Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ATHB12                                                                                    --------->ATHB51                                                                                    <---------ICU4                                                                                   <---------ATHB51                                <---------ANAC46                                   --------->ICU4                                <---------ANAC58                                   <---------YAB1                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                <---------ANAC58                           <---------MYB46(3)                               <---------TOE2(3)                          <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <---------ICU4                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->ALFIN1                       <------ZmHOX2a(2)                                <---------ANAC58            x     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               <---------ANAC46          ---    --------->ATHB12  <---------ARR11(3)                                <---------ANAC58          <xx   <---------YAB1     --------->ARR11(3)                               <---------MYB46(3)     <------   <---------ATHB12xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------STY1(2)  =============HOX2a_HOX2a                         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)x ------>STY1(2)  <------ZmHOX2a(1)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxx ->ZAT6xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <----------DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   agctaatgaatggatgaaaggatagatcatacttacgtttgattcttgattttgactttgatttttgtcagtttgggtggatgccataattgagagaata  8897500                                                                    --------->AHL20(2)                                                           --------->ATHB51                                                           <---------ICU4                                                           --------->AHL20(2)                                                           <---------AHL20(2)                                                          --------->ICU4                                                          <---------YAB1                                                       <---------YAB1                                                       <---------AHL20(2)                                                       --------->AHL20(2)    <---------AHL20(2)                                                     --------->CCA1(2)   <---------AHL20(2)        --                                                    <---------ARR11(3)  --------->AHL20(2)   <-------                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          --------                                              --------->ALFIN1  <---------AHL20(2)         <xxxxxxxxx            <---------TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------AHL20(2)     --------->MYB52(1)       --------->ATHB12    --------->YAB1   <---------ANAC58    --------->AHL20(2)         ------>MYB83      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ANAC46   --------->AHL20(2)          ------>MYB46(1)     <---------WOX13(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------AHL20(2)        <---------MYB46(2)   --------->ATHB12 <---------YAB1          <---------ANAC58--------->AHL20(1)           xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------MYB46(3)<---------YAB1 <---------AHL20(1) <xxxxx <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ALFIN1--------->YAB1  <---------AHL20(2)<xxxxxxxxxx xxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------YAB1           <---------MYB59 -------->GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ARR11(3)  <---------AHL20(1)xxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->AHL20(2) ------ ---ARR14(2)<---------TOE1(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->AHL20(1)  <xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------AHL20(2)------- xxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(1)<-----------GT1   gggtttcattgattagggttttctgataagaataagtatagggtttgggtggaagatataattattttaattaattaatttttttttttaacctaaccgc  8897600                                                                                          <xxxxxxxxxx                                                                                        --------->MYB46(3)                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       ------>MYB46(1)                                                                                       ------>MYB83                                                                                      --------->MYB55(1)                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <------NtERF2                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                   ------>NtERF2                                                                                   <xxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                <------MYB83                                                                                <------MYB46(1)                                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                               <---------MYB46(3)                                                                              <---------WOX13(1)                                                                            --------->ATHB12                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                           <---------YAB1------->GAMYB                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          ------->GAMYB                                                  xxxxxxxxxxxxxxxx>smallRNA(i)          --------->RAP2.6(2)                                       xxxxxxxxxxxxxxxx>smallRNA(s)          --------->ANAC58                                          xxxxxxxxxxxxxxxx>smallRNA(i)         --------->MYB46(3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <xxxxxxxxxxxxxxxxsmallRNA(i)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->At4g35610                                          xxxxxxxxxxxxxxxx>smallRNA(s)     <---------At4g35610                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <------NtERF2         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)     --------->LBD16   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC58   <---------HSFB2a(2)                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)    --------->ANAC46  <---------ANAC46                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC58  <---------ANAC58                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->SPL7     <---------ANAC58                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------SPL7<---------ARR14(2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) ------->DEAR3(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxx -----AtMYB77  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      -- ->MYB46(3)--------->LBD16 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxx xxxxxxxxxxxxxxsmallRNA(fl3) <------ZmHOX2a(1)           ----------->GT1xxxxxxxxxxxxxxxx>smallRNA(s) xxxx>smallRNA(s) <---------ANAC58                     --------->SPL7<---------ARR14(2)-------->P --- xxxxxxxxxxxsmallRNA(i)--------->LBD16                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <--- xxxxxxxsmallRNA(fl3)<---------LBD16        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxx>smallRNA(s)<---------ANAC58     <---------GLK1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ----- --->At4g35610 --------->ARR14(2)<----------DOF2     <---------SPL7xxxxxxxxxxxxxxxx>smallRNA(s) <---- xxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)- -->ANAC46--------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->MYB52(1) <xxxxxxxxxxxxxxxxx   taccgtccgcaaccgcaaatacttgcgggaaggagcttttgaaatctggcaatttcgaacggtatctagcggtttctatgattggtgccaaccgctaata  8897700       --------->At4g35610  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxsmallRNA(i) xxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxsmallRNA(i2) xxxxxxxxx>smallRNA(si3) xxxxxxxxxsmallRNA(si3)       --------->ALFIN1                                 <---------ANAC58 xxxxxxsmallRNA(si3)         ------->PIF5                                      <---------ANAC58 xxxxxxsmallRNA(si3)         <-------PIF5          --------->ANAC58           <---------TOE1(3) xx>smallRNA(i2)            <---------At4g35610    --------->ANAC58           <---------TOE2(3) xxxxxxxxxx>smallRNA(le3)   --------->At4g35610  ---------->DOF2             <---------DOF5.7(2) ------->ANAC46             --------->ZAT2      <---------ATHB12            ----------->HVH21 xxxxxxsmallRNA(s)          <---------ZAT2     ------>MYB83                 --------->WRKY12 ------>MYB46(3)          <-----------RAV1(2)  ------>MYB46(1)             <---------WOX13(1) ------At5g28300    <---------ANAC58          --------->WOX13(1)          <-------GAMYB ---->MYB52(1)      <---------ANAC58        <xxxxxxxxxxxxxxxxsmallRNA(s) <------MYB46(1) -------GT1    --------->ANAC46             --------->MYB46(3)          <---------AtMYB61 -------->At4g35610 <---------ANAC46   <------ZmHOX2a(1)             --------->ARR11(1)             - xxxxsmallRNA(si3) ------>NtERF2<------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(i)<------MYB83       ---------   accgctaccatctgcaaacgctgcgtttgcaggtggcagaaggagaaccaatcaagcccttaaaacatatagatttggttgacgtttcttaacccaaaga  8897800                                                 --------->ANAC55(1)                                                 --------->ANAC46                                                 --------->ANAC58                                                 --------->ANAC55(2)                                             <---------ALFIN1                                <----------DOF2<---------ALFIN1                  ----------->RAV1(2)                               <---------------AGL15                             <---------At4g35610                               --------------->AGL15                             --------->At4g35610                               --------->TOE2(3) --------->ANAC58                --------->ZAT2                              ----------------->AGL1                 <---------AHL20(2)   --------->YAB1             ----------------->AG                   ----------->TBP  <---------ATHB12            ----------------->AGL3                 --------->AHL20(2)  <<<<<<<<<ARR2               <-----------------AGL3               ----------->TBP       ----------->GT1 -------->WOX13(1)            ----------------->AGL2         <-----------GT1   <---------ALFIN1 ->DOF2             ----------->GT1   --------->ANAC46 <---------AHL20(2)     ------>ZmHOX2a(1)   aacaatcaaaattcgaagtatgtggaaacatttcctttataagaaacccacacgcatttttttttacttatataaatctcctcacctgcaagagaaaaaa  8897900                         <-------TEIL                     --------->MYB52(2)                   <---------MYB52(1)                                  <-----------GT1                  <-----------TGA1    <---------LBD16                 <-----------GT1                  <-----------HVH21 <---------ANAC58               --------->GLK1(2)         --------->AHL20(2)         <---------ANAC46           <------NtERF2                      ---    *TSS <---------AHL20(2)    <-----------RAV1(1)           <---------DEAR3(1)               <------  <----------DOF2--------->ETT(2)   <---------ANAC58   --------->YAB1<---------AHL20(2)    --------->GLK1(2)   aaaactttcattttattcgtcgtcagtttcatcttgttgcttcggagcgagcgagaattatcgtcggagaatttatcgtctctctctctgaaaattctga  8898000                                                        <---------AHL20(2)                                                        --------->AHL20(2)                                                   <---------MYB52(1)                                                  --------->LBD16                                                 <---------ANAC46                     <---------HSFB2a(1)         --------->ANAC55(2)                     --------->HSFC1(2)          <---------ANAC58                     <---------HSFC1(2)          <---------ANAC55(1)                     --------->HSFB2a(1)         <---------ANAC55(2)                   ---------->DOF2               <---------ANAC58                 ------>ZmHOX2a(2)         <---------ANAC58                <------ZmHOX2a(2)          --------->ANAC55(2)               <---------ARR14(2)          <---------ANAC58             <---------DEAR3(2)           <---------TOE2(3)            <---------TOE1(2) <-----------GT1 --------->ARR14(2)       --------->GLK1(2)<-------TEIL     <---------DOF5.7(2)   <----------DOF2 <---------ANAC58 --->ZmHOX2a(2)--------->ARR14(2)      --------->DOF5.7(2)     ------>ZmHOX2a(1) ---YAB1  <-----------HVH21  <---------CCA1(2)<---------ARR14(2)               <---------ANAC58    <-   tcggtgaagaatcgtcggatcgaaagttcgtttatcttctcgtttacgtttccgtgatttaaatcctttggggtttttttttcttggtaatgtctgtgtt  8898100                                                                                      --------->At4g35610                                                                                      <---------At4g35610                                                                                    <---------HSFB2a(2)                                                                                <---------ARR11(3)                                  <----------DOF2                               --------->ARR11(3)          <--------P          --------->ZAT14                                  --------->HSFB2a(1)          <---------WOX13(1) <---------DAG2                               --------->HSFB2a(2)         <-------GAMYB       <----------DOF2                          --------->AHL20(2)        ----------->GT1  <---------ZAT14      <------MYB83            <---------AHL20(2)        <---------MYB46(3)  --------->ANAC46  <------MYB46(1)         --------->AHL20(1)  >>>>>>>>>TBF1       <---------AtMYB61 <---------ZAT18------>ZmHOX2a(2)----------->GT1  <---------HSFB2a(2)     --------->ALFIN1--------------->AtSPL3  --------->MYB59<---------AHL20(2) <---------HSFB2a(1) --------YAB1        --------------->AtSPL8  <---------TOE2(3) <---------WOX13(1)<---------GLK1(1)   tctgaatgtgtggttgatttttgttcgtacactttactttgatcgattaggtttatgtatagttaattgaaattttttggaagatttcagaagaagaaga  8898200                                              <-------TEIL           <---------MYB52(1)              <------ZmHOX2a(1)          --------->LBD16             -------->HAHB4         --------->ANAC46             --------->YAB1         --------->TOE2(3)           <---------YAB1                       <---------ANAC58         --------->ANAC55(2)       ------>MYB83              ---------->DOF2     <------NtERF2         <---------ANAC55(2)       ------>MYB46(1)    <---------YAB1      <---------ANAC58      --------->GLK1(2)          <---------MYB59    --------->YAB1    <----------DOF2             <--   gaagaaacaatccgtaatctagacccttgaattgacctaataataggatacatatgatgactatgaagcagtctttgagtggcagggttcttaggggggt  8898300                                              ---------->DOF2                         --------->ARR14(2)                                       --------->LBD16                                ------->TEIL                                      --------->HSFB2a(2)                             <---------ARR14(2)                                      <---------HSFB2a(2)                            <---------CCA1(2)                                     <---------ANAC46                            <---------ANAC58                                     <---------ANAC58                            <---------ANAC58                                     <---------ANAC58                        <------MYB46(1)                                <----------DOF2         <-------TEIL         <------MYB83                      <----------DOF2<---------LBD16  --------->ARR14(2) <---------ZAT2 --------DOF2   <------ZmHOX2a(1)   <---------LBD16   <---------ARR14(2)--------->ARR11(3)   ctttggtatctatctgtaggagggcttttaggtgctgtttcgggagattaaagccagattcaaggtgagtctgagagcttggttcttgtatcttcttgtt  8898400  Previous    Next  AGI:  At5g25560.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G22920.1); similar to unknown [Populus trichocarpa] (GB:ABK94674.1); contains InterPro domain Zinc finger, CHY-type; (InterPro:IPR008913); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 8897904    to: 8901707    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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