Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------ANAC58                                                                    <---------ANAC58                                                               <-------MYC3             ----------->HVH21   <-------TEIL                  --------->AHL20(2)            ------->MYC3           --------->CCA1(2) <---------MYB52(1)              <---------ATHB51        --------->ANAC46            <---------ARR11(3) <---------ARR14(2)              <---------ATHB12        --------->ANAC58            --------->ARR11(1) --------->ARR14(2)              <---------AHL20(2)      --------->ANAC58    --------->At4g35610 --->DOF2               <-------TEIL               --------->At5g28300       <---------At4g35610   tccgatacgttcttcacattttgaaatgcattcaaataattcaaaccattcgctgtaacaagccacatgttcttgcgctagctcaaagatttgacaattg  8126900                                   --------->ANAC58                                   --------->ANAC46                                   --------->ANAC58                                  --------->SPL7                         --------->ANAC58                                                     <------                         --------->ANAC58                                                     <------                         --------->ANAC46                                                     <------   <---------ATHB12  --------->CCA1(2)    <------ZmHOX2a(1)                              <----------DOF2   agcaaatcaatagatagacttggatacaagcatccatacgcagaggagtttcttcttaagaacaaactatgtagaacaacttctccattctctttagctt  8127000                                                                                  --------------->AGL15                                                                                  <---------------AGL15                                                                                 <-----------------AGL2                                                                                 <-----------------AGL3                                                                                 ----------------->AGL3                  <------ZmHOX2a(1)                                            <-----------GT1                 --------->At4g35610                                       <---------AHL20(2)       <                 ----------->GT1                                XXXXXXXXXXXXXXXXXXXX>MIR866-5P      -        --------->ARR11(3)                                      --------->ANAC58 <-----------------AGL1     <-----------GT1        <---------YAB1       <-------TEIL   --------->ANAC46 ----------------->AGL1    <-----------GT1       --------->YAB1        --------->CCA1(2)          --------->AHL20(2)     <-- ---ANAC46     <-----------RAV1(2)           <---------YAB1     --------->ANAC58 ----------------->AG ---ANAC58  ------>ZmHOX2a(1)           --------->YAB1   <---------ICU4 <---------ARR11(3)      <---- ---ANAC58----------->RAV1(2)         ------->TEIL     --------->GLK1(2)<---------GLK1(2)    --------   gtagtttaaacatcctggcaggagaaaattatcatctatgtatcatcaagattcaagaatcaatacaagaaacagattttattaccaatattggggacgg  8127100                                                                     ====================HOX2a_HOX2a                                                                     <------ZmHOX2a(2)                                                             --------->DEAR3(1)                                        --------->CCA1(2)    ========================================                                       <---------ARR14(2)    ------->GAMYB           <---------TGA1a             --------->ARR11(1)   <---------MYB55(2)                      <           <---------O2                --------->ARR11(3)   --------->MYB46(3)                      =           --------->TGA1a             --------->ARR14(2)   --------->DEAR3(2)                      -           --------->O2                <---------ARR11(3) <---------ALFIN1                          -        <---------ZAT18         <---------At4g35610      --------->MYB46(3)                         < --------->ATHB12               --------->At4g35610    --------->AtMYB61                        <---- ---------YAB1                <---------DEAR3(1) --------->YAB1   <------NtERF2                ------ -------->ICU4               <---------At4g35610 <---------ICU4  ------>NtERF2                 <----- ---------------AGL1       --------->ANAC58     <---------ATHB12 --------->LBD16               <----- -------HVH21              --------->ANAC58     --------->ICU4 <---------LBD16                 ------ ->SPL7<------ZmHOX2a(1)<---------REM1(2)     --------->WOX13(1)--------->LBD16   <------ZmHOX2a(1) <   tcacgattaggacacttgagaaggtagacacggctgctcaagatatggcaatcatcaccacaaccgccgggatcaaggggaagaggacatctaagtgatg  8127200 =========MYC_MYB ---------ANAC55(2) ============================================bZIP_DOF -------->ANAC55(2) -------->O2                             --------->MYB46(3) ---------O2                          <----------ID1 -------HVH21                ------>ZmHOX2a(2)              <------ZmHOX2a(2) --->TGA2(1)               <---------ARR14(2)           --------->ALFIN1                          --- ----bZIP60(1)             --------->ARR14(2) ----------->HVH21                              <------ZmHOX2a(2) ----TGA2(1)              <------ZmHOX2a(1)--------->MYB52(1)  --------->At4g35610          --------- --->bZIP60(1)  ====================HOX2a_HOX2a--------->MYB52(1)<------ZmHOX2a(2)         --------->GLK1(1) ---------TGA1a <------ZmHOX2a(1) ---------->DOF2   ---------->DOF2---------->DOF2    <---------TOE2(3)   tcatgtgtctgaatttgaggagactagaggatcgccaaaaggaacaaactgaccgaaagtggatcagatcaaagggattgtcgattttaagggagatcaa  8127300                 --------->At4g35610                 <---------GLK1(1)                 <---------At4g35610             ------>NtERF2           <---------MYB52(1)        <---------LBD16     <---------HSFB2a(1)     <---------GLK1(1)    --------->ARR14(2)                                                          <---------ZAT6    <---------ARR14(2)                                                    <---------TOE2(3)    <-----------ARR10 ------>NtERF2                                      <---------ICU4    --------->GLK1(2)--------->DEAR3(1)             <---------YAB1      --------->ICU4   <---------GLK1(2) <---------ETT(1)<---------AHL20(2)               --------->YAB1 ------>ALFIN1<------NtERF2          --------->AHL20(2)              <---------YAB1 >ARR11(3)--------->LBD16     <-----------GT1   <---------WOX13(1) --------->YAB1    ---------->DOF2   gtggagaatctccggtggcaactccgaccattttaccattttattctctgagtgattatagacttggtctgataataatgtagagctaaaagcctaaaac  8127400                                                            <---------ANAC46                                                            <---------ANAC58                                                            --------->O2                                            --------->WRKY45<---------ANAC55(1)                                            --------->WRKY12<---------bZIP60(2)                                           --------->DOF5.7(2)                                         <---------ANAC58   <---------TGA1a                                         <---------ANAC46   <---------ANAC58                                     --------->GLK1(1)      <---------O2                                     <---------GLK1(1) --------->ANAC55(2)                                    <---------ARR14(2) <---------ANAC58                                    --------->ARR14(2) <---------ANAC55(2)              <---------ANAC58                                 <---------TOE2(3)     <---------ANAC58                 <---------ANAC58          <----------DOF2    <------------CBF   <---------DAG2             --------->At5g28300      --------->WRKY38(1)   --------->ATHB12--------->WRKY38(1)--------->ZAT18          <---------ANAC46    --------->REM1(2)      <---------YAB1<---------ANAC58----------->HVH21----------->GT1   --------->ALFIN1       --------------->AGL15 <----------DOF2--------->ZAT14 --------->MYB46(3)  ------->MYC3   <-------GAMYB<---------WOX13(1)======================bZIP_DOF------------>CBF  <-------MYC3  <-----------RAV1(1)<------ZmHOX2a(1) <-----------GT1   --------->ANAC46<---------ZAT2   taaacgtgttgactttctctgttgctctcttgattgaggaaatgcgttgactttattacttgacgtgtactacaagctgtaacaatccctgcttgtgttc  8127500                                                                                                -----                                                                                               ------                                                                                              <------                                                                                              <------                                                              <------ZmHOX2a(2)              <-------                                                             --------->ARR11(3)              <-------                  <-----------GT1                            <---------ARR11(3)    <----------DOF2           ---------->DOF2                           <---------YAB1               <---------ANAC58         --------->HSFB2a(2)                       --------->YAB1                 <---------ANAC58<--         <---------HSFB2a(2)  <------ZmHOX2a(1)   <---------YAB1   <---------AHL20(2)    <-----------   gattcagttttctgaaagtttaacaaatttgaggagaaattcgaatgagtgtatgattatagagatcattttttttttgtttttgctttcaaattgccta  8127600                           <---------ALFIN1                          -------->P<------MYB46(1)                          ------>MYB46(1)                          ------>MYB83 ---->MYB52(1)           ----------->RAV1(1) --------->AHL20(2) ----->HVH21            ------->GAMYB <---------ANAC46 ---MYB59  --------->ARR14(2)       <------MYB83 ---MYB46(2)   --------->LBD16    <---------WOX13(1)                             <---------GLK1(1) --ANAC58  --------->GLK1(2)     <------------CBF  --------->GLK1(2)            <---------GLK1(2) --ANAC58  <---------ARR14(2)   --------->ATHB12 <---------AHL20(2)    <---------AHL20(2) ----------MYB.PH3(1)   --------->AtMYB61    <---------AHL20(2)        --------->AHL20(2) -CBF<-----------GT1   --------->MYB46(3)   <---------AHL20(2)  <---------AHL20(2)           <-------   acggttttttcaaaatccgaaaataaccaacacttgattggtgtattttaaataatctatatggatttttttttttaatatggattttcgaaactataat  8127700                                                                        --------->ANAC58                                                                        --------->ANAC58       <-----                                                                  =========================HOX2a_HOX2a                                                                  ========================HOX2a_HOX2a                                                                  ------>ZmHOX2a(1)           -------                                                                ------>ZmHOX2a(2)   ------>ZmHOX2a(2)      --------->ARR14(2)                                      --------->ARR14(3)   <------ZmHOX2a(2)      <---------ARR14(2)                                      --------->ARR11(3)  <---------ARR14(2)     <------ZmHOX2a(1)                                        <---------ARR14(3)  --------->AGP1   <---------TOE1(2)                            --------->YAB1<---------ARR14(2)  <---------ARR14(3)   <---------TOE2(2)                           <---------ATHB12<------ZmHOX2a(2)  --------->ARR14(3) --------->TOE2(2)                           --------->YAB1   <---------ARR11(3)  --------->ARR14(2) --------->TOE1(2)                        --------->TOE2(3)   --------->ARR14(2)  <---------ARR11(3) --YAB1                          <---------GLK1(2)          ----------->ARR10     --------->ARR11(3)   tcacctaggatttgtatttttgtattgtagtttcagaatttctacattaatcataaactgacaagatcctagacaagaaaacgagatcttatagatgtgc  8127800  Previous    Next  AGI:  At5g24040.1    Description:  F-box family protein. Identical to Putative F-box/Kelch-repeat protein At5g24040 [Arabidopsis Thaliana] (GB:Q9FLV8); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G16290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47506.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 8126048    to: 8127339    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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