Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <---------ARR14(2)                                                                            --------->HSFB2a(2)                                                                     <---------MYB46(3)                                                                    <--------P --------->ARR14(2)                                                          --------->ZAT2    <---------HSFB2a(2)                                                          --------->At4g35610--------->LBD16     ------>ZmHOX2a(2)          <----------DOF2  ---------->DOF2  <---------MYB46(3)   <---------ARR14(2)           <---------DAG2--------->ETT(1)  <---------ANAC58   --------->GLK1(2)       <-----------GT1   ---------->ID1 <----------DOF2<---------LBD16   --------->ARR14(2)--------->ICU4        <-----------RAV1(1)  <---------ANAC58  <------ZmHOX2a(1)---------->DOF2  ---------->ID1  ---------->DOF2<-------GAMYB--------->GLK1(1)   <   acgaggatcggtctgagacagaaaagatgaaaccctttatcgcatttgtcgcaaagaagcagctttgctggttgtttaccggaactgcattcttcgcaga  8296900                                                     ================================HOX2a_HOX2a                                                     ------>ZmHOX2a(2)                                                    =================================HOX2a_HOX2a                                                    <------ZmHOX2a(2)                                                   <---------ARR14(2)                                                   <-----------ARR10                                                   --------->ARR11(3)                                                   <---------AGP1                                            --------->MYB55(2)                                           --------->ALFIN1                                           <---------DEAR3(1)                                           <---------AtMYB61                            <---------ETT(1)<---------MYB46(3)                            ----------->HVH21<---------SPL7                     --------->YAB1     <---------DEAR3(1)                     <---------ICU4     <---------ANAC58            <---------ARR14(2)          <---------ANAC58            --------->ARR14(2)     <-----------RAV1(1)                                      ------>NtERF2            <---------GLK1(2)      --------->ALFIN1--------->ARR14(2)                      --------->RAP2.6(2)         --------->YAB1<---------YAB1   <---------ANAC46                                  --------->MYB46(3)  <-----------------AGL1   ------>ZmHOX2a(2)<---------DEAR3(2)                          --------->ANAC46 --------->ARR14(2) <---------ATHB12   <---------LBD16       ----------->HVH21       <---------ALFIN1 ------->TEIL  --------->YAB1     <-------MYC3     --------->AGP1                   ----------->HVH21 ---------CCA1(2)   --------->ICU4------->MYC3    <---------CCA1(2)           ------>ZmHOX2a(1)  <---   ctgtatcccaatcggaatcggaatcatgatccgacatgtgttgcggtggttcggatctagggtttgacgcttgtgttctccttcgcctcacagccaccat  8297000                                                                                                    <                                                                                                    <                                                        ------>ZmHOX2a(2)                           -                                                       <------ZmHOX2a(2)                            <                                                       --------->CCA1(2)                          ---                      ---------->DOF2                 --------->AGP1   *TSS                     <----              <-----------GT1                         <---------ARR11(3)                      <------          --------->ATHB12                            --------->ARR11(3)                   <---------ARR14(2) ------ICU4 <---------WOX13(1)              <---------YAB1           <---------ANAC46      --------->ARR14(2)   tcttacacttattgatttaccagagaaagagagagagtgagagattataaatgtgagatctagccgaggttgagtagaagagttcgcgctctggattcac  8297100                <---------AHL20(2)        <---------LBD16        --------->LBD16       <---------ANAC46       <---------LBD16       --------->LBD16      <---------LBD16     <---------LBD16        <---------ALFIN1 --------->GLK1(1)         <------NtERF2 --------->HSFB2a(1)       --------->ATERF1(1) <----------TaMYB80       ------>NtERF2 <---------GLK1(1)        <---------RAP2.3(1) ---------ARR14(2)       --------->PCF2       <---------GLK1(2) -----------ARR10        --------->ANAC46     --------->ARR14(2)                                 ==== -------->ARR14(2)       <<<<<<<<<<E2Fa       <---------ARR14(2)                  <---------GLK1(2) ---------GLK1(2)<---------AHL20(2) <---------TOE1(3)                          <------------MYB.PH3(1) ------>LBD16   --------->AHL20(2)  <---------TOE2(3)                        --------->MYB52(1)  <--- -----LBD16    --------->YAB1      <---------At5g28300   ----------->GT1   <---------MYB59      <---- -----GT1--------->LBD16---------->ID1      --------->LBD16              <-----------GT1     --------   cggattttcccggggaattttaatttggcgccactgttacggtttcccgatttgcagactggtttattttggttttatctaaccgattttgagaaattag  8297200                                 <------MYB46(1)                            <------MYB83                            <------MYB46(1)                     <-------GAMYB                     <---------ANAC58                    <---------MYB46(3)                   <---------TOE2(3)------------>CBF                   <---------YAB1<------MYB83             <---------AHL20(1)  <---------DEAR3(2)      <---------DEAR3(2)    <---------DEAR3(2)     ------>ZmHOX2a(2)     --------->MYB59                           --------->DREB2C(2) ===========HOX2a_HOX2a<---------MYB46(3)              --------->LBD16 ---ZmHOX2a(1)<---------AHL20(2)--------->MYB59     --------->MYB52(1)----------->RAV1(1)    ------->TEIL -----YAB1  <---------CCA1(2) <---------MYB52(1)   <---------ALFIN1 --------->DEAR3(2)------------>CBF ->ICU4  <-------TEIL<---------ANAC58     <---------YAB1       --------->AtMYB61     ------>ZmHOX2a(1)   gattagatcggttcatatattttggttgttcggttcggttcaatttgattatcccaccggacaaaccaaaaccgacataagactctccttcaatgtaact  8297300                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)    ------>MYB83<---------ZAT14                                             --------->ARR11(3)    ------>MYB46(1)                                             <---------ARR11(3)  ------->GAMYB --------->ZAT14                                             <---------AGP1      --------->MYB46(3)     ----------->HVH21                                             --------->AGP1      --------->DEAR4(1)   <---------At4g35610                                         ---------->DOF2         --------->DEAR3(1)   ----------->RAV1(2)                                       >>>>>>>>>RAP2.2           --------->DREB2C(2)  <--------------                   <----------DOF2   ------>MYB46(1)            --------->DEAR3(2)    --------->At4g35610        *TSS  <-----------GT1        ------>MYB83            --------->MYB46(3)--------->ZAT18      <------------CBF              --------->WOX13(1)   <-------TEIL          <---------ZAT18    <--   ttcaactaaattgattttgctctttgaacgatggagaccaatctaaagatctatctagtttcatccaccgactcgtccgagttcactcacctgaaatggt  8297400                                                 --------->ANAC58                                                 --------->ANAC58                                                 --------->ANAC46                                               <---------ALFIN1                                              --------->ZAT14                                              <---------ZAT14        <---------ETT(1)                                       --------->ANAC58           <---------ARR14(2)                             ------>NtERF2--------->RAP2.6(2)     --------->ARR14(2)                            --------->ANAC46--------->ANAC46  <------NtERF2<---------MYB52(1)                --------->YAB1         --------->ANAC46     <---------DEAR3(1)          --------->ANAC46 ---AGL1        <---------ICU4<------NtERF2 --------->bZIP60(2) <---------DEAR3(2)  ------>ZmHOX2a(1) --------DOF2  <------ZmHOX2a(2)       --------->ANAC58  --------->ANAC46 <-----------HVH21        --   ctttcactcgttctacgatcatcgccttagacgccgaatggaagccacaacactccaatacgtcgtcgtttccgaccgtcactctcctccaagtcgcatg  8297500              --------->ANAC58              --------->ANAC58             ------>NtERF2           ----------->HVH21         --------->TGA1a         <---------O2         --------->O2                                                                               -         <---------TGA1a                                                                            <         --------->bZIP60(1)                                                                        <         --------->ANAC58                                                                          --         --------->ANAC46                                                                         <--         <---------ANAC55(2)                                                                 <-------         <---------bZIP60(1)                                                         --------->YAB1<-         --------->bZIP60(2)            --------->ATHB12                           <---------WOX13(1)         --------->ANAC55(2)          <---------WOX13(1)                   <---------ZAT2    <-------         --------->ANAC58           --------->ATHB12                       --------->At4g35610    ---         --------->ANAC55(1)       <---------YAB1                          <---------At4g35610  <----     <-----------HVH21             ------>ZmHOX2a(1)     <---------At4g35610 <---------MYB46(3)<----- ---->NtERF2 <---------LBD16      --------->TOE2(3)   <-------TEIL  <---------MYB52(1)      <-------TEIL   ccgactcagtcacgccacggatgtctccgatgtcttcctcattgatttgagttcgattcatcttccatcggtttgggagctgttgaatgatatgttcgtg  8297600     --------->HSFB2a(1)     <---------HSFB2a(1)    --------->ARR14(2)  --------->LBD16 -------->ATERF1(1) ---------LBD16 ------NtERF2 ---->NtERF2 -------DEAR3(1)                               <---------ANAC58 --ANAC58 <---------HSFB2a(2)                  <---------ANAC58 --------RAP2.3(1)                       <------MYB83 --ANAC58 --------->HSFB2a(2)            <------MYB46(1)                     ----------->HVH21 ------>ETT(2)                       --------->ARR14(2)                   ------->TEIL         ------ -------HVH21                        <---------ARR14(2)          <---------------AGL15<---------ARR14(2) ------RAV1(1)    <---------TOE2(3) <------ZmHOX2a(1)           --------->ANAC46<---------AtMYB61   tcgccggatgttctgaaactagggtttcggtttaaacaggatttggtttacttgtcttcgacatttactcaacatggatgtgaaggtggattccaagagg  8297700                                  <---------ZAT6                                --------->TOE2(3)     <----------DOF2         <---------ANAC46                                <-----------GT1    <---------ANAC58      <---------ANAC58   <---------At4g35610            <-----------GT1<---------MYB52(1)    <---------ANAC58      <---------ANAC58  <---------TOE1(3)       --------->YAB1<---------MYB52(1) ----->GT1            <----------DOF2 --------->MYB52(2)           <---------YAB1<----------DOF2   tgatttgcttttgaaagtcttgaactttgcttcgtagtgttagtttaagctaattgtagtcgaattcttatcaaagttttaacctttagctctgttatat  8297800  Previous    Next  AGI:  At5g24330.1    Description:  ATXR6 (Arabidopsis thaliana Trithorax- related protein 6); DNA binding. Identical to Histone-lysine N-methyltransferase ATXR6 (ATXR6) [Arabidopsis Thaliana] (GB:Q9FNE9); similar to ATXR5 (SETDOMAIN GROUP 15) [Arabidopsis thaliana] (TAIR:AT5G09790.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO48621.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain SET; (InterPro:IPR001214) Range:  from: 8295150    to: 8297071    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g24340.1    Description:  3'-5' exonuclease domain-containing protein. similar to 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G56310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48620.1); contains InterPro domain Protein of unknown function DUF82 (InterPro:IPR002782); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain 3' (InterPro:IPR002562) Range:  from: 8297308    to: 8300377    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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