Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          ------>ZmHOX2a(2)                                                                       <---------GLK1(1)                                                                       --------->GLK1(1)                                                                       <------ZmHOX2a(2)                                                                      <---------ARR11(3)                                                  --------->At4g35610 <---------ARR14(2)                                               <---------At4g35610    --------->AGP1                                     <----------DOF2                  <---------AGP1                                    <---------ANAC58                  --------->ARR11(3)                                    <---------ANAC46                  --------->ARR14(2)    ---------                                    <---------ANAC58            ===============HOX2a_HOX2a  ---------                                 <---------MYB52(1)             <------ZmHOX2a(1)           <--------             --------->HSFC1(2) <-------GAMYB  --------->At4g35610    <-----------ARR10--------->ZAT14             <---------HSFC1(2) <---------At4g35610            xxxxxxxxxxxxxxxxxx>smallRNA(si3)            ------->TEIL     ------->GAMYB    --------->DEAR3(1)==============HOX2a_HOX2a   <-------- -------->HVH21             --------->ANAC46  --------->RAP2.3(2)    <---------CCA1(2)<----------DOF2   atgacaacaatatgaagcttctcaccttcaacgcagttgcttttagagccgctgatgaagaagtaaggaccagatctctctagcttcactttagtatctc  8647400                           --------->ALFIN1                           <---------REM1(1)                      --------->MYB52(2)                     <---------AtMYB61              <---------At4g35610              --------->At4g35610                    <-----------HVH21                 --------->SPL7              --------->ZAT2                         <-----------TGA1               --------->TOE1(1)              <---------ZAT2                        <---------ANAC58            ------>ZmHOX2a(1) --- >ARR14(2) <---------At4g35610                      <---------ANAC58      <----------DOF2     <------ >ARR11(3) --------->At4g35610            ------->TEIL                    ------>ZmHOX2a(1) <-------- -ARR11(3) <---------ZAT2  <-----------RAV1(1)------->TEIL      <---------ARR14(2)  --------->TOE2(1) -ARR14(2)--------->MYB52(2)          <---------TOE2(3)         --------->ARR14(2) --------------->AtSPL8   cattgctgtagttagctgctgggtttgtggtgttgcagttaatgtatgcatctttcgtcacttgcaaaaccgagtccttttcctcatcgtacttccacac  8647500                                                                                                 ----                                                                                              <------                                                                                              -------                                                                                           --------->ANAC58                                                                                           --------->ANAC58                                                                                      --------->DEAR3(1)                                                                                     <------NtERF2---                                                                      ----------->HVH21------>NtERF2-      <-------TEIL                 --------->ALFIN1          ---------->DOF2        ------>NtERF2---- ------>ZAT14                   --------->DAG2           <---------ANAC46          <---------ETT(2) - ---ALFIN1                     ---------->DOF2         --------->ALFIN1         --------->ALFIN1 ---- -ALFIN1                 ---------->DOF2 <----------DOF2<---------LBD16--------->MYB52(1)  --------->ANAC46   tgttcacatacagaagtttagaaatttcaaaggaaaagtgctgatttttggaatgaattgggggaaagaaaactgaccgagagtgtcgccaacgcgaaac  8647600                                                        <---------At4g35610                                                        <---------ZAT2                                                        --------->At4g35610                                                        --------->ZAT2                                                      <------ZmHOX2a(1)                                                    --------->LBD16                                                   ================================RAV                                                   <---------HSFB2a(2)                                                   <---------LBD16                                                   --------->HSFB2a(2)                                                   <-----------RAV1(2)                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                                              <---------HSFC1(2)                                              --------->HSFB2a(1)            --------->YAB1         <---------At4g35610                  <---------HSFB2a(1)      ----------->RAV1(1) ------->GT1                                  ===============HOX2a_HOX2a     <---------ICU4 ---ARR14(2)                                 --------->ARR11(3)        ------>NtERF2 -->ARR14(2)                                 --------->ARR14(3)       <---------ETT(1) ------>At5g28300                            <---------ARR14(2)       ----------->HVH21 -------->ARR14(2)                           <---------ARR11(3)     ------>NtERF2 ----->TOE2(3)                               --------->ARR14(2)   <---------ANAC58 -------->ZAT14                 --------->DAG2--------->HSFC1(2)  <---------ANAC58 <----------DOF2 ----->TOE1(3)              <-----------RAV1(2)==============HOX2a_HOX2a  --------->YAB1   cgtaaactctcagcccatttgtttagggactcagaaggcgaagaagggatcttccaggagctggttttgcctccgacaataatctctttgctacagacga  8647700                                                                                         ---------->DOF2                                                                                     <---------ZAT6                                  ----------->RAV1(1)                         =======================                    ----------->GT1        <---------ZAT14                    <---------------AGL15<-    <---------WRKY38(1)     <-----------RAV1(1)                             --------->At4g35610    --   gattagtcaacaagaagaagattagaaaaaatgttgcaacaagagttctctgagccattagaatgaagtttgtgtatgagctatatagagataaagagaa  8647800           --------------->AGL15           <---------------AGL15   <---------WOX13(1)          <---------ANAC46        <------------CBF          <---------ANAC58       --------->ATHB12          <---------ANAC58     <---------WOX13(1)     <-----------RAV1(1)      <------------CBF    <---------TOE2(3)        --------->ATHB12  <---------AHL20(2)   <----------DOF2 ==========================MADS_MADS        --------->AHL20(2)                                 <----- --------ARR11(3)    <----------DOF2        <-----------TBP             <---------MYB52(1)     ------ ------->ARR11(3)   *TSS    <---------YAB1<----------DOF2             <---------MYB46(3)       <-----   agattttatgttgcttatttgggctcttttgtgattgattgggtctttatataggggaagaagagaaactagccgttggaagtgaatgttgttttgcagc  8647900        <------MYB83                                                              ----------->GT1        <------MYB46(1)                                              <---------ARR11(3)       <---------AtMYB61         <-------MYC3                        --------->AHL20(2)      <---------MYB52(1)      <-----------GT1                      --------->ANAC46     <-------GAMYB   <-------GAMYB                         <---------TOE2(2)--------->ARR11(3)    <-----------RAV1(1)  <---------YAB1                    <---------TOE1(2)<---------ARR11(3) ----ZAT2           <---------MYB46(3)      ------>ZmHOX2a(1)      --------->ANAC58 --->At4g35610   <---------MYB46(3)<-----------HVH21      <-----------RAV1(2)--------->CCA1(2)  ----- ----At4g35610--------->MYB52(1) ------->MYC3  <---------YAB1      --------->ANAC58--------->At5g28300   tactctctgttggtcccaacggttgttattttaaacgtgtcaagtccttaccattgagactcaggttccaagaaattagatatacagtaatttcattttc  8648000                                --------->LBD16                                <------NtERF2                               --------->ANAC58                               --------->ANAC46                     --------->ATHB12                     <---------AHL20(2)                    <---------AHL20(1)     <---------MYB52(2)                    --------->AHL20(2)--------->ANAC58        <---------WRKY12       --------->ANAC58      <-----------HVH21       <---------LBD16--------->MYB52(1)                 --------->ANAC58     ------->GAMYB  <---------AHL20(2)--------->ANAC58                          --------->ANAC58  --------->MYB52(1)--------->AHL20(1)--------->ANAC46                       <---------ATHB12  ------ ---->TOE2(3)    <---------GLK1(2)---------->DOF2                      <---------TOE2(3)  ---------->DOF2   ttaataacggtcagagacagaatttattgatgtccgcaaaacgcaattaacgggaagagagtgcttagaatttgatgtaatcaagaaaatgctaaagtaa  8648100                                                         <---------TOE1(3)                     --------->AHL20(2)                  <---------TOE2(3)                     <---------AHL20(2)      <---------ICU4                 --------->AHL20(2)          --------->ATHB51             ----------->HVH21               <---------AHL20(2)           <---------YAB1 <------ZmHOX2a(1)               --------->AHL20(2)         <---------ANAC55(2)  <---------ARR11(3)         ----------->GT1                  --------->ANAC55(2)  --------->ARR11(3) ----------->GT1 --- ---->DOF2    --------->YAB1     ---------->DOF2    --------->WOX13(1)---------->DOF2         -------   agtttacaagagagtataaaaatataaatagaaatgaaagaatcacataattgtcaattaaggaagataatccaaagtgacatttgggaaaatcaaacag  8648200                                                 <---------ANAC58                  --------->DAG2                 <---------ANAC58      --------------->AGL15                      <---------ANAC55(1)      <---------------AGL15              <----------DOF2     ----------------->AGL3         <----------DOF2       --------->AtMYB61     ================================================================================================ ------>ARR14(2)---------->DOF2    <---------DAG2<---------ANAC46                     --------------- -->YAB1   ---------->DOF2      <-----------GT1 --------->MYB52(2)                    <--------------   aatacactctaaaaaaagaaaaggtttacatataaaaccttttcttttgttacttgtaaaccaaaaccagagcgaaacaagaagagacccctattgagca  8648300  Previous    Next  AGI:  At5g25090.1    Description:  plastocyanin-like domain-containing protein. Identical to Early nodulin-like protein 3 precursor [Arabidopsis Thaliana] (GB:Q8LC95); similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25060.1); similar to phytocyanin-like arabinogalactan-protein [Gossypium hirsutum] (GB:ABI96983.1); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) Range:  from: 8647021    to: 8647820    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g25100.1    Description:  endomembrane protein 70, putative. similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G10840.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT2G24170.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT3G13772.1); similar to unknown [Populus trichocarpa] (GB:ABK94754.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44349.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66672.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) Range:  from: 8648106    to: 8651140    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version