Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    =================================HOX2a_HOX2a                   --------->DEAR3(1)                <---------ARR11(3)                                               --------->TOE1(2)                --------->ARR11(3)                                               --------->TOE2(2)               --------->YAB1                                                   --------->MYB46(3)    <---------ANAC46         --------->DAG2 ------>ZmHOX2a(1)                   --------->DEAR3(2)<-- ---------GLK1(1) ------>ZmHOX2a(2)         --------->LBD16            <---------ANAC46 <---------ALFIN1   tgaattctgtgtagctatgatcttgtggcataaggcaaactgattcctgaagttggaacatcgttctctggttcagtagagaaccgacgaacacccttcc  8447700     ------>NtERF2    ----------->HVH21       <------ZmHOX2a(1)    --------->DEAR3(1)<---------At4g35610                             <----------DOF2        -------- -------ALFIN1    <-----------GT1            ---------->ID1      --------->YAB1  --------->YAB1   ccatctccgacgatgttgtttttctgcttaggacacaagtttgttttgttttttttctcttaaactttcatactttcacacactcataagtttacacaca  8447800                                      ------>MYB46(1)                            <---------HSFB2a(2)                                      ------>MYB83                               --------->HSFB2a(2)                            <-----------GT1                              --------->TOE2(3)                 --------->GLK1(1)   <---------ALFIN1         <-----------GT1    --------->HSFC1(1)                 <---------GLK1(1)  --------->MYB46(3)  --------->TOE2(3)--------->TOE1(3)      --------->AHL20(2)    --------->ANAC46      --------->TOE2(3)      <---------MYB59 ->ANAC46    <------ZmHOX2a(1) --------->AtMYB61  --------->TOE1(3)   <-----------GT1               -   ttacacatatatataggagatttcttctactcaccatacccactctcttagaccttaaacttagtcactatttaaccttacttctagacattagacttag  8447900                                         ------->GAMYB                         --------->TOE1(3)    <---------MYB111(1)              --------->ANAC46         -------->P          --------->TOE2(3)           ------->GAMYB          --------->TOE1(3)      <---------MYB52(2)        -------->P       --------->TOE2(3)    --------->MYB46(3)    --------->ANAC46--------->AtMYB61<---------MYB55(2)    --------->ANAC58--------->TOE1(3)--------->MYB46(3)--------->TOE2(3)    --------->ANAC58    --------->ANAC58<---------DAG2   <---------MYB111(1)                    --------->ANAC58       -- -------->CCA1(2)   --------->TOE2(3)<---------MYB111(2)                --------->YAB1          -----   ggatacaagcaaccttacacaaccttaccttagccactaacaaccccaactactctacctcaagtacttagctagaataagctacttctacgaatgggcc  8448000                                                                                                    -                                                                                                <<<<<                                                                                           <xxxxxxxxx                                                                                          <<<<<<<<<TBF1                                                                                        <xxxxxxxxxxxx                                                                               <---------------------                                            ------------>CBF         --------->O2      <<<<<<<<<TBF1*TSS                <---------ALFIN1          --------->At4g35610       ------>MYB83  <xxxxxxxxxxxxxxxxxx             <-----------GT1 --------->ANAC46     <---------TOE2(3) ------>MYB46(1)  <xxxxxxxxxxxxxxx --------->RAV1(1) <----------DOF2     --------->At4g35610         <---------ALFIN1 <<<<<<<<<TBF1  << ------>RAV1(1)<-----------------AGL1  <---------At4g35610   ---------->DOF2  ---------->ID1 <<<<<<<<   acaacaaaacatacttcaccactttgggcctacacaacttcatcagcccaataagataaaacataaaacccacttctcttgtcttcttcttcttcttctt  8448100             --------->TGA1a             --------->ANAC58             <---------O2             <---------TGA1a             --------->ANAC58     <<<<<<<<<TBF1  <<<<<<<<<TBF1 ---------------------->TaNAC69(2) <<<<TBF1    --------->O2 xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(se3)                                                    <-----------GT1 ---ANAC81   --------->ANAC46                                         <---------YAB1 xxxxxsmallRNA(se3)                                                 <---------ICU4 xxxxxxxxsmallRNA(se3)                                             --------->ICU4                   < <<<<<<<TBF1 --------->ANAC55(2)                                   <---------YAB1<XXXXXXXXXXXXXXXXXXX <TBF1       <---------ANAC55(2)     <<<<<<<<<TBF1  <---------ATHB12--------->ATHB12             <<<<   cttcttcttcttctcacgtctctctcttacgtcgtcttcttcttctagtttccaatcttcttgttcttcatcattgttgtttccttctcactgatgttct  8448200                                                                                                 <---                                                                                                <----                                                                                              <------NtERF2                                                                                             ------>NtERF2                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                --------->WOX13(1)                                                         --------->DEAR4(2)              <------ZmHOX2a(2)              --------->AtMYB61         --------->At4g35610 --------->RAP2.3(1)            <------ZmHOX2a(1)         ------->GAMYB                    <---------At4g35610 --------->ORA47(2)     <----------DOF2                 --------->MYB46(3)           --------->At4g35610      --------->ERF1 <<<<<<<<TBF1<---------ARR11(3)     --------->At4g35610           --------->ZAT2           --------->ATERF1(1) XMIR824 <---------AtLEC2           <---------At4g35610        <---------At4g35610        <---------RAP2.3(1) <<<<<TBF1<---------TOE1(2)     --------->TOE2(3)              --------->At4g35610 <-------TEIL<-----   tcttcttctttgcaggatcaatcggagagttcaatctcaacagacgaccataccctcgatacagtagctgctccgctcatcaacgtccatttcgccgcct  8448300      <---------DOF5.7(2)     <---------WRKY38(1)     <---------WRKY12    --------->DOF5.7(2)    <------NtERF2   <---------RAP2.6(3)        --------->SPL7   <-----------HVH21        <---------SPL7  --------->RAP2.6(2)      <---------ANAC46                                                  <------- ------MYB52(1)            <---------ANAC58         <----------DOF2                          -------- ------DOF2                <---------ANAC58      <---------ANAC46                        <----------DOF2 >DEAR3(1)                --------------->AtSPL8 <---------ANAC58                      <----------DOF2 >RAP2.3(3)               --------------->AtSPL3 <---------ANAC58                 --------->SPL7 >RAP2.3(2)           <---------At4g35610       <------NtERF2                   <---------SPL7 >RAP2.6(2)           <-------GAMYB   --------->TOE2(3)                        <---------ANAC58 ----DAG2            <-----------RAV1(1) ---------->DOF2                       <---------ANAC58   ttagccgtcaacgttctctggttctgttgccgtacaaaattcttaaaggtcgcgtttttatgtaagcgtagggtttagttgtcgtcccgctctttttaat  8448400                                                      --------->At4g35610                                                      <---------ZAT2                                                      --------->ZAT2                                               <---------ANAC46                                               <---------TGA1a                                               --------->O2                                               <---------O2                                               --------->TGA1a                  <------MYB46(1)              <---------bZIP60(2)                --------->GLK1(1)                  ----------->GT1              ====================================bZIP_DOF                  <------MYB83                 <---------ANAC58         <----------DOF2                 <---------TOE2(3)             <---------ANAC58         <---------DAG2            <---------AHL20(2)                <------NtERF2            <---------DAG2            --------->AHL20(2)               ------>NtERF2 <---------ANAC46     <---------ZAT18           <---------AHL20(1)               --------->DEAR3(1)        ----------------->AGL1    ----------->GT1                         ----------->HVH21        ---------->ID1           ------>ZmHOX2a(1)  <----------DOF2--------->MYB59            <---------DEAR3(1)      <---------WRKY18(1)   ------>ZmHOX2a(1) --AHL20(2)<---------AHL20(2)      <---------MYB59    <---------At4g35610       --------->ZAT14 ->AHL20(2)--------->AHL20(2)     ----------------->AGL1xxxxxxxxxxxxxxxx>smallRNA(s)   ------>ZmHOX2a(1)   tagactttgttaatttaattaggttaattagataagacctaaaacggcgacgtgtaagctgtcgtcttcttgacctttttggtgaactcctccttcctct  8448500                                                                                      <-----------GT1                                                                                   <---------ICU4                                                                                  --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                                 <---------WOX13(1)                                   <---------ANAC58                            -------->HAHB4                            <---------ANAC58  <---------ARR11(3)               --------->ATHB12                            <---------ANAC46--------->ANAC58                   <---------ICU4                            <---------ANAC58--------->ANAC58                   --------->YAB1     <--                 <---------ANAC46  <---------AtLEC2                           <---------ATHB12    <--                 <---------ANAC58  <---------ANAC46   <---------ANAC58        --------->ICU4     <---                 <---------ANAC58  <---------ANAC58   <---------ANAC58        <---------YAB1    <----                ------>NtERF2 <-----------RAV1(1)     <---------ANAC46      --------->YAB1   <-------   ctatcggctatcgctcgctgcgtctctgtgtcttgttgcttggagcaagctctccagcgtgagttaatctaatctctgtaatgattaattaccttctttt  8448600  Previous    Next  AGI:  At5g24670.1    Description:  hydrolase/ zinc ion binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO44514.1); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Cytidine deaminase-like; (InterPro:IPR016193) Range:  from: 8448100    to: 8451221    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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