Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <------NtERF2   --------->LBD16   ------>NtERF2  --------->ATERF1(2)  --------->DEAR3(1)  <---------DEAR3(1)  <---------ATERF1(2) <---------LBD16                                           <------MYB83 --------->ATERF1(1)                                       <---------MYB46(3) --------->DEAR4(2)                               ------->GAMYB <------NtERF2                                    --------->At1g77200 --------->RAP2.3(1)                              --------->DREB2C(2) ----->NtERF2                                     ----------->HVH21 ---------RAP2.3(1)                           --------->REM1(1)   --------->ALFIN1 ---------ATERF1(1)                       <---------At4g35610   <---------ANAC46 --------DEAR3(1)                         --------->At4g35610   <---------ANAC58 ------->ETT(2)                          --------->ANAC58  <------MYB46(1)--------->ANAC58 --------HVH21                           --------->ANAC58 --------->ALFIN1--------->ANAC58 -------RAV1(1)                         --------->SPL7    <---------AtMYB61 ---->ALFIN1                           <---------MYB52(1) --------->MYB111(2) ---O2                                <---------SPL7      <---------MYB46(3) ---TGA1a                           <------NtERF2--------->DEAR3(2)    <---------ARR14(2)           < -->O2                            <---------DEAR3(1)      --------->MYB111(1)  <---------WRKY18(1)<-- -->ANAC55(2)                    --------->ATERF1(1)     <--------P    --------->ARR14(2)         --- ---ANAC55(2)               --------->MYB52(1)--------->MYB46(3)<---------ANAC58               ------ -HVH21      --------->ALFIN1   <-----------HVH21--------->MYB46(3)   <------ZmHOX2a(1)---------->CDC5   gtcgccggctatcaagtcgggccataaatctaagggtcgccgtaagctacaaccgacaagttggtggagtgaggataagctagaccggctcatcgggtcg  8436700                                                                         --------->ATHB12                                                                        <---------YAB1                                                                      --------->YAB1                                                                     --------->ICU4                                                                     <---------YAB1                                                                   <---------ICU4                                                                   --------->YAB1                                                                  <---------YAB1                                                                <---------ICU4                                                             <--------ATHB1                                                            --------->ICU4                          <---------GLK1(1)                 <---------YAB1                         --------->ARR14(2)                 <---------ATHB51                 <---------CCA1(1)                        --------->YAB1--------->ICU4                 <---------RVE1(1)                      <---------YAB1<---------ICU4               <------ZmHOX2a(1)                  <---------YAB1--------->YAB1               ====================================HOX2a_HOX2a --------->ICU4         --------->At4g35610                    <---------ICU4 <---------YAB1         <---------At4g35610                   <---------YAB1-------->HAHB4      ------>ZmHOX2a(1)  <---------ARR14(2)    --------->ICU4--------->YAB1 -------TEIL <---------TOE1(3)               --------->YAB1 --------->AHL20(2) -------ARR14(2)<---------ARR11(3)          <------ZmHOX2a(2)--------->ATHB51   ------->GAMYB ------>ARR14(2)--------->ARR11(3)         --------->ARR11(3)<---------ICU4    --------->MYB46(3) --->ETT(1)  <---------TOE2(3)             <---------ARR11(3)<--------HAHB4  <-----------GT1   gattcatcctctgctaaggatattttggatatgttatgtagtgaagatcatgatgagtattaataattatcatgatgattaaccatctcgtttaagatgt  8436800                                                        <---------ICU4                                                        -------->HAHB4                                                        --------->ATHB12                                                       <---------ATHB51                                                       --------->ICU4                                                       <---------YAB1                                                     -------->HAHB4                                                     <--------ATHB1                                                     <--------HAHB4                                                     --------->ATHB51                                                     --------->YAB1                                                     <---------ICU4                                                    <---------------AGL15                                                    --------->AHL20(2)                                                    <---------ATHB51                                                    --------->ICU4                                                   <-----------------AGL3                                                 <---------YAB1           --------->YAB1            <                                               --------->YAB1            <---------YAB1            --                                              ----------->GT1  --------->ANAC58            --------->ANAC58              <---------AHL20(2)              --------->ICU4   --------->ANAC58<----------DOF2-------    <---------YAB1 <---------AHL20(2) --------->YAB1<---------YAB1       --------->ICU4    --------->ANAC58 <---------YAB1<---------AHL20(2)  <----------DOF2--------->YAB1    ----------->GT1      ---------->DOF2   atgaagattattgttttttattttatatatgtttgaactttcatagaaatgataataattatgggaagaaatgtaattatacttttgtgtcaaaagcaat  8436900                                                                          <---------YAB1                                                                        --------->YAB1                                                                        <---------ICU4                                                                       <---------YAB1                                                                       --------->ICU4                                                                     <--------HAHB4           <-----------GT1                       --------->At5g28300 --------->YAB1      <---------AHL20(2)                        ----------->GT1     <---------YAB1      --------->DAG2 ---------TOE2(3)                               ------->GAMYB       --------->ICU4     ---------->DOF2 ------->MYB52(1)                            --------->MYB52(1)------->TEIL        <------NtERF2   <- -->WOX13(1)       ----------->GT1    --------->ALFIN1      <---------REM1(1)    ----------------->AGL1   ctaacgattttttttacaaaattgtaaaatgaataacatggtgttggcaacggtaaaaaaacatgtagctattattattatgggccgaataaagtaatgt  8437000                                                --------->ARR14(2)                                             <---------ANAC55(2)                                             --------->ANAC55(2)                                    <---------MYB52(1)                                   ----------->GT1  --------->LBD16    <---------YAB1                 --------->LBD16--------->DEAR3(2)   <---------AHL20(2)     --------->YAB1     --------->ANAC58   --------->AHL20(2)     <--------ATHB1     --------->ANAC58   <---------AHL20(1)    <---------ATHB12    --------->ANAC46                           *TSS       --  --------->YAB1         <---------ATHB51    --------->ANAC55(1)               >>>>>>>>>TBF1       -- <---------YAB1      ------------>CBF       <---------LBD16              <------ZmHOX2a(1)     ------ --------ZAT6      ------>NtERF2 <---------LBD16<---------ARR14(2)   --------->CCA1(2) ---------->DOF2   agtattataatgggcaaatgaggcccaataatacatccggtagaaacacggaaccggcataaatgagggagataaggagaagaagaagcgaaagaataaa  8437100                                                                                               ------                                                                                               ------                                                                          --------->At4g35610 <------ ----------->HVH21                                                 <------NtERF2            ------->GAMYB ------->ALFIN1             ---------->DOF2     ---------->DOF2  <---------DEAR3(1)      ----------->RAV1(1) --------->GT1       --------->CCA1(2)    <----------ID1         <---------DREB2C(2)   <------ZmHOX2a(2) ---->DOF2      ----------->GT1          <------ZmHOX2a(1)       <---------ANAC46    <------ZmHOX2a(1)   agtgtgacaaattaagaagagagaaatggggaaagacggagaaggagacaagaagcgagaaacaatggcggtgatgagcttaatgaaggatcaacagaat  8437200                                                                                        <---------MYB52(1)                                                                                       <-------GAMYB                                                                                    ------>NtERF2                                                                                   --------->RAP2.3(2)                                                                                   --------->RAP2.6(2)                                                                                   --------->DEAR3(1)                                                                                   --------->RAP2.3(3)                                                                                  --------->ERF1                                                                                  --------->ATERF1(1)                                                                                  --------->DEAR3(2)                                                                                  --------->RAP2.3(1)                                                                                 <---------ATERF1(1)                                                                                 <---------At4g35610                                                          --------->YAB1         --------->At4g35610                                                    <---------MYB46(3)      --------->ALFIN1  -------                                                 <---------ANAC58      <---------DOF5.7(2)    ------- --->GLK1(2)                                     <---------ANAC46      <---------At5g28300   <------- --->ARR14(2)                                    <---------ANAC58     <-----------GT1<------NtERF2 ---GLK1(2)                            ----------->GT1   <---------YAB1--------->MYB52(1) <----------   ccaattcaacagtttcaagtcaaattcaaggagattgagactggtttcaagtcgtggttatcaaaacagaagttaccggtggaagccgccgttgtcacgg  8437300       <---------ANAC46     <------MYB46(1)     <------MYB83              <----------DOF2    <---------AtMYB61        ----------->GT1    <---------DEAR3(1)       --------->MYB55(2)     ------>ZmHOX2a(1)    --------->ALFIN1         <---------MYB46(3)     --------->LBD16                              ---- -->ANAC58         <----------DOF2         <----------DOF2          <------MYB83          <---------ANAC58 -->ANAC58 <---------LBD16  <---------AtMYB61     ----------->RAV1(2)             --------->ANAC58 -- --At5g28300     <---------At4g35610       <---------DAG2     <-----------RAV1(2) --------->ANAC58 -- -HVH21<---------ZAT6      <---------MYB52(1)     <---------LBD16   <------MYB46(1)       <---------ANAC58   ccatgggtggtgttcagggagcttttatcggtggtttaatgggaactttatctcctgaaatgcctcaggctggtattgaccctcaagctatggcttcgct  8437400                       --------->TOE1(3)                     --------->AHL20(2)                       --------->TOE2(3)     <---------bZIP60(1)    =================================        <---------TOE2(2)                    --------->bZIP60(1)    <---------------AGL15       <-----------RAV1(2)        <---------WOX13(1)<-----------HVH21   <---------AHL20(2)          - ------>DOF2 <---------AHL20(2)<---------YAB1<---------TGA2(1)--------->ATHB12                      < ------->ANAC58     <-----------GT1          --------->TGA2(1)<---------ICU4                        - ------->ANAC58   <---------AHL20(2)<-----------GT1<----------DOF2  --------------->AGL15           <   aaagcaaactcaggtttaatttaaaccctaattttgatttactggttatgtcactttcagccatttattgctattttttgaagtttttgatttttgactg  8437500                             <---------MYB46(3)                           <---------MYB52(1)                         <----------DOF2                       <---------PCF2                <---------------AGL15                 <---------AtMYB61     --------->ANAC58                <--------P<----------DOF2       <---------At4g35610              <-----------RAV1(1)      --------->ANAC58                                    --------->MYB52(1) ====================================================================MADS_MADS          <---------YAB1 -------->AHL20(1)    ----------->TCP11(1)   <----------DOF2  <---------ZAT6       <---------ZAT6 ---------AHL20(1)<---------MYB46(3)  <---------LBD16<----------DOF2           <---------ANAC58 -------->AHL20(2)<------MYB83      --------->ZAT2  <-----------------AGL3     <---------ANAC58 ---------AHL20(2)<------MYB46(1)   <---------ZAT2  <-----------------AGL2     <---------ANAC46   aatttattgtaggctcttgttggtgggcctttggttcaagctcggaactttgctgctataactggtgttaatgctggtattgcttgtgttatgaaacgga  8437600  Previous    Next  AGI:  At5g24640.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14635.1) Range:  from: 8436379    to: 8436865    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g24650.1    Description:  mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein. similar to mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana] (TAIR:AT3G49560.1); similar to H0502B11.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66528.1); contains InterPro domain Sterile alpha motif SAM (InterPro:IPR001660); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) Range:  from: 8437088    to: 8439107    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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