Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            ---------->ID1                                  <----------DOF2        <-----------GT1                              --------->ZAT18        <---------AHL20(2)                              <---------ZAT14    <---------ICU4    ------>ZmHOX2a(1)         <---------ZAT18   --------->ICU4                                    ---    <----------DOF2       --------------->AtSPL8<---------YAB1    <----------DOF2       ----------->HVH21   --------->TOE2(3)     <---------ANAC46   <XXXXXXXXXXXXXXXXXXXXMIR3933              --------->At4g35610 ---DOF2      --------->ICU4  --------->ZAT14 --------->YAB1<----------DOF2           <---------At4g35610   tgcatcctttgtggtgattcttaagagacttgtacactttctccctagtcatcattttttttctttttcttttgaaaacagttttgggacctgaaggctc  8779900                                                                                        --------->AHL20(2)                                                                                        <---------AHL20(2)                                                                                       --------->AHL20(2)                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                                    --------->ICU4                                                                               <------NtERF2                                                                               ----------->GT1                                                                             --------->ETT(1)                                                                             <---------LBD16                                                                            <---------LBD16                                                                            <---------ANAC46         <---------ICU4                                                --------->MYB52(2) <---------TOE2(3)         --------->YAB1                      --------->TOE2(3) --------->ZAT14------>NtERF2      --------->WOX13(1)            --------->WOX13(1)         <---------ZAT14--------->LBD16    <---------YAB1              --------->YAB1<---------YAB1 --------->ANAC58<---------ANAC46 --->ZmHOX2a(1)   --------->At5g28300  --------->YAB1        --------->ANAC58--------->LBD16       <-   ctagttatcaatcttgacatggtgaatgaaacatttataaatcaaaacattataaacatagacactgaactattagttgccgggaaaaaattaatatttg  8780000                      --------->MYB52(2)              --------->WOX13(1)                                                    <-----------GT1            ------------>CBF                                               ----------->GT1       <---------AHL20(2)                                                 ----------->GT1       --------->AHL20(2)                                               ---------->DOF2      --------->AHL20(2)                                           <---------At4g35610            ---  <---------AHL20(2)<---------MYB52(1)                             --------->At4g35610            --- -----------CBF <---------ATHB12     <----------DOF2        --------->MYB52(1)--------->AHL20(2)  ---   atattgaatttaaaaacaatcagttagtttctatagactctttccatgttcaacatggaacacaagggaagcagaaaagataaattttaccaagttgttt  8780100                          ------>MYB46(1)                     <-----------GT1                  <---------REM1(1)                <------MYB46(1)                <---------ANAC46                <---------ANAC58                                     <---------ANAC58                <---------ANAC58                                     <---------ANAC58                <------MYB83                                     <---------ANAC58               <---------AtMYB61<---------YAB1                 <---------MYB46(3)            --------->ATHB12    ------------>CBF             <---------ANAC58         <----------DOF2          <---------WOX13(1) <-------TEIL                    <---------ANAC58        <---------DAG2         <------------CBF ------>MYB83                       <-------GAMYB        --------->REM1(1)        --------->ATHB12<---------MYB59                     <---------MYB46(3)    <-----------GT1 ------>ANAC58 --------->MYB46(2)                      --------->ARR11(3)       <-----------GT1 ------>ANAC46 <---------MYB46(3)                      <---------ARR11(3) <----------DOF2 <---------At5g28300 ------>ANAC58 --------->MYB111(1)               <-----------GT1 <---------ANAC58 <---------ALFIN1   acgcaaaaactgattgtttggtgtaaccaaattcatcaatgacaccaaaatttacattatcttggttgtttgcttacttttgttacacctttcactgtcc  8780200                                                                                               ------                                                                                               ======                                                                                               ======              <---------ANAC58         <---------ANAC46                            <-----------HVH21              <---------ANAC58         <---------ANAC58                         <---------MYB52(1)  ------------>CBF       ------------>CBF           ---------->DOF2            --------->At4g35610 <-----------GT1   <----------DOF2     <---------ANAC58                        <---------At4g35610   atttctcaattctatttcttacttttgatcaatgttatatttcttgaagcaaataaaagcatggatactactaattctagccgctggtcagagcttccta  8780300                       --------->HSFB2a(1)                       <---------HSFB2a(1)                  <---------HSFB2a(2)                  ------>ZmHOX2a(1)                          <---------TOE1(2)               <-------                  --------->HSFB2a(2)                     ------>ZmHOX2a(2)                  <-------            =============HOX2a_HOX2a                      <---------ANAC58                   --------           <------ZmHOX2a(2)                              <---------ANAC58                   <-------           <---------GLK1(1)                             <------ZmHOX2a(2)                   --------           ==============HOX2a_HOX2a                    --------->ARR11(3)                   --------           --------->GLK1(1)                            <---------ARR11(3)                   --------          --------->ARR11(3)                    <---------ZAT18                             ---------          <---------ARR11(3)                   --------->DEAR3(1)                           <--------  --------->ARR11(3)  <---------TOE1(2)      <---------At5g28300                            <-------- >ZmHOX2a(1)------>ZmHOX2a(2)               <-----------GT1 <---------ANAC46              --------->WOX13(1) =================HOX2a_HOX2a<---------TOE2(3)--------->ANAC46                <---------ANAC58 ==================HOX2a_HOX2a      ---------->ID1    ----------->ARR10       <---------ANAC58   tagacatcttgagatctctcctcgaacgtttgagatttgtcgattttcaccgcgctaagatcgtgtgttcgtattggtattcgtgttcaaaacaatcatt  8780400                                               <-------GAMYB                                              --------->MYB55(2)                                             --------->ALFIN1 --------->ANAC58                         --------->DAG2 --------->ANAC58                        --------->DAG2 -----ATHB5                             ---------->DOF2 -ATHB1                             --------->LBD16 ->YAB1                            --------->HSFC1(1) --ICU4                            <---------HSFC1(1)                         --------->ICU4 >ATHB1                            <---------HSFB2a(2)                      ---------->DOF2 ->ATHB51        <---------AtLEC2  --------------->AGL15            --------->SPL7 ->ATHB12     ------>ZmHOX2a(2)    --------->HSFB2a(2)            --------->LBD16 >ICU4       --------->GLK1(1)    ----------------->AGL3      -------->P------->TEIL -ATHB12    <---------ARR11(3) <----------DOF2<---------MYB46(3)<---------LBD16<---------ICU4-------- -YAB1  ----------->RAV1(2)  <---------------AGL15        <-----------GT1--------->At4g35610---------   gctacgaaaaacctgatctccatggctaattctctttccagaaaaaggtggttgtgctatatacaacccggacgaagctaaagattacaaaacaaaaaga  8780500              <---------GLK1(2)                      --------->GLK1(2)                              <   ------>ZmHOX2a(1)            <---------ZAT14     --------->ARR14(2)                             -- ->DAG2  <---------ARR14(2)     --------->ZAT14     <---------ARR14(2)    --------->YAB1           <- ->DOF2  --------->ARR14(2)    <---------MYB52(1)   <---------GLK1(2)    <---------YAB1        ------   gactcctcagggattcgattcttggcaaactcagttaactggttcttggtgctagattctcgttccaatctctatatcatagatgtgtttagcgagaaaa  8780600                                                                                            <--------                                                                                           <--------P                                                                                         --------->YAB1                                                                                        <---------YAB1         <---------ALFIN1                                                             <--------ATHB1     ------>ZmHOX2a(2)                                                                --------->YAB1   <---------ARR11(3)                                                                 <---------ICU4   --------->ARR11(3)                                                                <---------ATHB51 ------ZmHOX2a(2)                   <----------DOF2                                  <---------ATHB12 ------->ARR11(3)        --------->YAB1                       ---------->DOF2        --------->ICU4 --------ARR11(3)       <---------ATHB12                   ----------->GT1       <-------TEIL ---->DOF2            --------->WOX13(1)                 <------ZmHOX2a(1)      --------->GLK1(2)   agatcgatcttccacccctagaatcaatcaagaatggcctttatagtcttgagcaagtaggaggtaaagcatttaaggcgagattcaataatggtagttc  8780700                          ------>ZmHOX2a(2)                         --------->CCA1(2)                        --------->AGP1                        --------->ARR11(3)                        --------->ARR14(2)                 <---------LBD16              ---------->DOF2    <---------ARR11(3)           --------->ANAC55(2)   --------->ARR11(3)    <-----------GT1     <---------ARR11(3) --------->ARR11(3)     <---------AGP1                                       <---------AtMYB61   <--- <---------ARR11(3)     <---------ARR14(2)                             --------->ZAT14         ------ --------->AHL20(1)--------->LBD16  <----------DOF2        ---------->DOF2 <---------ANAC46<--------- -MYB46(3) --------->YAB1<------ZmHOX2a(2)            ----------->GT1  <---------ZAT14   ---------->DOF2   atatatattccatacataatgcggaagatctatgaggtcttttatgggtagacgagaagaaaaaagaatacattgtagtgtggtttttcgacaaaggtac  8780800  Previous    Next  AGI:  At5g25300.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G25290.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 8780261    to: 8782847    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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