Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------ARR11(3)                               --------->ARR11(3)                               <---------ARR14(2)                               --------->ARR11(1)      <---------ANAC46  <---------ZAT2 --------->ARR14(2)      ----------->GT1   --------->ZAT2 <---------ARR14(2)        <-------GAMYB                      -    <---------ZAT14     <---------At4g35610                     <------MYB46(1)                     <    --------->ZAT14     --------->At4g35610                     ----------->GT1                     - -----LBD16      <---------DDF1--------->ARR14(2)               <------MYB83               --------->GLK1(2) >ARR14(2)      <---------ETT(2)   <---------LBD16   --------->GLK1(2)                    <---------GLK1(2) -ARR14(2)      --------->ETT(2)--------->CCA1(2)   <---------GLK1(2)       --------->ARR11(3)     --   gggaagtgaagtgaatagtcgacatgagctggagatatggggattgggaagtgagaatcgctaagtgggttactatgagctcttgctctgtagaatctct  8534600                                     <---------ANAC58                                     <---------ANAC58                                  <----------DOF2                --------->ANAC46                                 <---------ANAC58                --------->ANAC58                                 <---------ANAC58                --------->ANAC58              --------->ATHB12<--------P                       --------->AtMYB61--------->MYB52(1)---   <------ZmHOX2a(1)         <-------GAMYB                     ----------->RAV1(1)          <-------- <---------TOE1(2)          --------->MYB55(2)         <-----------GT1          --------->YAB1------- -------->HSFB2a(2)         --------->MYB111(2)        --------->ZAT6        --------->YAB1 <-------- ---------HSFB2a(2)         <---------MYB46(3)      --------->YAB1     ----------->GT1      --------- ----->ZmHOX2a(1)          --------->ALFIN1         <---------ICU4    <---------TOE2(3)    <--------- ------->TOE1(2)   --------->At4g35610 ---------->ID1 <---------YAB1---------->DOF2      ----------->HVH21   tcctaggaagccctgttgatttgctgaaggtggttgctttcgtctcattgtccattatcactaaaccacacaaaggtaacaataacagtgagtgacataa  8534700                                       <---------At4g35610                                       --------->At4g35610                                    <-------TEIL                                <---------AHL20(2)                             <---------ARR14(2)                             --------->ARR14(2)      --------->GLK1(2)                             ------->TEIL      ------>ZmHOX2a(2)      <---------GLK1(2)   <---------ANAC55(2) --------->CCA1(2) ------>YAB1              --------->ANAC55(1) <------ZmHOX2a(2) -TGA2(1)                 --------->ANAC55(2)--------->ARR11(3)                     <----------DOF2 -->ICU4                  <---------ANAC55(1)--------->AGP1                    <---------MYB52(2) -bZIP60(1)            <---------ARR14(2)    <---------ARR11(3)              --------->MYB52(1) >bZIP60(1)            --------->ARR14(2)   --------->GLK1(1)           ---------->DOF2 --------------TaNAC69(2)<-------TEIL  ----------->RAV1(2)        <----------DOF2 ------->TEIL   tcaaaacagagtcttacgaataacaaatacgtatttgattcatctgagatctaataatctagcttaaactttgtgaaagaaacgaactttgaataaacta  8534800                                       --------->TOE2(3)                                       --------->TOE1(3)                                 --------->At5g28300                         ----------------->AGL1       <---------HSFB2a(2)      --------->TOE2(3)            --------->ZAT14       --------->HSFB2a(2)      --------->TOE1(3)            <---------ZAT14     <---------------AtSPL3 <---------ALFIN1        ----------------->AG     ---------->DOF2        --------->CCA1(2)   --------   agaccacttctgcaaaacccagtaaatgcctaaaccgtaaaccctaattctctaaagtctctgttcactgagaagatagagagcaagtatggctatgaga  8534900                                                                               <---------MYB59                                                                              ----------->RAV1(2)                                                                              --------->ANAC55(2)                                                                            <-----------GT1                                                                            <<<<<<<<<GT-1                                                                         --------->ARR14(2)                                                                         <---------ARR14(2)                                                                        <------ZmHOX2a(1)                                                                   --------->HSFB2a(2)   ---------->DOF2                          --------->ANAC58       <---------HSFB2a(2)   --------->MYB52(1)     <---------YAB1    --------->ANAC46   --------->GLK1(1) ->YAB1         --------->YAB1              --------->ANAC58  --------->ARR11(3)            <--------   aaaactaaaggcatgaattcatagttatatgatacaatacgaacacaagaaatagactaagtgagatttcgagaggatttacctgattcaatctccactt  8535000                    ---------->ID1            *TSS       --------->YAB1                  ------->GAMYB                                       <---------TOE2(2)       <---------ICU4                -------->P                --------->ARR11(3)          <---------TOE1(2)      <---------ATHB12            <---------MYB52(2)           <---------ARR11(3)         ------>ZmHOX2a(1) -ALFIN1       <---------ZAT2--------->HSFB2a(2)    --------->At4g35610            <---------TOE2(3)   gaaaatcaataatctcgagctcgtcgttcttcgaaaactaaccctcagagaagaagcagagagaagaacttgcctaagaagaattagggttcctatgttc  8535100                                                                     <----------DOF2                                                                     <---------DAG2                         <---------YAB1                           ===================================                        --------->TOE2(3)                         --------------->AGL15               <---------CCA1(2)                                -------->P <---------AtLEC2    ------->TEIL      <---------YAB1 <----------DOF2         <---------MYB52(2)                <-----   taaatggacccaaacccataacttattcttaatgggcttctttccagcccattacattcactgactaacctctttttgcaagaccaagaacccaagtctt  8535200                  ----------->GT1           --------------->AGL15           <---------------AGL15          <-----------------AG          ----------------->AGL2         -------->P     <-----------GT1                               --------->MYB52(2)  --------->MYB52(2)      <-----------GT1        <--------P                            --------->AHL20(2) ==========================MADS_MADS    ------->TEIL              --------->HSFB2a(2)  <---------AHL20(2) -----DOF2<-----------------AGL1  --------->MYB52(1)              <---------HSFB2a(2)------->TEIL   ttgttatttgctaccccaaatggtatttttacaaactgactgaatctattggtaagttgcataatgttttagaaattttggagtatgaattttttaagtc  8535300                                 <---------ZAT18                                 <---------ZAT14                                 --------->ZAT14                                 --------->ZAT18                            <---------ANAC58                            <---------ANAC58                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)                         <---------ARR14(2)                                  <---------ANAC46                         <---------ARR11(3)                                  <---------ANAC58                         --------->ARR11(3)                           <-------TEIL                         --------->ARR14(2)                          --------->CCA1(2)                        <---------GLK1(1)                     --------->YAB1 <---------ANAC58                        --------->GLK1(1)                   --------->AHL20(2)    ---------->DOF2                  --------->GLK1(2)     --------->YAB1     --------->YAB1   <-------TEIL   aatgtaatttagaccgagagaatcagagatccttgtgcacaagaatgaagaatcacagaaataaaaataagatacaagttcgtgtaaagaatagtttctc  8535400                                                      <---------ALFIN1                                                     --------->LBD16                                                 ------>NtERF2                  <<<<<<<ZML2                    <---------ATERF1(1)               <---------HSFB2a(2)              <---------ALFIN1       >>>>>>>>>>>>>>>>>LFY               --------->HSFB2a(2)              --------->DEAR3(1)    --------->ANAC58               --------->HSFC1(1)            --------->ANAC58--------->WRKY12               <---------HSFC1(1)       ----------->RAV1(2)  --------->WRKY45           <---------ANAC46    --------->At5g28300<---------ALFIN1    --------->ANAC58    >>>>>>>>>>>>>>>>>LFY       <-----------HVH21--------->RAP2.6(2)   --------->ANAC46   <------ZmHOX2a(1)       <---------ALFIN1  --------->ANAC58--------->WRKY38(1)   tctaaggaccattgtgtctagaacgtctcccactgtgactccctctgaagccacccccagactttgaccctccagccattggaccattaccatgcttcaa  8535500  Previous    Next  AGI:  At5g24840.1    Description:  methyltransferase. Identical to Probable tRNA [Arabidopsis Thaliana] (GB:Q8GXB7); similar to methyltransferase [Arabidopsis thaliana] (TAIR:AT5G17660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43956.1); contains InterPro domain Conserved hypothetical protein CHP00091; (InterPro:IPR004395); contains InterPro domain Putative methyltransferase (InterPro:IPR003358) Range:  from: 8533790    to: 8535046    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g24850.1    Description:  CRY3 (CRYPTOCHROME 3); DNA binding / DNA photolyase/ FMN binding. Identical to Cryptochrome DASH, chloroplast/mitochondrial precursor (CRYD) [Arabidopsis Thaliana] (GB:Q84KJ5;GB:Q8VZD8); similar to PHR2 (PHOTOLYASE/BLUE-LIGHT RECEPTOR 2) [Arabidopsis thaliana] (TAIR:AT2G47590.1); similar to Cryptochrome DASH, chloroplast/mitochondrial precursor (Cryptochrome-3) (GB:Q38JU2); similar to unnamed protein product [Vitis vinifera] (GB:CAO43953.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79842.1); contains InterPro domain Cryptochrome, DASH (InterPro:IPR014133); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050 Range:  from: 8535285    to: 8538110    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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