Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          --------->TOE2(3)                   ------->MYC3         --------->TOE1(3)                                           <       <---------ICU4                <-----------GT1                                                <       --------->ATHB12       <---------YAB1                                                     <---       <--------ATHB1      --------->ICU4                                                      <-----       --------->ATHB51    <---------YAB1                           <---------MYB59          <-------      <---------AHL20(2) <---------bZIP60(1)                  <------MYB83                   <-------      <---------ATHB51   --------->bZIP60(1)                  <------MYB46(1)           --------->ATHB12 --->ZAT6          <-------MYC3  <---------YAB1           ------->TEIL  --------->ARR14(2)  <-------- ----GT1  --------->AHL20(2)<---------ICU4          <---------AHL20(2)  <---------ARR14(2)<---------WOX13(1)   gtatatgaataattgaatacacatgggacatcattatagttaccttagtacgattttatgcatttggttaccaaaatccactaggcttcgtaattggttg  8820100 ---------PCF2                                             ------>ZmHOX2a(2) -----------HVH21                                        <---------ARR11(3) ------ANAC46                                        <---------ANAC55(2) ----MYB46(3)                                        --------->ANAC55(2) --ANAC58                                      --------->At5g28300                                 -- --ANAC58               <----------DOF2       ----------->GT1                                      -- -MYB46(3)     <---------MYB52(1)      --------------->AGL15              --------->YAB1         <---   tgggtcagtgtccattcgatagtttgcattagcgataaacacttaaaacagtaaaacgtgatctatttttaaacaataacatttcttcttatcaaatatt  8820200       <---------TOE2(3)     --------->AHL20(2)     <---------AHL20(2)                                                                      <-------    <---------YAB1                                                                      <---------ANAC55(2)  <---------ICU4               --------->ANAC58                                    <---------bZIP60(1) --------->ICU4            --------->ATHB12   --------->YAB1                       --------->bZIP60(1) ------->ANAC46    --------->CCA1(2)         <---------YAB1         <---------AtLEC2    --------->ANAC55(2) ------->ANAC55(2)<----------ID1     --------->YAB1       <---------YAB1        ----------->HVH21 --------GT1  ---------->DOF2  --------->ANAC58          >>>>>>>>>>>>>>>>>LFY --------->At4g35610----   cacataattaatgaagaaaagagacgaattgataggcaataagaaatatgatcacttggtaccattgtatgcatggtatgaactgacatcaagtatttgt  8820300                 <---------TOE2(3)                 <---------YAB1              <---------YAB1            --------->ATHB51            <--------HAHB4            <---------ICU4            -------->ATHB1            <---------AHL20(2)            -------->HAHB4            --------->YAB1           <---------ATHB51           <---------YAB1                                                                          <-      ----------->GT1                <---------YAB1                                             <---- <---------REM1(1)                 --------->YAB1        ----------->GT1                        <---- --------AtSPL8 <-----------GT1  --------->ANAC58    <------ZmHOX2a(1)                        ------- --->TEIL  --------->ICU4        --------->ANAC58---------->DOF2                              <------   acgttgtagggtaattattaacattgtagaatgacaagtatgatcaaatggaaaaggattagttatatgtagcaaaactagtatttgtacttggactatc  8820400                                                                                                 ----                                                                                                -----                                                                                           --------->ALFIN1                                                                                          --------->TOE1(2)                                                                                          ------->PIF5                                                                                          <-------PIF5                                                          <---------------AtSPL8         ============                                               --------->ANAC55(1)                       ============                              ------------>CBF --------->ANAC55(2)                       <---------ANAC58                          <---------AHL20(2)   <---------ANAC55(2)                       --------->TGA1a                        ----------->TBP        --------->ANAC58                          <---------TGA1a                      ----------->TBP          --------->ANAC58       --------->AHL20(2) <---------O2 ----------HVH21 --------->ANAC58              --------->ANAC46       ----------->TBP    <---------ANAC58 -----ANAC58     --------->ZAT6               <---------LBD16     ------------>CBF       <---------ANAC46 -----ANAC58     --------->ANAC58         ----------->HVH21 <---------ZAT18              <---------bZIP60(2) -->ARR11(3)   --------->MYB52(1)     ------->GAMYB     --------->CCA1(2)               <------------ ---ARR11(3)  ------>ZmHOX2a(1)   <---------ATHB12    --------->CCA1(2)--------->YAB1  <------ZmHOX2a(1)   ttgtcatgtagttttcctaacgctatatataatccaataaccccatgacacggaagagataggggacatacaataaatatcagtagagaggacgtgggaa  8820500                                               --------->GLK1(2)          <---------ANAC55(2)                 <---------ARR14(2)        <---------ZAT14                       <---------GLK1(2)     <---------ZAT6               ==================HOX2a_HOX2a     *TSS --------->ANAC55(2)     <------ZmHOX2a(2) ----->DAG2                      <---------ARR11(3)                                      <-----------HVH21 ----->DOF2                      --------->ARR11(3)                            --------->TOE2(3) ======bZIP_DOF  <---------MYB46(3)           --------->ARR14(2)  <---------DAG2      <---------ANAC58 ======bZIP_DOF  --------->MYB111(1)   --------->CCA1(2) <---------ALFIN1  ------>ZmHOX2a(1) -----------TaNAC69(2)       ---------->DOF2 <------ZmHOX2a(1)    <----------DOF2     <---------ANAC58   aagcagagagttaagtgagtagttggagatagaaagatcagagacgaggaatctctctcccactctcactttctctcctattcttagttcgtgtcagaaa  8820600                                                                      ------>NtERF2                                                                     --------->DEAR3(1)                                                                   ------>NtERF2                                                                   <------NtERF2                                                                  --------->ANAC58                                                                  --------->ANAC46                                                                  --------->ANAC58                                                                 --------->SPL7                                                                 --------->ZAT18         <---------ANAC58                                                                --------->ATERF1(1)     <---------TOE1(2)                                                               <-----------HVH21     <---------ANAC58                                                          --------->LBD16          <---------ARR14(2)                                                         <---------TOE1(1)       <---------ANAC58                                                         <---------ANAC46        <---------ANAC58                                                      --------->ARR14(2)    --------->MYB52(2)                                                      <---------ARR14(2)   <-----------RAV1(2)                                                     --------->HSFC1(2)  <-----------TGA1<---------ANAC58                       --------->AHL20(2) <---------HSFB2a(1) --------->ALFIN1--------->ALFIN1     <-                       <---------AHL20(2)<-------TEIL<---------HSFC1(2)<------NtERF2 <---------ANAC58                 --------->TOE2(3)    ----------->GT1<---------HSFB2a(1) <-----------HVH21 <---------GLK1(1)   cacacagagaaattaagaaccctaatttaaaacagaagaatggtacattcgaagaagttccgaggtgtccgccagcgtcagtggggttcttgggtttctg  8820700                                                        ----------->GT1                                                     ----------->RAV1(1)          ------>ZmHOX2a(1)             <---------------AGL15   <-----------TGA1                     --------------->AGL15                                 <------ <-------TEIL         --------->ZAT14  ----------------->AGL3                     --------->AtLEC2<-- --------GLK1(2)<-----------HVH21      <-----------------AGL3                  <-------TEIL   <------   agattcgtcatcctctcttgtcagttctctctccctctctatctattaatagagacaacagtataaatctgtttatgcaagtccatgctatgagttaagt  8820800                     <---------ZAT18                 --------->ALFIN1                --------->REM1(2)                                                  ------->TEIL               --------->ALFIN1           --------->AHL20(1)                --------->ARR11(3)             <---------ANAC46             <---------AHL20(1)             --------->YAB1          <---------SPL7                  <---------AHL20(2)            <---------YAB1        <---------------AtSPL3           --------->AHL20(2)       --------->ARR11(3)       <---------ANAC46               --------->YAB1              <---------ARR11(3) ---TOE1(3)  <---------ANAC58     <---------ICU4              ---------->DOF2   --------->AtLEC2 ---------GT1<---------ANAC58     --------->ATHB12         --------->AtLEC2 <---------ARR11(3) ---TOE2(3) ------->TEIL         <---------YAB1         <-------TEIL  --------->YAB1   ttacatttttggtgtacgtgtagggcagttttctgatcattgattatattttcgaagattcatgcaaagctcttataatatcatgcatttttgtttaagt  8820900                                <-------MYC3                                                    <----                                ------->MYC3                                                    -----                              <---------TOE2(2)                    <---------DAG2               <----                    --------->AHL20(2)                             <----------DOF2              -----                    --------->YAB1                              ---------->ID1                -------                   <---------ATHB12     <---------TOE2(3)       <-----------GT1               <------             <-----------GT1  <---------TOE1(2)              --------------->AtSPL8          <-------          <---------AHL20(2) <---------ALFIN1              <---------ARR14(2)                <-------     ------>ZmHOX2a(1)      --------->TOE2(2)           <---------ANAC46 <-----------RAV1(1) <-------    --------->TOE2(3)       --------->TOE1(2) <-------TEIL --------->ARR14(2)              <---------YAB1   cgttttccttatttttttccaattaaaaaacccacgtttattaacatatacatatgttgagtatttgtactttttgtgttgtattttgaaattttgagtg  8821000  Previous    Next  AGI:  At5g25390.1    Description:  SHN2 (SHINE2); DNA binding / transcription factor. Identical to Ethylene-responsive transcription factor SHINE 3 (SHN3) [Arabidopsis Thaliana] (GB:Q3E958;GB:Q8GWK8); similar to SHN3 (SHINE3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G11190.1); similar to unknown [Populus trichocarpa] (GB:ABK95171.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471) Range:  from: 8820505    to: 8821992    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version