Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <---------ANAC58                    <---------ANAC55(2)                    <---------ANAC46                    --------->ANAC55(2)                    <---------ANAC58                    <---------bZIP60(2)                  <---------TGA2(2)                 ----------->TGA1        <-----------HVH21      --------->HSFC1(2)      <---------HSFC1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->At4g35610<-----------------------TaNAC69(2) ---------At4g35610----------->STF1                                                                <- -----MYB52(1)   ----------->HVH21                 <---------ANAC58        <---------AHL20(2)      <- ----DEAR3(2)   --------->SPL7                     <---------ANAC58    --------->AHL20(2)          -- ---DEAR3(1)  --------->LBD16                      <---------ANAC46   --------->ICU4               -- -RAP2.3(1) <---------LBD16    <--------P    <---------YAB1           <---------YAB1              ---   tgagcagaagcttcaccggatgacgtagtaagggtagactcttcgatattagtgcttggaagagttttagtgattatttagtttgtgatatacacttacg  8365200                                         --------->TOE2(3)                             --------->DAG2                               <---------ZAT14                           ---------->DOF2       <---------------AtSPL8   --------->ZAT14      <---------TOE2(3)  --------->YAB1  <-----------HVH21                <---------ZAT18 --------HSFC1(2)       <---------ATHB12--------->ANAC58                  --------->ZAT18 --------HSFB2a(1)    --------->WOX13(1)--------->ANAC46                 <---------------AGL15 ------ ------->HSFC1(2)    <---------WRKY38(1)--------->ANAC58                 ============================ ------->HSFB2a(1)  ------------>CBF   ------->TEIL                   <-----------GT1 <-----------GT1 ---->TEIL     --------->TOE2(3)    <---------YAB1                   --------->AHL20(2)  ------------   aattttctaatgttgaacattagtcaatgaaaaggtttatgaacgtcagtactagtacatactaaactaaatttactacactaagaaattaccacaaaaa  8365300                                                                                      --------->MYB52(1)                                                                                    <<<<<<<<<<AtMYB44                                                       --------->YAB1               <---------MYB59                                                      <---------YAB1                <---------MYB52(2)                            <---------GLK1(1)      <---------AHL20(2)               <---------MYB46(2)                 <---------AHL20(2)               <---------AHL20(2)                <------------MYB.PH3(2)                 <---------AHL20(1)               --------->AHL20(2)              <-----------GT1        --------->YAB1 <---------LBD16      --------->TOE2(3)                     ------->TEIL --->YAB1        --------->AHL20(1)         --------->TOE1(3)                   <xxxxxxxxxxxxxxxxxxxx ====MADS_MADS   --------->AHL20(2)       <---------ARR11(3)         ---------->DOF2<---------MYB111(1) --->AGL15      --------->AHL20(2)        --------->ARR11(3)   <-----------GT1 --------->ANAC55(2)   ttatgtagaattatcaaattttatttgtggaaatgtgaatgtaagaccttaattttatgaaaattttacaacaaagaattcatgtaactaactaatttct  8365400                                                                               --------->ZAT14                                                                               --------->ZAT18                                                                               <---------ZAT18                                                                       ----------------------->TaNAC69(2)                         --------->AHL20(2)                      ---------->DOF2             --------->AHL20(2)                                 <---------AHL20(2)               ----             <---------AHL20(2)                                 --------->AHL20(2)              <----            --------->AHL20(2)                 --------->ANAC55(2)<---------TOE2(3) --------->ANAC46 xxxsmallRNA(se3)      ----------->GT1    <----------DOF2---------->DOF2<---------ZAT6          -----   catatagaaactaaattaatcttgtaagtaaattaagtctcatactttcatgtaatgccaaaagaattaaagaagtgatagtgaacacacatctcaaatt  8365500                                                                                         <---------DAG2                                                                                         --------->TOE2(3) <----------ID1                                                                     <-----------GT1-- ------>DOF2                   ----------->GT1                            ------>ZmHOX2a(1)        <- -----AHL20(2)            ---------->DOF2------------>CBF                --------->TOE2(3)         <- ---->AHL20(2)        ---------->DOF2   <-----------GT1                <---------YAB1 <-----------GT1   aaagggactaatttgtaagaaatggaaagaaaggggtttatttcacaattcttctcgttttgcatatgtcatcatccttatccatttttcaccttatcca  8365600                                                                      <---------ARR14(2)                                                                      ------->TEIL                                                                      <-----------ARR10                                                                      --------->ARR14(2)                                                                      --------->GLK1(2)                                                                      <---------ARR11(1)                                                                ------>ZmHOX2a(2)                                                               --------->CCA1(2)                                                               <------ZmHOX2a(2)                                                              <---------AGP1                                                              --------->AGP1     <-----------GT1                                          --------->ARR14(3)    <-----------GT1                                           --------->ARR14(2)    *TSS      <----------DOF2                                 <---------ARR14(2) <---------AHL20(1)                                           <---------ARR11(3) --------->ARR11(3)                                           <---------ARR14(3) <---------ARR11(3)                                           --------->ARR11(3) --------->AHL20(1)                                         ----------->ARR10 ------->AHL20(1)                                       ----------->GT1 --------ARR11(3)         --------->ZAT14             ---------->DOF2<---------ARR14(1) --------AHL20(1)  --------->ZAT6                 --------->At4g35610<---------CCA1(2)             <-   aaatattttccacttcctttctcactacttcagtcttcaagcttcacttctcagaagaaagtaagatctgcgaatctctctcactctcacaaatggcaac  8365700                                      <------NtERF2                                     <---------SPL7     <---------ANAC58                                     ------>NtERF2      <---------ANAC46                                    <---------DEAR3(1)  <---------ANAC58                                    <---------ANAC46    --------->DEAR3(1)                                    <---------ANAC58   --------->ATERF1(1)                                    <---------ANAC58   <------NtERF2                                   <------NtERF2     --------->RAP2.3(2)                                   --------->RAP2.3(1)------>NtERF2                                   ------>NtERF2     <---------DEAR3(1)                                   --------->ATERF1(1)--------->ABI4(1)                                  <---------RAP2.3(1)--------->RRTF1(3)                                  <---------RRTF1(1) --------->RAP2.3(3)                                 <---------RAP2.3(3) --------->DEAR3(1)                                 <---------RRTF1(3) --------->ATERF1(1)                                 <---------RRTF1(2) --------->ERF1                                 <---------DEAR3(1) --------->ORA47(2)                                 <---------ANAC46  ------>NtERF2                                 <---------RAP2.6(2)--------->RAP2.6(1)                                 <---------RAP2.3(2)--------->RAP2.3(1)                                <---------LBD16    <---------RAP2.3(1)    --------->ANAC46                            --------->ATHB12       <---------ATERF1(1)    --------->ANAC58   <---------TOE1(3)        <---------ICU4        --------->ANAC46        --------->ANAC58   <-------   <---------TOE2(3)       <---------YAB1   --------->GLK1(1)            <---------LBD16     <------- ---------DOF2           <-----------GT1    <---------GLK1(1)            --------->LBD16  <---------ZAT18   gcttttaggtttctctcagactaagtttcaccattgcggcgtctggatttctacgccgccgtgctcatcttcttccacggtagtctcaatggtgggcttg  8365800                                             <---------MYB46(3)                                             <------MYB83------>ZmHOX2a(2)                                           <---------WOX13(1)                                          --------->ARR14(2)                                          <---------GLK1(2)             ------------>AtMYB77                                      ----------------->AGL1     --------->ANAC58                                     ------>NtERF2      <------ZmHOX2a(2)                                  ------>ZmHOX2a(1)    --------->ARR14(2)                                  ==============================HOX2a_HOX2a                                  =============================HOX2a_HOX2a                            <---------GLK1(2)<------MYB46(1)     --------->ANAC58                            --------->ARR14(2)         <---------ARR14(2)      --------->ATHB12 <---------MYB52(1) <---------ARR14(2)<----------ARF1                     <---- --ANAC58      --------->DAG2<---------GLK1(1)         <---------ARR11(3)                       ----- --ANAC58     ---------->DOF2--------->GLK1(1)         --------->ARR11(3)      <---------At5g28300---   aatcggactgattcgaaaaagctccgttcagatttcctcggccagattggttacgaagatcggagacaagtaagacacagttactgtagaagctcattag  8365900             <---------SPL7           --------->ALFIN1         <---------ANAC46         <---------ANAC58         <---------ANAC58  <---------ANAC58         <---------bZIP60(2)                      ----------->GT1       <-----------HVH21   <---------ANAC58      --------->ANAC58 -----At4g35610       ------>ZmHOX2a(1)          --------->ANAC46 ---->At4g35610--------->SPL7    <---------MYB52(1)                    <---------GLK1(2)          <-- -------->GT1----------->HVH21  <-----------HVH21--------->ANAC58      <---------ARR14(2)       -----   ctgtgaaaatgtcgtgggacggtcctcttgcttccgtcaagttgatcatccaaggaaaaaacctcgaggtttggattctgctattacacacttgaaattg  8366000                                                                 --------->ATHB12                <---                                                             --------->KAN4(1)                 <-----                                                             <---------HSFB2a(1)           --------->ARR14(2)                                                            <---------KAN4(2)              <---------ARR14(2)                                                          <------ZmHOX2a(1)             --------->HSFB2a(2)  <---------GLK1(2)                    <---------LBD16  <---------TOE2(3)               <---------HSFB2a(2)  <---------ARR14(2)      <---------TOE2(3)        --------->ATHB12                 <----------DOF2 -------WOX13(1)        <---------AHL20(2)        <---------YAB1<-------TEIL     XXXXXXXXXXXXXXXXXXXX ---->ATHB12           --------->AHL20(2)         <---------ATHB51      ---------->DOF2<---------LBD16   attggattctgaacaaaatgttgaattttatgttgagtttttctgggtttcgattattgaggaatgttcattagaaaagttttgaactttctggatactg  8366100  Previous    Next  AGI:  At5g24490.1    Description:  30S ribosomal protein, putative. similar to chloroplast-specific ribosomal protein [Lycopersicon esculentum] (GB:AAU03364.1); contains InterPro domain Ribosomal protein S30Ae/sigma 54 modulation protein; (InterPro:IPR003489) Range:  from: 8365604    to: 8367463    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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