Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------MYB59        <---------MYB46(2)         --------->ANAC46      ------->TEIL                 --------->ANAC58  <---------ARR11(3)               --------->ANAC58                      --------->CCA1(2)        ---  --------->ARR11(3)        --------->MYB52(1)                        --------->ANAC46            --- ---------->ARR10   --------->HSFB2a(2)                               --------->ANAC58        <------ ----ZmHOX2a(1)     <-----------RAV1(2)            ------>ZmHOX2a(1)  --------->ANAC58       -------- ----RAV1(2)        <---------HSFB2a(2)  ------->GAMYB        --------->YAB1   <------ZmHOX2a(1)  ---   ggaagatgtgcctaactcaactccagaaggtaactgtaagcaacgctcgagtcctgaaactgaatcatcgacaagaaacgaggacgaagaagctctaacg  8458400          --------->At4g35610          --------->ZAT2          <---------At4g35610     <---------------------WRI1   <---------TGA1a   --------->TGA1a   ----------->HVH21   --------->ANAC46                          ----------->GT1   --------->O2                              <------MYB83   <---------O2                 --------->ALFIN1 ------>ANAC58            --------->MYB52(1) <------MYB46(1) ------>ANAC58        <------NtERF2          <---------ANAC55(2)          --------->ALFIN1 ---TOE2(3)      --------->ANAC58           --------->MYB59          --------->MYB52(1)  ------->GAMYB ->MYB52(1)      --------->ANAC58<---------ZAT18                    --------->CCA1(2)    ============ ------>ANAC46   --------->ANAC46--------->ZAT18                <------ZmHOX2a(1) ----------->HVH21   aagccacgacggagcttacaaggcagagtaacgagtggacgagggataggtaaacagggtttgagaggagataagggtttgggagcgacaacgctctgaa  8458500                                                                                              <------                     <---------LBD16                                                          <------NtERF2                <----------DOF2                                                          --------->DAG2               <---------ANAC58                                                         ---------->DOF2               <---------ANAC58                                                        ---------->DOF2          <---------TGA1a                                                          <---------HSFB2a(2)          =================bZIP_DOF                                                --------->HSFB2a(2)          <---------bZIP60(2)           <----------DOF2                        <---------ANAC58          <---------O2               --------->ANAC58                          <---------ANAC46       ----------->HVH21<------ZmHOX2a(1)                                    --------->ARR11(3)   --- ===================MYC_MYB          --------->ANAC58           <----------DOF2<---------ANAC58   <--   acaccatatgtgacatggctttaccaggattaaaaacccaagctttgattccgataaatattcaagcttttttggtgaatttcttgtagaaaaggcgcag  8458600                                                  ---------->DOF2                                                <------ZmHOX2a(1)                       --------->YAB1 ----CDC5                               ---------->DOF2                                <---------ATHB12 ------>ZAT14                        ------------------------>ANAC81                 --------->WOX13(1) -------ZAT14                       ---------->DOF2      --------->CCA1(2)<------ZmHOX2a(1)   agcagagcctatttcttctctcttagggctgagagagagaaagaaagagaggaaaagagagatgagaaggaagagaggatttatcgccaatcagacgatt  8458700                                       ------>MYB46(1)                                       ------>MYB83           ------->GAMYB             --------->MYB46(3)                                <---------MYB52(1)         -------->P  <---------DAG2  <---------MYB111(1)        --------->WRKY38(1)   --------->At5g28300        ------->GAMYB<----------DOF2 --------->AtMYB61          --------->WRKY12      <-------GAMYB <       --------->MYB46(3)            <---------ALFIN1 *TSS     <--------P ----------->GT1<-----------       <---------MYB55(2)   <---------DAG2      --------->TOE1(3)    <-----------RAV1(2)<---------MYB46(3)       <---------MYB111(2)  <----------DOF2 ---------->DOF2    <---------WOX13(1) ------------>MYB.PH3(1)   tcagaaacaacaacccaatctcgcttttctctttttgcaccaactcaaaagcttaaacacttctggttgactcagagggttttaagacggttattgacat  8458800                                   <---------AtLEC2                            <--------ATHB1                            --------->YAB1                   <---------AHL20(2)                   --------->AHL20(2)                  <---------AHL20(2)       ------------>CBF    <---------ATHB12                                      ---------->DOF2  ----------->RAV1(2)      --------->ICU4                                  <------ZmHOX2a(1) -----------GT1   --------->AHL20(2)                 <----------ID1       ----------->GT1 -CBF<-----------HVH21 ------------>CBF   <---------ICU4     <-------TEIL----------->GT1            -   ttacacctgtccaatggaaattaaattcaatgatttttcatgaaatattacaaaaaaaacaaattcatatcgaagtaggaaaaaaaagaaactactactc  8458900                --------->YAB1               <---------ATHB12                                                     <---------AHL20(2)               <<<<<<<<<ARR2                        <---------ICU4      <---------AHL20(2)               <<<<<<<<<ARR1                     --------->YAB1         --------->YAB1     --------->ANAC58                         --------->YAB1            --------->AHL20(2)     --------->ANAC46                         <---------ICU4         --------->YAB1<---------AHL20(2)     --------->ANAC58                        <---------YAB1         --------->AHL20(2)   <-----------GT1                         --------->YAB1           <---------AHL20(2)  --------->YAB1  <---------REM1(2)     --------->GLK1(2)<---------------------WRI1--------->AHL20(2)   ----------->GT1 -------->ZAT14<---------YAB1         --------->MYB52(2)     --------->ANAC46      --------->AHL20(2)   agtttacacgcttcacaatcatagataatctcagagaggtttgtttgataataacaatgacacaaaccatttaataatatgccaaataaatgataaaaaa  8459000                                                                     ---------->DOF2                                                                 ------->TEIL                                                            --------->YAB1                          -                                                           <---------YAB1                          --                                                          --------->AHL20(2)                >>>>>>>>>RAP2.2                                                          --------->AHL20(1)            --------->ARR11(3)                                                          <---------AHL20(2)            --------->AHL20(1)                                                         --------->YAB1                 <---------AHL20(1)                                                     <---------AHL20(2)           <---------YAB1   <-                                                     --------->AHL20(1)        --------->ICU4  ------                                                     --------->AHL20(2)     <---------YAB1<---------ARR11(3)                                                    <---------AHL20(2)    <----------DOF2<---------CCA1(2)                         ---------->DOF2            --------->AHL20(2)--------->DAG2    <---------ARR11(3)   acacaaaaaaaaaaacttgacaatacaaaaagactaaacacattaaactctcaattaaattataatgaacataaagctttgattatgaaatatatctaaa  8459100                                 <---------ANAC46                            <------ZmHOX2a(2)                       --------->GLK1(2)           <---------MYB52(1)------>ZmHOX2a(2)                      --------->ARR11(3)         <-----------RAV1(1)<---------HSFB2a(1)                     <---------ARR11(3)      <--------  <-----------GT1           --------->HSFB2a(1)           --------->ANAC46           <---------YAB1 -------->CCA1(2)          <---------ARR11(3)             --------->ANAC58       <---------ANAC58 ------->ARR11(3)          <---------ARR14(2)             --------->ANAC58   <---------ANAC58  ------ --------ARR11(3)          --------->ARR14(2)         --------->AtLEC2       <---------ANAC58 ------- ---->DOF2<-------GAMYB    --------->ARR11(3)    <-----------GT1--------->YAB1   <---------ANAC58  <-   agatatacactctgttgtcttcgttttgggatcttctgtgaaaacttggtttagccattcaagaaatcaaaatctattggctggcttcttattggagggt  8459200                                                                          <-------GAMYB                                                                        <------NtERF2                                                                       ------>NtERF2                                                                      <---------DEAR3(1)                                                                     --------->ATERF1(1)                                                                     <------NtERF2                                                                     --------->RAP2.3(1)                                                                    <---------DEAR4(2)                                                                    ------>NtERF2                                                                    <---------ORA47(2)                                                                    <---------RAP2.3(1)                                                                    <---------RRTF1(1)                                                                    <---------RAP2.6(1)                                                                   <---------RRTF1(3)               <                                                                   <---------RRTF1(2)           <----                                                                   --------->ALFIN1            <-----                                                                   <---------RAP2.3(3)        <------                                              <-----------RAV1(1)  <---------RAP2.3(2)       --------                                   <---------MYB46(3)              <---------ATERF1(2)       <------NtERF2                                   <------MYB46(1)                 --------->ATERF1(2)     --------->ALFIN1                                   <------MYB83<-------GAMYB       <---------DEAR3(1)      <---------DEAR3(1)                    --------->At4g35610     --------->ZAT14       --------->ATERF1(1)    --------->ZAT2 ----------->GT1    <---------At4g35610     <---------At4g35610<-----------RAV1(2)       <---------At4g35610 <---------MYB46(3)<---------MYB46(3)       <---------ZAT14  <-----------HVH21           --------->At4g35610 -ANAC46          <--------P     <---------MYB52(1)      <------------MYB.PH3(1)         <---------O2 --->At5g28300  <---------MYB46(3)<---------AtMYB61 <---------ANAC58<---------ERF1    <-------TEIL<-- ---->GT1 <---------CCA1(2)     <-------GAMYB =============================RAV<---------YAB1<-------- --------WOX13(1)<-------GAMYB <-----------RAV1(1)  <---------ANAC58<---------ATERF1(1)<-----------RAV1(2)   aattggttactcgtctctcggttgctgcattctctgttggtttcactgctgttgtcgtaacagtttcaggcggcgctgttgtaataggttcaggtggcgc  8459300  Previous    Next  AGI:  At5g24690.1    Description:  similar to RER1 (RETICULATA-RELATED 1) [Arabidopsis thaliana] (TAIR:AT5G22790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24736.1) Range:  from: 8455460    to: 8458754    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g24710.1    Description:  similar to hypothetical protein OsI_003062 [Oryza sativa (indica cultivar-group)] (GB:EAY75215.1); similar to hypothetical protein OsJ_002759 [Oryza sativa (japonica cultivar-group)] (GB:EAZ12934.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45337.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 8458850    to: 8468176    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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