Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         ------>MYB46(1)                                                       -------->P                                                     <---------MYB111(2)                                                     --------->MYB46(3)                                                     <---------MYB111(1)                                                     --------->AtMYB61                                                     <---------MYB55(2)                                                    --------->MYB46(3)                                                   ------>MYB46(1)                                                   ------>MYB83                                                  --------->ANAC46                                                 <---------MYB111(2)                 ------>MYB46(1)                                                 --------->MYB46(3)          <----------DOF2                                                 <---------MYB55(2)       <---------ARR11(3)                                                 --------->DEAR3(1)       --------->ARR11(3)                                                --------->ANAC58         <------MYB46(1)                                                --------->ANAC58         <------MYB83------>MYB83                                              <-----------GT1    ----------------->AGL1                                         <-------GAMYB ------>MYB83     --------->MYB59     ---------   <---------ANAC46     --------->ARR11(3)<---------MYB52(1)   --------->ANAC58    --------->MYB46(3) ------AtMYB61         --------->YAB1 <---------At5g28300      --------->ANAC58 <-----------GT1------   tggtctcttggacgatgcttcacagtgatattcaaaagtttaccgttatcacccaccaactagagaagccaaattaggtcttttaccaactgtagggtaa  8739300                            <---------ALFIN1                            --------->AtMYB61                           --------->MYB46(3)                         --------->AtMYB61                         ------->GAMYB                         --------->ANAC46                        --------->MYB46(3)                      <-----------GT1                   --------->YAB1                   <---------ICU4                  <---------YAB1                <---------ICU4                <--------HAHB4                                                    <---------LBD16                --------->YAB1                                                  -------->P<---------ANAC58               <---------ATHB12                                             <-----------GT1               --------->ICU4               <----------DOF2         <----------DOF2 --------->LBD16 -->GT1        <---------YAB1            <---------YAB1           --------->At4g35610     <---------ANAC58 ---->DOF2--------->ANAC55(2)  <---------ALFIN1      <<<<<<<<<TBF1<---------At4g35610 <----------DOF2   agaactgtcttcatgtaatcattataaccaccaccatcttgttatgctttgtttcttcttcaaattgcagctttcaatatacaacccggtttacgttctg  8739400                                              <------------CBF                                            --------->ARR11(3)                                            --------->ARR14(2)    >>>>>>>>>RAP2.2                                            <---------ARR14(2)    --------->TOE2(3)                 <                                      ----------->HVH21      ------------>CBF                       -                           <------------CBF <---------ARR11(3) --------->WOX13(1)            --------               ------------>CBF      <---------WOX13(1)      <---------ATHB12 <----------DOF2<-------     <----------DOF2 <-----------GT1<------------CBF----------->RAV1(2)   --------->ZAT18---------->DOF2   gtttacactttagacgtttcaatttacaaaattgggccgattgacagatattggacctggcccatcaatctaaaaatgcgctattttgaatcaaagacct  8739500                                                                       --------->LBD16                                                                      --------->ANAC46                                                                      --------->ANAC58                                                                      --------->ANAC58                                                                     <---------LBD16                                                                     ------->GAMYB             ------                                                                   ------>MYB46(1)             ------                                                                   ------>MYB83               <------                                                                   -------->P                 -------                ------>NtERF2                                   --------->ATERF1(1)           -------                <---------ATERF1(1)                     ----------->HVH21                    --------   <---------ARR11(3)                                  <-----------HVH21                     --------   --------->ARR11(3)                          <---------MYB52(2)--------->DEAR3(1)          --------  <---------CCA1(2)                           <------NtERF2--------->ANAC46                <---------ALFIN1 ---------AHL20(2)                           ------>NtERF2 --------->ANAC55(2)        <----------DOF2 -------->AHL20(2)     <-----------HVH21    <---------ETT(2)   ------>NtERF2         <---------ANAC58 ->ARR11(3)  ------>NtERF2                  <----------ID1 <---------ANAC55(2)       <---------ANAC58 --ARR11(3) --------->DEAR3(1)           --------->ALFIN1 <---------LBD16       ------>ZmHOX2a(1)   atttaaatcttccgacgacgactccgttcacatagcagaaacagtggcgacaaaccctatcacggagccaacccgcattttcctctagctttcgcaccgc  8739600                                                                                                  ---                                                                                                <----                                                                                                =====                                                                                                <----                                                                                                -----                                                                                                <----                     <-------TEIL                                                               -----                    <---------ARR14(2)                                                          -----                    --------->ARR14(2)                                                          -----                   <---------MYB52(1)                                 <---------ANAC58          ===== >NtERF2       ------>NtERF2                         <---------MYB52(1)                         ----- --->ABI4(1)   --------->MYB52(1)                   <-------GAMYB  <---------WOX13(1)         <------ ---ALFIN1    <---------ALFIN1                      <---------RAP2.6(3)                     >>>>>>>>>WRKY18 -->DREB2C(2)--------->MYB46(3)            --------->ATHB12       <------------CBF         ---------- -->DEAR3(1) ----------->HVH21           <----------DOF2         --------->ATHB12      <---------DAG2 ->ORA47(2) --------->DEAR3(1)          <---------ANAC58        <---------YAB1         <----------DOF2 ->DEAR3(2)--------->PCF2               <---------ANAC58     --------->GLK1(2)     --------->GLK1(2) ->DEAR4(2)--------->ANAC46 ----------->HVH21      <---------MYB46(3) <---------ANAC58 ==============   ctctcgctctctcgccccaccggttcgtctctgacattttgtgcttgatttggccgttacaaaattctgattgctagttcatgagattcctttttgacag  8739700    ---------->DOF2 -------->HVH21 -----O2 ========================MYC_MYB                                                                    - -----ANAC55(2)                                                                                     < ---->O2                                                                                            < -----At4g35610                  <---------ZAT14                                                   <- ---->TGA1a                      --------->ZAT18                                                   <- ---->At4g35610    <---------ANAC46                                                                -- ------>GT1        <---------ANAC58                                                   <---------ZAT14 ==============bZIP_DOF         --------->ALFIN1                                --------->YAB1     -- ---->ANAC55(2)    <---------ANAC58----------->GT1              ----------->HVH21     --------->ZAT14 -----RAV1(2)   <--------P    <---------ANAC58                <---------At4g35610    <---------ZAT6-- ->HVH21      <------MYB46(1) <---------ANAC46               ------->TEIL      <---------YAB1      <- =====bZIP_DOF<------MYB83    <---------ANAC58     --------->TOE1(2)         --------->YAB1        <-   gtgacataaagatggatggtagcttgtatggtgagtgtggtaactatattggacctgagattgaatctgacagagatagtgatgatagtgtagaagatga  8739800            --------->ALFIN1          ----------->RAV1(2) ------>ZmHOX2a(2) -------->GLK1(1) ---------GLK1(1) ------ZmHOX2a(2)                                                        <------ZmHOX2a(1) --------ARR11(3)                                                    --------->LBD16 --------ARR14(3)                                       --------->ARR11(3)     <---------------AtSPL3 ------->ARR14(3)                                       <---------ARR11(3)     --------------->AtSPL8 ------->ARR11(3)                             --------->YAB1         ------>ZmHOX2a(1)              < ------->ARR14(2)                          --------->WOX13(1)      ----------->RAV1(2)            <-- --------ARR14(2)                        <---------YAB1 <---------AHL20(1)     <---------------AtSPL8 --------AGP1                       --------->ZAT6      --------->AHL20(1)     --------------->AtSPL3   agatctccaagagcctgggggttctaatggctggattaccactatcaatgagaaccaaaatattgttcttcctgaggataagaagtactaccctattgct  8739900                                                                                             --------                                                              -------->P              --------->CCA1(2)                --------->ARR11(3)<---------TOE2(3)           --------->ANAC58       <---------ARR11(3)    <----------DOF2     --------->ARR11(3)                    --------->ANAC58 <---------MYB52(1)   - ------ZmHOX2a(1)       <---------ARR11(3)     --------->At4g35610    <---------YAB1 --------->ARR11(3) -------TOE2(3)<------ZmHOX2a(1)  <---------YAB1           <---------At4g35610<-----------HVH21  <---   aaggaggtttatggtgaggatgttgagaccttggttatggatgaagatgagcagtctcttgagcaacccattatcaaacccgttagagatattagatttg  8740000                                                                                     --------->HSFB2a(1)                                                                                     <-----------RAV1(1)                                                                                     <---------HSFB2a(1)                                                   --------->RAP2.6(3)            <------ZmHOX2a(1)  <------NtERF2                                <---------ANAC58            <----------DOF2         <- ->CCA1(2)  <---------TOE2(3)          <---------ALFIN1              --------->TOE1(2)          <---- -------->ALFIN1              ------->TEIL     <---------ANAC58      --------->TOE2(2)          ----- ------TOE2(3)  <------ZmHOX2a(2)     <---------ZAT14    <------NtERF2------>ZmHOX2a(1)       <------   aggtgggggtcatcaaggatcaaacaacaacgtatgtgtcaacactgtttcttatcggcctcatgtctaatcctgcgcttgtgaggaatgttgctcttgt  8740100            --------->ANAC46            --------->ANAC58           --------->RAP2.6(3)          <---------ALFIN1         <---------ZAT2                      <---------At4g35610         --------->ZAT2                <------MYB83  ------->TEIL   --------->GLK1(1)                   <---------MYB46(3)                                           <   <---------At4g35610                 <------MYB46(1)                                           ----   --------->At4g35610             <-----------RAV1(1)    <---------TOE1(2)                     <---- --------PCF2                   --------->ARR14(2)--------->ANAC46                      --------->YAB1 -------RAV1(1)            <---------AtLEC2  --------->At4g35610                      --------->ANAC58 ---->ALFIN1--------->ANAC58    <---------ARR14(2)--------->ANAC58                    --------->ANAC58 -----RAV1(1) --------->At5g28300<---------GLK1(1)--------->ANAC58<----------DOF2<----------ID1 -----   ggggcatctccagcacggcaaaactgtcttcatggatatgttggtagagcagacgcatcgtatgtctacttttaatgctgaaaacgacaagcatatgaga  8740200  Previous    Next  AGI:  At5g25230.1    Description:  elongation factor Tu family protein. similar to MEE5 (maternal effect embryo arrest 5), translation elongation factor/ translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G06220.2); similar to MEE5 (maternal effect embryo arrest 5), translation elongation factor/ translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G06220.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ58134.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ65473.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81413.1); contains InterPro domain Translation elongation Range:  from: 8739712    to: 8743597    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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