactcttattaattatt  8906300 ---------RAV1(1) --AHL20(2) ->ATHB51 --ICU4 ->YAB1 >HAHB4 >ATHB1                                                --------->ANAC55(2)                 <--------- -HAHB4                                               <---------TOE1(3)              <---------RVE1(1) -YAB1                   ----------->GT1              --------->MYB59                <---------CCA1(1) ----YAB1          <---------TOE2(3)            --------->DAG2     <---------YAB1   <---------ARR11(3) -ATHB51       <----------DOF2                 ---------->DOF2   --------->YAB1     --------->ARR11(3) >ICU4     <---------ALFIN1        <---------GLK1(2)  <---------TOE2(3) ----------->GT1  <---------AHL20(2)   atgtggtatctccccatctttgatgtatggtaaactatattctcagaaaaaaagtttaggtattcgattataagtagtttaaaatagatatttcattgtg  8906400                                                                             <---------DEAR3(2)                                                                            <---------TOE1(2)                                                                           xxxxxxxxxxxxxxx>smallRNA(se3)                                                                           --------->ALFIN1                                                                         <---------ANAC46                                                                         <---------ANAC58                                                                         --------->ALFIN1                                                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                    xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               --------->TOE1(1)                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               --------->ZAT18xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <---------AtMYB61 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              xxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->TOE2(1)                             xxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ANAC46                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   xxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ARR14(2)  <---------ANAC58                   xxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxx>smallRNA(fl3)                   *TSS <------NtERF2         xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxx>smallRNA(se3)               <-----------HVH21              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     >>>>>>>>>ARR2 xxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ARR14(2)xxxxxxxxxxxxxxx>smallRNA(le3)     >>>>>>>>>ARR1 xxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxx>smallRNA(fl3)                   -     <------------CBF <---------RAP2.6(2) --------->ATERF1(1) ------>ZmHOX2a(1) <-------TEIL  -------    --------->ATHB12  --------->ALFIN1    <------NtERF2xxxxxxxxxxxxxxx>smallRNA(le3)      --------->TGA1a   <---------YAB1<-----------RAV1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <------NtERF2<---------ALFIN1 ---CBF   ---------->DOF2  <------NtERF2 ------>NtERF2 xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx   aaaatatgattgtaaagagtcagggtggccgagtggtctaaggcgccagactcaagttctggtcctcgtaagagggcgtgggttcaaatcccacttctga  8906500           <---------AHL20(1)           --------->AHL20(2)          <---------AHL20(2)          --------->AHL20(2)                                             --------->ANAC46      <---------AHL20(2)                                                 --------->ANAC58      --------->AHL20(1)                                      --------->AHL20(2)      --------->AHL20(2)                                      --------->AHL20(1)     <---------AHL20(2)                                       <---------AHL20(2)     --------->AHL20(2)                                   --------->AHL20(2) <---------AHL20(2)                                      <---------AHL20(2)  <---------At4g35610 --------->AHL20(2)                                      --------->AHL20(2)  --------->At4g35610 -------->AHL20(2)        ----------->GT1        <---------YAB1          --------->ANAC58 ---->HVH21<---------AHL20(2)  --------->ICU4 --------->ICU4 <---------AHL20(2) >smallRNA(s)     <-----------GT1            <----------DOF2 --------->AHL20(2)       --------->ZAT6   catttaattttattaaatttttagcatgttgtaattttgggcaatggcattatgttgatataaattaattaacacaggcaactcagtaacaatactagat  8906600                                                                                                    <                                                                                                    <           <-----------HVH21                                                                  -------      <-----------ARR10                           <---------ARR11(3)                         <-------TEIL      --------->GLK1(2)                        ----------->RAV1(1)                          ---------      --------->ARR14(2)                 <---------YAB1      ----------->GT1               --------->ARR14(2)      <---------ARR14(2)               --------->YAB1       ----------->GT1                <---------ARR14(2)     <---------GLK1(2) <---------YAB1 <---------ATHB12     <---------TOE2(2)         <---------HSFB2a(2)   aactacagaatctggtcacaaaactatgcttaatgttcccatcataatacaacatattacataggttaaatagaactaaaactggttcaagaagattcag  8906700                                                                                                <----                                                                                              ------>ZmHOX2a(2)                                                                                             <-------                                                                                             <------ZmHOX2a(2)                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------        <---------MYB52(1)                                                                  <--------   <---------ALFIN1                                                                  <xxxxxxxxxxxxxxx  <---------ABI4(2)                                                  --------->YAB1  <---------ANAC46 ---------TCP16(1)                                             <---------ANAC58    --------->ZAT18 ---------TCP20                        <---------At4g35610     <---------ANAC58    --------->ZAT14--- -->ATHB12                  --------->CCA1(2)           <---------At4g35610        <---------ZAT14--- >GLK1(2)    <---------GLK1(1)<---------YAB1            --------->At4g35610        <---------ZAT18---   tggctccaccgtttgatttctgactctgcgatatgattctgagcttctcatatgagtcagcacaagcgtgagcataatcagacagtgccctgaagatctc  8906800       --------->ARR11(3) --------->WOX13(1) -------RAV1(2) --GLK1(1) -ARR14(3) >ARR11(3) -ARR14(2) >ARR14(3) -ARR11(3) >ARR14(2)                                                                     --------->ANAC58 -AGP1 <---------ARR11(3)             ----------->RAV1(2)                      --------->ANAC58 ---ARR10------>ZmHOX2a(2)            --------->At4g35610                <<<<<<<<<TBF1 xsmallRNA(s)                         <---------At4g35610             <<<<<<<<<TBF1 ------>ANAC58                      <---------ALFIN1               <<<<<<<<<TBF1         <---------ZAT14 ------>ANAC58             <---------GLK1(1)                 <---------At4g35610   <----------DOF2 <- ------>ANAC46             --------->GLK1(1)                 --------->At4g35610  <---------DAG2  <--   aggcaatctgatcttcaaactgtttagagatttctccctcacctgaacacaatgtctctggtgagcttcttcttcttcttcaagccttttcttcagtgtc  8906900  Previous    Next  AGI:  At5g25580.1    Description:  similar to aminoacyl-tRNA synthetase family [Arabidopsis thaliana] (TAIR:AT1G18950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44138.1) Range:  from: 8903508    to: 8906314    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g25585.1    Description:  pre-tRNA. tRNA-Leu (anticodon: CAA) Range:  from: 8906419    to: 8906502    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g25590.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52320.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52320.4); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52320.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44106.1); contains InterPro domain Actin-binding FH2 (InterPro:IPR015425); contains InterPro domain Protein of unknown function DUF632 (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630 (InterPro:IPR006868) Range:  from: 8906601    to: 8909923    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version