Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->TOE1(1)        --------->HSFB2a(2)      <---------ZAT2      --------->ZAT2    <---------ALFIN1                                   --------->ANAC58                     <--------  --------->SPL7          <---------MYB46(3)           --------->ANAC58                ============== --------GT1              --------->MYB111(1)          --------->ANAC46                ------>ZmHOX2a(1) -------GT1    ---------->DOF2                        --------->LBD16          <---------MYB52(1)   atcgtcccacctcgaacaaaagtcttagtagttgcattatccccttgaaacgattccacgaattcttgatacaaacgagccgtttcatcctctgctttct  8639800                                      --------->WOX13(1)                                    <---------ATHB12                                --------->YAB1      <---------ARR11(3)       <---------ATHB12      --------->ARR11(3)     --------->WOX13(1)    <---------YAB1         <---------ATHB12                               <------ZmHOX2a(1) --DOF2<------ZmHOX2a(2)--------->AHL20(2)                              --------->LBD16  --------->ATHB12 =============HOX2a_HOX2a--------->WOX13(1)  --------->At4g35610       <---------LBD16------->TEIL   gcgattaagatcgaaaaccccatcgattaatcaatcaaatcaatctccgatgaacaaatttctcaaattctacccaggaatagcgatgaatcgattgaaa  8639900                    <---------GLK1(2)                 ------>ZmHOX2a(1)              <---------AtMYB61         <---------KAN4(2)     ------->GAMYB<---------TOE1(2)        --------->HSFB2a(2)        --------->HSFB2a(2)          <-    <---------MYB52(2)                     --------->HSFC1(1)        ------>ZmHOX2a(2)            <--   <---------At4g35610      <<<<<<<<<TBF1  <---------HSFB2a(2)   ----------->HVH21         --------->At4g35610   --------->At4g35610   <<<<<<<<<TBF1    <---------LBD16    <---------YAB1   ------->TEIL <---------At4g35610   atttcaactcaccttcttcctagcttcttcttcttctctgtgtttctggaatggtgttttcttacgagtgatcgagaatgaactcattgtttcagcatcc  8640000                          ------->GAMYB                         --------->ANAC46                         --------->ANAC58                         --------->ANAC58                       --------->MYB52(1)                       ------>MYB83                     <---------MYB59                                       <-------TEIL                     --------->MYB46(3)                                   --------->CCA1(2)                    --------->ANAC58                        <------ZmHOX2a(2)                    --------->ANAC46                       --------->ARR11(3)        <---------HSFB2a(2)                     --------->ATHB12          --------->ARR14(1)        --------->HSFB2a(2) --------->MYB52(1) <---------YAB1            <---------ARR14(2)       <---------LBD16--------->MYB55(1)       --------->ICU4 ---------->DOF2           <---------ARR14(2)      ------>ZmHOX2a(1)------>MYB46(1)        <---------TOE2(3)          --------->ARR14(2)     <----      <---------LBD16<---------MYB55(2) <---------RAP2.6(3)<---------ARR11(3)           <---------GLK1(2) -----------AtMYB77 --------->ANAC58--------->GLK1(2)  ---------->DOF2   --------->ARR11(1) <-------- -------At4g35610  ------->TEIL   ---------->DOF2 <---------WOX13(1)   ----------->ARR10--------->ARR14(2)   aactgctcctcgggaaacttgtacccaacgaaacagagaagccgaattgatgattgagaaagatcaaagtagaaagatacgaagactatggattctgatt  8640100                                  <---------WOX13(1)                                             <---                                --------->ATHB12                                                 ----                            ----------->TGA1     <---------ZAT2                                 -----                         --------->DAG2          <---------STY1(2)                            -------                    <---------HSFB2a(2)          --------->STY1(2)                           <-------     <---------TOE2(3) ---------->DOF2    <------ZmHOX2a(1)<---------HSFB2a(2)               -------- -----LBD16      ------->TEIL  <---------YAB1    --------->ZAT2                      --------->MYB52(1) -YAB1      <---------AtLEC2----------->HVH21  --------->ZAT18<------ZmHOX2a(1)--------->At4g35610   cggaactagggtttggatgaatcgagaaaggtgacgattgatcaggaagcgagctagggctcgaggagagaacacaagacgagctaaaaacgggagatag  8640200                    <---------AHL20(2)                    --------->AHL20(1)                                          --------->ANAC58          --------->ICU4                                                    <---------ANAC58        --------->YAB1                                                      --------->ANAC55(2)        <--------ATHB1                                                      <---------ANAC55(2)        -------->HAHB4                                                      <---------ANAC46        --------->ATHB51                                                    <---------ANAC58        <--------HAHB4                                                  <------------CBF        <---------ICU4                                                 -------->HAHB4        --------->ATHB12                                               <---------ICU4       --------->ICU4                                                  -------->ATHB1       --------->AHL20(2)                                              --------->ATHB51       <---------YAB1                                                  --------->ATHB12       <---------ATHB51                                               --------->ICU4     --------->YAB1 *TSS                                              <---------ATHB51   --------->AHL20(2)                                              --------->AHL20(1)               -   --------->AHL20(1)                                              --------->AHL20(2)               <  --------->YAB1    <---------AHL20(1)                             <---------AHL20(2)               - -------ID1      --------->AHL20(2)                               --------->AHL20(2)                < ------->GT1  <------ZmHOX2a(1)                                --------->AHL20(2)           <-------- ------>GT1  <---------YAB1                          <---------LBD16  <---------YAB1  <---------AHL20(2) -->CCA1(2)  ----------->GT1                     --------->GLK1(2)<---------AHL20(2) --------->AHL20(2) --ARR14(2) <---------TOE2(3)                 <---------TOE2(3)<---------AHL20(2) --------->YAB1   <- ->ARR14(2)--------->YAB1                <----------DOF2      --------->AHL20(2)--------->ANAC58   --   ggaaaaataataattaggataaaatatttgtattttcagtcgtcttttaagaatttgtggaattttaaattaattattgcgtaagcataaaattttgata  8640300               <---------ANAC55(2)              <-------TEIL          ----------->GT1         --------->DAG2     --------->AHL20(2)     <---------AHL20(2)    --------->AHL20(2)                                                                            --- -------->AHL20(1)                                                                 --------->AHL20(2) ---------AHL20(2)                                                --------->YAB1   <---------AHL20(2) -------->AHL20(2)              --------->YAB1                --------->ICU4       --------->ARR11(3) ---------AHL20(1)             <---------YAB1                 --------->AHL20(2)   <---------AHL20(1) -YAB1  ---------->DOF2      --------->YAB1       --------->TOE2(3)         ---------->DOF2     ----- --------AHL20(2)           ----------->GT1  <---------AHL20(2)  <---------YAB1    <---------ARR11(3) ------->AHL20(2)           <---------YAB1   --------->AHL20(2)<---------AHL20(2)  --------->AHL20(1)   aataaatttaaaaagttacatatacaaaaaatgataataaacaaaatttaaatctaaattgatatttattataaactggaaagaatatattgtttcaaaa  8640400                                                                   <---------ANAC46                                                                <---------MYB52(1)                                                               <-------GAMYB  <---------YAB1                       <---------ZAT6                 <---------AHL20(2)    --------->YAB1         --------->AHL20(2)                          <---------AHL20(2) <---------AHL20(2) ------>AHL20(2)   <---------YAB1           <----------ID1    <-----------RAV1(1) ---->YAB1 --------->YAB1        <---------AHL20(2)  --------->AHL20(2) --------->AHL20(2)          <   ataaaaacttttaaaataactatgagtgttaacatatatttgtaatagaacaaaattttttttgctgttgtttataaattataactagaagaattgaaat  8640500                    <---------TOE2(3)                    <---------TOE1(3)                   --------->MYB52(1)                                --------->ANAC55(2)                   <---------DOF5.7(2)                               <---------ANAC55(2)           ---------->DOF2                                          <-------TEIL      <---------TOE1(3)       <---------AHL20(2)       <---------AHL20(2)      <---------TOE2(3)      --------->AHL20(2)        --------->AHL20(2)                    -------- ---------TOE2(3)--------->DOF5.7(2)            ----------->GT1--------->AHL20(2) --------->ATHB12   ttgagattgaggttaaagagttaacgttctatttaatagagagatttagagagtgatataaataagaaaatacatatttagaagtgatttggagtaagta  8640600                          <---------AHL20(2)                          <---------YAB1                        <-------GAMYB                       <---------AHL20(1)                  <---------ZAT6                       --------->AHL20(1)           <---------AHL20(2)                    --------->AHL20(2)            <---------CCA1(2) <---------YAB1           --------               ------->TEIL                <---------AHL20(1)  <------MYB46(1)          --------->At4g35610               <---------ARR11(1)          --------->ARR11(3)  <------MYB83  <---------TOE2(3)               <---------ARR11(3)          <---------ARR11(3)  <---------MYB46(3)       <---------At4g35610   <-----------GT1<----------DOF2          --------->AHL20(1)<--------P      <---------YAB1  <------- --->GT1      <---------CCA1(2)     ---------->DOF2<---------AHL20(1)--------->TOE2(3)<-----------RAV1(2)   aaattttacataaactgtatctttatatattattcccacaaagaatattttcatatatttagagttggttatcttagttaagaatggttcagatgatgat  8640700  Previous    Next  AGI:  At5g25060.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G10800.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79213.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44360.1); similar to putative U2-associated SR140 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28014.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain DNA-binding SAP; (InterPro:IPR003034); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); conta Range:  from: 8634077    to: 8640220    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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