Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           ------->TEIL                                                                                         <-------TEIL                                                                                         --------->SPL7                                                                                         <---------TOE2(2)                                                                                       <---------SPL7                                                                                       --------->TOE1(2)                                                                    <---------ANAC58  <---------ANAC58                                                          --------->AHL20(2)          --------->ANAC55(2)                                                    <---------AHL20(2)                <---------ANAC58                                                   --------->AHL20(2)       --------->AHL20(2)  <----                                                   <---------AHL20(2)    <---------ANAC46<---------TOE1(2)                                                --------->ATHB12   <---------TOE2(3)  <---------ANAC55(2)           <---------YAB1                      <---------YAB1 --------->AHL20(2)     <---------------AtSPL8          <---------AHL20(2)       --------->YAB1 <---------WOX13(1)<---------ANAC58 <-------TEIL   <---------LBD16           --------->GLK1(2) --------->ICU4<---------AHL20(1)      --------------->AtSPL3 -------AHL20(2)         --------->YAB1   <---------ANAC55(2)<---------AHL20(2)  <---------ICU4 ===== ->LBD16 --------->YAB1 <---------YAB1    --------->ANAC55(2)--------->AHL20(1)  <---------------AtSPL3   ttaaactcggattataatttggcactataataatctattagaatacgtcttgattaattttaaaatatttaggtgtcttaaaataagtacgtacgttgat  8876100                                                                    --------->ANAC58                                                                    --------->ANAC58                       <---------ANAC55(2)                          --------->ANAC46                       --------->ANAC58                           <---------TGA2(2)                       --------->ANAC58                        <---------ZAT2                <---------At4g35610                            --------->At4g35610           --------             <-------TEIL                                      <---------At4g35610         >>>>>>>>>RAP2.2        --------->CCA1(2)                     --------->ICU4   --------->ZAT2            <---------ARR11(3)       --------->ARR11(3)                   --------------->AGL15----------->TGA1        --------->ARR11(3)       <---------ARR11(3)--------->AHL20(2)----------------->AGL2----------->HVH21      --------->GLK1(1) -----------AGL15  <-----------HVH21<---------AHL20(2)<----------DOF2                   <---------CCA1(2) ===========================================================MADS_MADS          --------->MYB52(1) <--   aaatatggagatatatacatctgtcaagtaaatggtattgaatttgccagtattagcttttgtgaagctgacgcaaaatgaaaacggctgatatctaaag  8876200                                                       --------->AHL20(2)                                                       <---------AHL20(2)                                                      --------->AHL20(2)                                                      <---------AHL20(2)                                                      <---------AHL20(1)                                                      --------->AHL20(1)                                                     --------->AHL20(2)                                               --------->YAB1                                               ----------->GT1                                              --------->ICU4                                              ----------->GT1                                        <---------HSFC1(1)         ------>ZmHOX2a(1)                                        <---------HSFB2a(2) ---------->DOF2                  --------                                        --------->HSFC1(1)<---------AHL20(2)          --------->AHL20(2)                                        --------->HSFB2a(2)<---------AHL20(2)       >>>>>>>>>GATA-1 <-----------GT1                    <---------ANAC46 <---------AHL20(2)           ----------->GT1 -->DOF2                            <---------PCF2<---------AHL20(2)         <---------AHL20(2) --------DOF2 <----------DOF2     <---------ZAT18 --------->AHL20(2)         --------->AHL20(2)  <---   ctttaaccttgtgtttcttttttttgtttaaaatagtggggtctagaaatgataaattaatttaaagtcctcgatatatataaatagataaatttgtttc  8876300                        --------->GLK1(1)                   --------->LBD16                  <---------ANAC46                 <---------LBD16              <-------TEIL        <---------TOE2(3)                  --------->GLK1(1)            ----------->GT1 -->ID1--------->MYB52(1)        --------->TOE2(3)      <---------REM1(1)                  --------->TOE1(3) -------DOF2    --------->MYB52(1)  ---------->DOF2---------->DOF2    ---------->DOF2      --------->TOE2(3)   ttttgggaataacgtagtttacggagaaacccaaatgttaaagggaaatgcattaaagctgtagcaaaataagaaagtaaaaaccaattgaaaccctaat  8876400                                                                   <---------------AtSPL8                                                                   --------------->AtSPL8                                                            <------------CBF                           <---------TOE2(3)              <---------AHL20(2)                         ---------->DOF2                  <---------ARR11(3)                      <-------GAMYB                       --------->AHL20(1)                     <---------MYB46(3)                  --------->AHL20(2)                    <---------MYB55(1)               <---------AHL20(2)                    <--------P                 ---------->ID1      <---------------AtSPL3 <---------ARR11(3)                   <---------MYB52(1)      <----------DOF2--------->AHL20(2)              --------->ARR11(3)                   <-------GAMYB          <---------ANAC58<---------AHL20(1)             *TSS                  --------->LBD16         <---------ANAC58--------->ARR11(3)        --------->YAB1                 --------->LBD16     <----------DOF2 ----------->TBP          <---------ALFIN1      <                <---------LBD16     <---------DAG2   --------->AHL20(2)    --------->MYB46(3)   -----   ttcacttcaaaaaatgttcccggttgttaaaggaagggccttttgctttgtccatataaatatattgtgagagtacaacaacaccttcataagctcttac  8876500                                                  --------->AHL20(2)                                         --------->YAB1                                         <---------ICU4                                        <---------YAB1                  <---------ANAC58      --------->ICU4                  <---------ANAC58      <---------ATHB12                         <----------DOF2 ---------ICU4   ---------->ID1    --------->ANAC55(2)                 --------->CCA1(2) ---->ZAT6   <----------DOF2     <-----------RAV1(2)        <-------TEIL<-------TEIL     <---------ANAC46   actcatttcaactctctttttcgtttccattaccctcaggtaatcataacatatatataagttacatttgtagatacatatgtctttagttttgtgtaat  8876600             <---------AHL20(2)           <---------YAB1         --------->YAB1         <---------AHL20(2)         -------->ATHB1         <---------ICU4         --------->ATHB51         -------->HAHB4         <--------HAHB4                                                         --------->AtMYB61        <---------ATHB51                                                        --------->TOE2(3)        <---------YAB1                                     <---------ARR14(2)  --------->bZIP60(2)        --------->ICU4                                     --------->ARR14(2) ------>NtERF2     <---------AHL20(2)                           <------NtERF2              <---------ALFIN1     --------->AHL20(2)      <---------HSFB2a(2) --------->LBD16            --------->MYB46(3)<------ZmHOX2a(1)   --------->ANAC55(2)       --------->HSFB2a(2) <------NtERF2     --------->ARR14(2)     --------->LBD16   <---------ANAC55(2)     <---------ANAC46     <---------LBD16    <---------GLK1(2)     <---------HSFB2a(2) <-----------GT1           <---------REM1(1)   <---------LBD16     <---------ARR14(2)    --------->HSFB2a(2)   ttgttacttaattattattttctatggtgttgtagaagaagatgaataggccgggagattggaactgcagattgtgtagccacctcaacttccagaggag  8876700                                                                             <--------P                                                                         --------->SPL7                                                                        <---------MYB52(1)                                                                       <-----------HVH21                                                                       <---------RAP2.6(3)                                                                       <---------SPL7                                                                    <------NtERF2                                                               <---------AtMYB61                                                            <---------ARR14(2)                                                            --------->ARR14(2) --------->MYB52(2)                                                        <---------At4g35610  <---------MYB52(1)                                      <------ZmHOX2a(2) --------->At4g35610 <---------MYB52(1)    --------->AtLEC2               <------NtERF2      ---------->CDC5--------->ATERF1(1)           <- <-------TEIL             <---------WRKY18(1)     <-----------GT1 <---------RAP2.6(2)   ------>ZmHOX2a(1)   ggattcatgccaacgttgtagagagcctagaccgggcgggatcagtaccgatttactcagcggttttggtggccgtccggttagtagctccttcggtttc  8876800                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  <--                            <------MYB46(1)                                                      ----                            <------MYB83                                                         <---                          <---------WOX13(1)                                                   <-----                         <---------ARR14(2)                                                  <-------                      --------->LBD16                                                        <-------                     --------->LBD16                                                        <--------                     <---------LBD16                                                        ---------             --------->ALFIN1                            <---------ANAC55(2)                <--------     ------>NtERF2  <---------LBD16                      --------->ANAC55(2)               <---------ZAT14   --------->LBD16 <---------LBD16                   <---------PCF2          <-----------RAV1(2)----- <---------LBD16<---------PCF2                      ----------->HVH21        ======================== --------ALFIN1----------->HVH21                --------->ALFIN1            <-------TEIL  --------->ALFIN1   aacaccgggcccgatgtgcgacccggggattggtattgcaaccttggggattgtgggacacataattttgccaataggtccagttgtttcaagtgtggtg  8876900                                                                                                <----                                                                                                -----                                        =========================================MYC_MYB       ------                                        ------->GAMYB                  --------->TGA1a        XXXXXXX                                       <---------LBD16                 <---------ANAC46      --------                                      -------->P                       <---------O2          <------NtERF2  ---------->DOF2                     --------->MYB52(1)               <---------ANAC58      -------- ------->LBD16                        ===========================================MYC_MYB    <-------- ---->NtERF2                         ------->GAMYB                     --------->O2         ------>NtERF2 ------>RAP2.3(2)                    --------->MYB55(1)                =================bZIP_DOF<---- ------>RAP2.6(2)                    ============================================MYC_MYB   <---------DEAR3(1) -------ANAC46                      <---------MYB111(2)                =================bZIP_DOF<---- ----->RAP2.3(1)                    --------->MYB46(3)                 <---------ANAC58    <---------RAP2.6(2) ---NtERF2                          <---------MYB55(2)                 <---------TGA1a     <---------ATERF1(2) ----PCF2                           <---------MYB52(2)             <---------HSFB2a(2)     --------->ATERF1(2) --ANAC58                         ----------->RAV1(1)         <------MYB46(1) <---------DAG2<-------- --ANAC58                    <---------ZAT2                   <------MYB83    <----------DOF2<------- -AtMYB61                    <---------At4g35610          <-----------RAV1(1)<----------DOF2<-------- >ALFIN1                     --------->At4g35610      <---------YAB1----------->HVH21      <---------RAP2.3(3) ---RAV1(1)                  --------->ZAT2 <----------DOF2   <---------MYB46(3)           <---------RAP2.3(2) ->NtERF2                <-----------RAV1(1)=====================================bZIP_DOF --------->RAP2.6(3) ===RAV                  --------->ALFIN1--------->LBD16 ------->TEIL  <---------bZIP60(2)<---------LBD16   ccgcaaaagatgagttttcatgctcaagtgctgctgcaacaaccgggtttatggacatgaatgttggtccgagacgtggcctttttggttttggcggcag  8877000  Previous    Next  AGI:  At5g25490.1    Description:  zinc finger (Ran-binding) family protein. similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT3G15680.1); similar to unknown [Populus trichocarpa] (GB:ABK92945.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) Range:  from: 8876489    to: 8877818    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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