Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->HSFB2a(2)                 <---------HSFB2a(2)          <---------AHL20(2)         <---------AHL20(1)         --------->AHL20(1)         --------->AHL20(2)                                         --------->ARR11(3)         <---------AHL20(2)                                    --------->AHL20(1)            <-------        --------->AHL20(2)                              --------->YAB1                     --------->YAB1        <---------AHL20(2)                     <---------AHL20(2)   <---------ARR11(3) --------->AHL20(2)     --------->AHL20(2)                   --------->AHL20(1)  --------->YAB1         <---------AHL20(2)     <---------AHL20(2)            <---------AHL20(2)   --------->AHL20(2)       --------->AHL20(2)    --------->AHL20(2)             --------->AHL20(2)  --------->ICU4            <---------AHL20(2)    <---------AHL20(2)        --------->AHL20(1)       <---------YAB1  <----------DOF2 <---------AHL20(2)   ttttttttaaattaattttctaaaaaaacacatatattaaaaaacatattaaaactaattataaacatattatcttttgtgatttatatttttttataat  8735700                         --------->TOE1(3)                  <--------HAHB4                  -------->ATHB1                  --------->ATHB51                  <---------AHL20(2)                  --------->AHL20(2)            <---------ICU4                          <---------AHL20(2)                 --------->ICU4                 --------->YAB1                        <---------YAB1                 <---------ATHB12              <---------ATHB12                     <---------AHL20(2)                 <---------ATHB51              <---------ATHB51      ----------->GT1--------->AHL20(2)              <---------AHL20(2)        <---------AHL20(2)   <---------AHL20(2)    <---------AHL20(2)         <---------ARR11(3)      --------->AHL20(2)       <---------AHL20(2)     <---------ICU4         --------->ARR11(3)      <---------AHL20(2)      <---------ATHB12    --------->AHL20(2)        --------->YAB1   --------->YAB1 --------->AHL20(2)--------->AHL20(2) <---------AHL20(2) --YAB1<---------ATHB12  --------->TOE2(3) <---------YAB1--------->AHL20(2) --------->AHL20(2)   tctaaaccaatgatattcaattatttatcttaaaattaaaaatttatcaataataactaataaataatgtatagaaaatttaaaaattattttttttaaa  8735800                                                                           <---------ICU4                                                                           -------->HAHB4                                                                           <--------ATHB1                                                             <---------AHL20(2)     --------->AHL20(1)                                                             --------->AHL20(2)     <---------AHL20(1)                               <------ZmHOX2a(1)             --------->AHL20(1)     <---------AHL20(2)                <---------AHL20(2)                           <---------AHL20(1)    --------->YAB1                --------->AHL20(2)                          --------->AHL20(2)     --------->AHL20(2)          ------>ZmHOX2a(1)  <---------TOE2(3)   --------->AHL20(2)       <---------ATHB51      <-----------GT1    --------->YAB1          <---------AHL20(2)       --------->ICU4   <---------AHL20(2)   <---------AHL20(2)    <---------ARR11(3)          <---------YAB1  <---------AHL20(1) <---------AHL20(2)       <---------AHL20(1)        --------->YAB1  --------->AHL20(2)--------->AHL20(2)        --------->AHL20(1)       <---------AHL20(2)--------->YAB1  <---------AHL20(2)<---------AHL20(2)        --------->ARR11(3)      --------->AHL20(2)----------->GT1   acaatttttttcctctaaaaaattaaataataaggaatagagaaggaatatttttttatctaataaattccatataataattcaattatattgataaata  8735900                                                        --------->At4g35610                                                        --------->ZAT2            <---------ALFIN1                                                        <---------ZAT2          <---------ALFIN1                                         <---------At4g35610                    ----------->RAV1(1)                                         --------->At4g35610                   --------->MYB46(3)  <-                      --------->ICU4     <---------CCA1(2)                    --------->ANAC58    ---                   --------->AHL20(2)<-----------HVH21  <---------At4g35610   --------->ANAC58   ----             ---------->DOF2    <---------AHL20(2)------>ZmHOX2a(2)    --------->ZAT14           <---   ggttgcaaaaaataagaaagaataaatatgagaataaatggtcatctctcgatctctcagctctgtgcaactctgaacacacccacacatatatactcag  8736000                                  --------------->AGL15                                  <---------------AGL15                               <-----------GT1                              <-----------GT1                          -------->ATHB1                          <---------AHL20(2)                          --------->YAB1                          --------->AHL20(2)          --------->ANAC58--------->ATHB51          --------->ANAC58<---------ICU4          --------->ANAC46<--------HAHB4       <-------TEIL      <---------ATHB51                                               --------->TOE1(2)   <-------TEIL          --------->ICU4                                        --------->ATHB12 ------TEIL  ----------->RAV1(1)------------>CBF --------->GLK1(2)             <---------ICU4 ------>CCA1(2)          <---------ATHB12   ---------->DOF2                   --------->ICU4 ----->ARR14(2)        --------->WOX13(1)<---------TOE2(3)                    <---------YAB1        - ------ARR14(2)      ------------>CBF--------->YAB1       <----------DOF2    *TSS       --------->TOE2(2)   atacatacatacacaccacaaaaaccaattattttccaattttaagaaaagtttctgtgtctttttttttttttttggtgataattgaaacatatgaaac  8736100                --------->ZAT2                                                                      -                <---------ZAT2                                                                    >>>                <---------At4g35610                                                           -------                --------->At4g35610                                                          <-------             --------->At4g35610                            <------ZmHOX2a(1)               ---------          ---------->DOF2       <----------DOF2            --------->ANAC58                 <--------    <-----------TGA1     <-----------GT1  <----------DOF2  --------->ANAC46         <xxxxxxxxxxxxxxxxsmallRNA(i)    <-----------HVH21   <-------TEIL   <---------ARR11(3)  --------->ANAC58  <----------ID1--------->DAG2 -------->YAB1 ----------->RAV1(1)  <----------DOF2        ----------->GT1---------->DOF2---------->DOF2   aatcgtcgtcatagaagcagcagagattcaccttctttctttatctttccctctcagaaacaggaaacaaaattcaaaaagaacaaaaaaaaaaaggtca  8736200                                                                          --------->AtMYB61                                                                         <---------MYB55(2)                                                                         --------->MYB46(3)                                                                        ------>MYB83                                                                        ------>MYB46(1)                                                                       --------->MYB55(1)                                                                      <---------MYB111(2)                                                                      <---------MYB111(1)      <-----                                                                      <---------MYB46(2)     ------>NtERF2                                                                 ----------->RAV1(1)        ---------                                                                --------->AtMYB61           <--------                                                              ------>MYB83------->GAMYB   <---------ATERF1(1)                                                              ------>MYB46(1)            --------->RAP2.6(2)                                                             --------->ORA47(1)          --------->DEAR3(1)                                                            --------->MYB46(3)           ------->GAMYB                                                            <---------MYB55(2)          <---------MYB55(2)                                                            <---------MYB46(2)          --------->DEAR3(2)                                                            --------->DREB2C(2)     --------->LBD16                                                            --------->DEAR3(1)     --------->ANAC58                                                    --------->ATHB12  --------->MYB46(3)<------------AtMYB77                                                    <--------HAHB4------>MYB83  --------->AtMYB61                                                    <---------ICU4-------->P    --------->DEAR3(1)                         --------->YAB1             --------->YAB1------>MYB46(1)  --------->ANAC46 -------->AtMYB61        <---------ICU4            <---------ATHB12   --------->AtMYB61<---------ATERF1(1) >>>>>>>MYB80           <---------ATHB12         --------->WOX13(1)   --------->DEAR3(1)--------->MYB46(3) -->WRKY18(1)      --------->YAB1       --------->AtMYB61   --------->DEAR4(1)  <---------ALFIN1----- ----HVH21 <---------ANAC58           <---------ARR11(3)   --------->DEAR3(2)<---------ALFIN1<------- -->GT1    <---------ANAC58           --------->ARR11(3) <-----------GT1-------->P --------->ANAC58-- --ID1     <---------ANAC46--------->At4g35610------>ZmHOX2a(1)--------->MYB46(3) <---------LBD16 <--   aaccaaaacgatggcgtttcatcacaatcatctctcacaagacctctccttcaatcatttcaccgaccaacaccaacctccacctccgcaaccgcctcct  8736300       ----------->RAV1(1)               ------>ZmHOX2a(1)     --------->LBD16                  ------>NtERF2    --------->ANAC58                 --------->DEAR3(1)    --------->ANAC58               ------>NtERF2    --------->ANAC46               --------->ABI4(1)   <---------LBD16                --------->DEAR3(1)  ------>ZmHOX2a(1)               <---------ALFIN1 <---------ALFIN1                 --------->DREB2C(2) ----ALFIN1                      --------->ORA47(2)                                                -- >DEAR3(1)                     <---------ALFIN1                                                    -- -ALFIN1  ------->GAMYB       <---------ABI4(2)                                        <---------ARR11(3) ->ZmHOX2a(1)              ---------->DOF2    ----------->GT1              --------->At4g35610  <---- --ATERF1(1) ----------->RAV1(1) --------->DEAR4(2)          <----------DOF2        --------->YAB1--- ---->ZmHOX2a(1)          --------->ANAC46  <---------WOX13(1)             <---------At4g35610------>ZmHOX2a(1) -------ALFIN1  ----------->RAV1(1)<---------ATERF1(1) --------->ANAC46 ------>ZmHOX2a(1)    --------   cctcctccgcaacagcaacaacatttccaagaagcaccgcctcctaattggttaaacacagcgcttcttcgttcctcagataacaacaataacttcctca  8736400                                                                      <---------DEAR3(1)                                                                      --------->RAP2.3(2)                                                                     --------->RAP2.3(1)                                                                     <------NtERF2                                                                     --------->ATERF1(1)                                                                    --------->ABI4(1)                                                                    ------>NtERF2                                                                    <---------RAP2.3(1)                                                                    <---------ATERF1(1)                                                                   <---------DEAR3(1)                                                                   <---------ATERF1(2)                                                                   --------->DEAR3(1)                                                                   --------->RAP2.6(2)                                                                   --------->RAP2.3(2)                                                                   --------->RRTF1(3)                                                                   --------->RRTF1(2)                                                                   --------->RAP2.3(3)                                                                   --------->ATERF1(2)                                                                   <---------ALFIN1                                                                   --------->ANAC46                                                                  --------->ERF1                                                                  --------->ORA47(2)                                                                  --------->RAP2.3(1)                                                                  --------->DEAR4(2)                                                                  --------->RRTF1(1)                                                                  --------->RAP2.6(1)                                                                  --------->ATERF1(1)                                                                 ------>NtERF2                                                                 <---------ATERF1(1)                                                                 <---------RAP2.3(1)                                                                 --------->ABI4(1)                                                                 <---------DREB2C(1)                                                                 <---------DEAR4(2)                                                                 --------->At4g35610                                                                 <---------At4g35610                                                                --------->RAP2.3(3)                                                                --------->RAP2.3(2)                                                                --------->RRTF1(2)                                                                --------->RAP2.6(2)                                                                --------->RRTF1(3)                                                                --------->ATERF1(2)                                                                --------->DEAR3(1)                                                                --------->ANAC46                                                                <---------DEAR3(1)                                                                <---------ATERF1(2)                                                                <---------ALFIN1                                                               --------->RAP2.6(1)                                                               --------->ATERF1(1)                                                               --------->RRTF1(1)                                                               <------NtERF2                                                               --------->RAP2.3(1)                                                               --------->DEAR4(2)                                                               --------->ORA47(2)                                                               --------->ERF1                                                              <---------ATERF1(1)                                                              --------->ABI4(1)                                                              ------>NtERF2                                                              --------->At4g35610                                                              <---------DREB2C(1)                                                              <---------DEAR4(2)                                                              <---------At4g35610                                                              <---------RAP2.3(1)                                                             <---------DEAR3(1)                                                             <---------ATERF1(2)                                                             --------->RRTF1(2)                                                             <---------ALFIN1                                                             --------->ANAC46                                                             --------->DEAR3(1)                                                             --------->RRTF1(3)                                                             --------->RAP2.6(2)                                                             --------->RAP2.3(3)                                                             --------->ATERF1(2)                                                             --------->RAP2.3(2)                                                            --------->ATERF1(1)                                                            --------->RAP2.6(1)                                                            <------NtERF2                                                            --------->ORA47(2)                                                            --------->RRTF1(1)                                                           <---------At4g35610                                                           --------->At4g35610                                                           --------->ABI4(1)                                                           ------>NtERF2                                                           <---------RAP2.3(1)                                                           <---------DEAR4(2)                                                           <---------ATERF1(1)                                                          --------->ANAC46                                                          <---------ALFIN1                                                          --------->RAP2.3(2)                                                          --------->RRTF1(3)                                                          --------->RRTF1(2)                                                          <---------DEAR3(1)                                                          --------->RAP2.3(3)                                                          --------->RAP2.6(2)                                                          <---------ATERF1(2)                                                          --------->DEAR3(1)                                                          --------->ATERF1(2)                                                         --------->ERF1                                                         --------->RAP2.3(1)                                                         --------->DEAR4(2)                                                         --------->ATERF1(1)                                                         --------->RRTF1(1)                                     <---------ARR14(2)  --------->ORA47(2)                                     --------->ARR14(2)  --------->RAP2.6(1)              --------->At4g35610   --------->At4g35610 --------->LBD16<---------At4g35610              <---------At4g35610   <---------ZAT2      ------>NtERF2--------->DEAR4(2)           ------>NtERF2            --------->ZAT2      <---------ATERF1(1)          <---------ALFIN1      --------->ANAC46        --------->At4g35610         <---------MYB55(2)     --------->ANAC58        <---------At4g35610         --------->MYB46(3) --------->ANAC58            --------->ABI4(1)    --------->ANAC46        ------->GAMYB              --------->DEAR3(1) --------->At4g35610    <---------ALFIN1        --------->ANAC46           <---------ALFIN1--------->At4g35610   <---------REM1(2)       --------->MYB46(3)        ------>ZmHOX2a(1)--------->DEAR3(1)  <---------ALFIN1      --------->MYB46(3)<---------GLK1(2)<---------DREB2C(1) ----->GAMYB<------NtERF2<---------ALFIN1 <---------ARR14(2)--------->RAP2.3(1) ------->AtMYB61      --------->AtMYB61   --------->ARR14(2)--------->ERF1<---------At4g35610 -----ALFIN1--------->MYB46(3)  --------->ANAC58 ------>ZmHOX2a(1)<------NtERF2--------->MYB46(3) ------>MYB46(3)   --------->ZAT6   <---------At4g35610--------->ANAC46------>NtERF2              --- ->TOE2(3)--------->DEAR3(1)--------->ANAC58 <-----------GT1--------->DEAR4(2)-------->P         <---   acctccacacagccaccgctaacaccacaaccgcaagcagctccgattctccttcctccgccgccgccgccgccgctgctaaccagtggctatctcgctc  8736500                                                                         --------->At4g35610                                                                         <---------At4g35610                                                                   --------->LBD16                                                                 --------->At4g35610                                                                 <---------At4g35610                                                                 <---------LBD16              ------->GAMYB                                   ----------->HVH21             --------->ANAC58                                <-----------HVH21             --------->ANAC46                               --------->TGA2(1)        ------>ZmHOX2a(1)                                   <---------TGA2(1)   <----------DOF2                                          --------->bZIP60(1)                 ----- ------>ZmHOX2a(1)                                    ========================HOX2a_HOX2a       ----- --->ZmHOX2a(1)            --------->MYB46(3)         ------>ZmHOX2a(2)<------ZmHOX2a(1) <---------LBD16 ------ALFIN1--------->ANAC58               <------NtERF2   <---------bZIP60(1)    <---------YAB1   ctcctctttcctccaacgaaacaacaacaacaacgcttccatagtcggagatgggatcgatgatgtcaccggaggagcagacactatgattcagggagag  8736600  Previous    Next  AGI:  At5g25220.1    Description:  KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription factor. Identical to Homeobox protein knotted-1-like 3 (KNAT3) [Arabidopsis Thaliana] (GB:P48000;GB:Q8L839;GB:Q8LDC1); similar to KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4), transcription factor [Arabidopsis thaliana] (TAIR:AT5G11060.1); similar to class II knotted-like homeobox protein [Prunus persica] (GB:ABH03531.1); contains InterPro domain KNOX1; (InterPro:IPR005540); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain KNOX2; (InterPro Range:  from: 8736077    to: 8738587    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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