Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       ------->MYC3                                                       --------->ARR14(2)                                                       <---------ARR11(3)     <---------YAB1                            ----------->GT1            --------->GLK1(2)    --------->YAB1                 <---------GLK1(1)                 --------->YAB1    <-------MYC3              ------                 --------->GLK1(1)               --------->AtLEC2<---------ATHB12        <---------HSFB2a(2)        --------->ZAT6 <---------ALFIN1       <-------TEIL<---------YAB1   --------->ICU4--------->HSFB2a(2)   agtcactataacacttaagaaatccacacctagtaatatgcatacaagtccattcaaaatctgataaatcatgtgccatgatgagtctcttccaaaaaca  8132900                                                           ----------->RAV1(1)                   <---                                                          --------->MYB46(3)             ----------->GT1                      --------->ANAC58                   ------>MYB46(1)             --------->DAG2                      --------->ANAC58                   ------>MYB83               ---------->DOF2--          --------->YAB1                                ----------->RAV1(1)    --------------->AGL15         <---------YAB1                                --------->AtMYB61       <----------DOF2   ----     <----------DOF2  --------->ANAC46     --------->ANAC55(2)              <-----------GT1     ----- --->ATHB12         --------->REM1(1)      <---------ANAC55(2)              <---------AHL20(2)  -----   ttggcatctttatcattttgctacaagacagtaatctaatgcatcaagtattcaacaccaacaacacttaaatccaatttactttgaaaagcagaaaaaa  8133000                           -------->ATHB1                           <---------ICU4                           --------->ATHB51                           --------->ATHB12                          --------->ICU4                          <---------YAB1                                     --------->DAG2                   ----------->RAV1(1)                                      ---------->DOF2     <----------DOF2  ------->GAMYB                                      --------->ANAC58    -------- ------ARR11(3)    --------->MYB52(1)             --------->AGP1         --------->ANAC58   --------- ------->TOE2(3)  --------->ANAC46              --------->LBD16    --------->ALFIN1    --------->ALFIN1 ----->ARR11(3) --------->ANAC46               --------->ANAC46 --------->ALFIN1     <---------ANAC46 ---->CCA1(1)   --------->ANAC58        <---------------AtSPL8 <------ZmHOX2a(1)  <---------DEAR3(1) ---->RVE1(1)   --------->ANAC58       ---------->DOF2  <---------ZAT6 <------ZmHOX2a(1) <------ZmHOX2a(1)   atctcaactttgaatcacacacaacagaattattggtaatggaaagtacccagaactagtgttgaggaggtgaggacgaaaagttcggcgaggagcgaca  8133100                     ------>ZmHOX2a(1)                 <-----------HVH21     --------->At4g35610     <---------HSFC1(2)     <---------HSFB2a(1)     --------->HSFB2a(1)                                                     ---------->DOF2     --------->HSFC1(2)                                                    --------->YAB1           - --->RAV1(1)  ------>ZmHOX2a(1)                --------->AtLEC2        --------->AHL20(2)          -- -->HVH21  ------>ZmHOX2a(1)         <------ZmHOX2a(1)                 <---------AHL20(2)        ----   tggaagaagcttcctcctccgtcctctgtgttcgatacaggacaatgccctgcaagtatttgttcaaattcaatttatcaaaagttcagaatcaaattga  8133200                                                              <---------RAP2.6(2)                                                              <---------DEAR3(1)                                                             --------->SPL7               --------->At4g35610                                                             --------->ATERF1(1)        --------->DAG2                                                             --------->RAP2.6(3)       ---------->DOF2                                         --------->AtLEC2   ------>NtERF2        ------>NtERF2                                ---------->DOF2             <---------ATERF1(1)  <---------PCF5                             --------->LBD16               ----------->HVH21  <---------LBD16                            <---------ANAC46             --------->LBD16      --------->LBD16 ---------->GT1             <---------ANAC55(2)         <---------LBD16      <---------LBD16        - ------->DAG2              <---------LBD16             <---------LBD16      <---------LBD16        <- ------>DOF2              --------->MYB52(1)        <---------ARR14(2)   --------->WOX13(1)     <----   aaaggtgaaattcagagagagagagagattacggagaagcgccatggaagagaagaacccggggacggccatgagcaatccggggaccaaaaagctgagg  8133300                                                                 ==================bZIP_DOF                                                                 <---------ANAC46                                                                 <---------ANAC58                                                                 --------->ANAC55(2)                                                                 <---------bZIP60(2)                                                                 <---------ANAC58 --------->ANAC58                                                                 <---------TGA1a  --------->ANAC58                                                                 <---------ANAC55(2)                                                                 --------->O2     --------->ANAC46                                                                 <---------O2--------->LBD16                                                                 >>>>>>>>>>HY5    --------->REM1(1)                                                                 <---------ANAC55(1)        ---------                                                                ----------->STF1 --------->SPL7                                                                ----------->bZIP911(2)      ---------                                                               <---------TGA2(2)<---------ATERF1(1)                                                              ----------->TGA1 <---------ARR14(2)                                                              ----------->HVH21--------->ARR14(2)    *TSS---------->DOF2                             <----------DOF2          ------>NtERF2  <-------- --------->GLK1(1)                                  =======================bZIP_DOF        --------->RVE1(1) <---------GLK1(1)                     <----------DOF2   --------->YAB1     <---------RAP2.6(2) ---------->ARR10            --------->ARR14(2)    <---------ANAC58        <---------LBD16 --------->CCA1(1) -----ZmHOX2a(1)             <---------ARR14(2)    <---------ANAC58     <----------DOF2  --------->AHL20(2) --ZmHOX2a(1) --------->ATERF1(1)      ====================================bZIP_DOF------>NtERF2   aggagaccctcaaggcgaagccgaagtagcaaatactatctctttgggattttgcttaatggtgatgacgtgttctttccggctacgccaaaaaaatctt  8133400                                     <---------ANAC58                                     <---------O2                                     <---------bZIP60(2)                                     --------->O2                                     <---------TGA1a                                    <---------TOE2(3)                                  ----------->HVH21                            <---------ALFIN1                           ------>MYB46(1)                           -------->P<---------ANAC58                           ====================MYC_MYB                           ------>MYB83                          ----------->RAV1(1)        <---------CCA1(2)       <---------ANAC46  --------->AtMYB61         --------->YAB1                            <------MYB46(1)       <---------ANAC58  ======================MYC_MYB  --------->YAB1                       <------MYB83       <---------ANAC58  ------->GAMYB          <---------ICU4                              xxxxxxxxx      <-------TEIL      --------->MYB46(3)      --------->YAB1                         --------->DAG2 >GLK1(2)               <---------MYB52(2)    <---------ARR11(3)                      ---------->DOF2 >ARR11(3)       ==============================bZIP_DOF<---------YAB1          ---------->DOF2 -ARR11(3)       ---------->DOF2  ----------->TGA1<---------YAB1   --------->DAG2----------->GT1   tgaaacgatgcgtttttgtcaaagtaaccaacacttctgacgttgcaaaatcatcatatcataatccaaaaattgaaatagaaaagaaaaaagggaggtt  8133500                                                                                                    <                                                                                             <xxxxxxx                                                    --------->ARR11(3)                    ------->TEIL                                                    <---------ARR11(3) <---------AtMYB61 <xxxxxxxxxxx                                                  ----------->GT1--------->WRKY18(1)   <---------YAB1                                        ------>ZmHOX2a(1)     --------->MYB59        --------->YAB1<x               <----------DOF2         --------->TOE2(3) <---------AHL20(1)         <---------YAB1 <x        <-----------GT1                --------->TOE1(3) <---------AHL20(2)        <xxxxxxxxxxxxxxxxx  <---------AtMYB61                 --------->ARR14(2)   --------->AHL20(2)     <----------DOF2   <xx xxxxxxxxxxxxx>smallRNA(se3)        <---------ARR14(2)   --------->AHL20(1)--------->ETT(1)<xxxxxxxxx   tgtgatggtttttcaatcttttatactaggtaatctagtatccttatacatgaagataataaattcggtcattgtggtcggactttattatgaatttctg  8133600                <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <---------ZAT18              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->PCF2              --------->ARR14(2)             <------ZmHOX2a(1)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ARR14(2)   <---------CCA1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            -- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              --- xxxxxxxxxxxxxxxsmallRNA(le3)                                                                    <--- xxxxxxxxxxxxsmallRNA(le3) <----------DOF2                                                       <--- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             <--- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            --------->LBD16                  <--- xxxxxxsmallRNA(le3) <---------CCA1(2)                         <---------LBD16                   ---- xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <---------LBD16                   <---- xxxxxxxxxxxxxxsmallRNA(le3)         --------->LBD16     ---------->DOF2                   <---------AHL20(2)   accatattttctataggaccctcttatctctttcttctccgagtttggacgaaggaaaacaaagaccgggaagaaagtatcgcaacaacatgttttattg  8133700                                                                                          <---------ARR11(3)                                                                                          <---------ARR11(1)          --------->YAB1                                                                  ------->TEIL         <---------YAB1                                                                   <---------ARR14(2)    <---------At4g35610                                                                   --------->ARR14(2)    --------->At4g35610                                                          --------->ZAT6     < --------->HVH21                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <----- ------>LBD16                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <------- ------ANAC58                                        <---------ANAC46     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------ANAC55(2)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------CCA1(2) ------ANAC58                          --------------->AGL15      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------ANAC46         --------->WOX13(1)  <----------DOF2   --------->TOE2(3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----->ANAC55(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <- -----LBD16    <-------TEIL         <----------DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ARR14(1)   cgggacagcttatgatgttcatatcaatctattatgcgcttctgcttttagtattgggtaaacctcatacaataactcttctagctctaccgtatctttt  8133800  Previous    Next  AGI:  At5g24060.1    Description:  similar to binding [Arabidopsis thaliana] (TAIR:AT3G49140.1); similar to hypothetical protein OsJ_032866 [Oryza sativa (japonica cultivar-group)] (GB:EAZ18657.1); contains domain PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN (PTHR10483); contains domain SELENIUM-BINDING PROTEIN (PTHR10483:SF4) Range:  from: 8130276    to: 8133304    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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